Wall clock time and date at job start Sun Mar 29 2020 21:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86799 * 119.99756 * 2 1 4 4 H 1.48498 * 109.47332 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47266 * 120.00222 * 3 2 1 6 6 H 1.48501 * 109.47028 * 240.00139 * 3 2 1 7 7 C 1.38949 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00015 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99874 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99619 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00149 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99792 * 180.02562 * 10 9 7 13 13 H 1.09005 * 112.85229 * 26.79779 * 12 10 9 14 14 C 1.53783 * 113.61711 * 157.99272 * 12 10 9 15 15 C 1.53779 * 87.08164 * 139.97952 * 14 12 10 16 16 C 1.53777 * 87.08558 * 334.57224 * 15 14 12 17 17 H 1.08998 * 113.61974 * 139.97907 * 16 15 14 18 18 C 1.50702 * 113.61204 * 270.88751 * 16 15 14 19 19 N 1.34773 * 120.00040 * 181.38868 * 18 16 15 20 20 O 1.21283 * 119.99915 * 1.38370 * 18 16 15 21 21 H 0.97008 * 119.99901 * 179.97438 * 1 2 3 22 22 H 0.96995 * 119.99777 * 0.02562 * 9 7 2 23 23 H 1.09003 * 113.61444 * 254.53151 * 14 12 10 24 24 H 1.09001 * 113.60832 * 25.43497 * 14 12 10 25 25 H 1.09004 * 113.60952 * 89.11765 * 15 14 12 26 26 H 1.08997 * 113.61920 * 220.01663 * 15 14 12 27 27 H 0.97000 * 119.99859 * 359.97438 * 19 18 16 28 28 H 0.97003 * 119.99881 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 0.0006 5 1 3.1018 1.6965 1.2125 6 1 3.1018 1.6965 -1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2440 -4.8629 -0.0011 13 1 0.2560 -4.7811 -0.4544 14 6 2.0675 -6.0495 -0.5291 15 6 1.4286 -6.8892 0.5896 16 6 1.2411 -5.5733 1.3628 17 1 0.2880 -5.5071 1.8876 18 6 2.4167 -5.2122 2.2338 19 7 2.3777 -4.0975 2.9903 20 8 3.3979 -5.9248 2.2541 21 1 -0.4850 -0.8401 -0.0004 22 1 0.3535 -2.3906 -0.0005 23 1 1.7816 -6.3678 -1.5316 24 1 3.1437 -5.9185 -0.4162 25 1 0.4905 -7.3622 0.2989 26 1 2.1225 -7.5811 1.0669 27 1 1.5930 -3.5274 2.9739 28 1 3.1343 -3.8653 3.5512 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325040526.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:28 Heat of formation + Delta-G solvation = -90.884809 kcal Electronic energy + Delta-G solvation = -14428.181662 eV Core-core repulsion = 11864.261487 eV Total energy + Delta-G solvation = -2563.920176 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.87599 -39.71132 -37.85172 -36.24659 -34.61218 -33.07546 -28.30962 -27.63514 -25.96222 -22.96694 -21.85995 -20.14261 -19.82323 -18.72982 -18.05012 -17.04864 -16.96398 -16.47183 -15.60003 -15.47403 -15.29791 -14.85345 -14.36805 -13.67326 -13.32714 -13.03402 -12.73989 -12.19780 -11.93225 -11.87230 -11.77780 -11.53243 -11.38090 -10.98085 -10.62707 -10.27326 -10.08095 -8.89438 -6.03536 1.46171 1.55443 1.61238 1.82054 2.00792 2.40908 2.57839 3.10077 3.15915 3.46125 3.68555 3.81960 3.90144 4.23265 4.40960 4.56135 4.72378 4.85193 5.05789 5.09881 5.44850 5.66703 5.85072 5.99724 6.41029 6.59471 6.77545 7.31272 7.46734 7.97137 8.58275 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.046467 B = 0.009114 C = 0.008605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.429560 B = 3071.569610 C = 3253.232536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.036 4.036 3 Si 1.129 2.871 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.279 1.279 7 C -0.406 4.406 8 H 0.067 0.933 9 N -0.574 5.574 10 C 0.447 3.553 11 O -0.623 6.623 12 C -0.113 4.113 13 H 0.144 0.856 14 C -0.125 4.125 15 C -0.101 4.101 16 C -0.124 4.124 17 H 0.142 0.858 18 C 0.534 3.466 19 N -0.837 5.837 20 O -0.589 6.589 21 H 0.262 0.738 22 H 0.386 0.614 23 H 0.093 0.907 24 H 0.052 0.948 25 H 0.134 0.866 26 H 0.069 0.931 27 H 0.408 0.592 28 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.744 -7.983 2.910 9.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.235 4.235 3 Si 0.950 3.050 4 H -0.198 1.198 5 H -0.200 1.200 6 H -0.205 1.205 7 C -0.535 4.535 8 H 0.085 0.915 9 N -0.212 5.212 10 C 0.235 3.765 11 O -0.509 6.509 12 C -0.135 4.135 13 H 0.162 0.838 14 C -0.163 4.163 15 C -0.138 4.138 16 C -0.146 4.146 17 H 0.160 0.840 18 C 0.320 3.680 19 N -0.398 5.398 20 O -0.469 6.469 21 H 0.073 0.927 22 H 0.220 0.780 23 H 0.111 0.889 24 H 0.071 0.929 25 H 0.152 0.848 26 H 0.088 0.912 27 H 0.238 0.762 28 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -3.604 -6.857 2.802 8.238 hybrid contribution -0.004 -0.993 0.184 1.010 sum -3.608 -7.849 2.987 9.141 Atomic orbital electron populations 1.70976 1.06826 1.29670 1.47779 1.27591 0.96665 1.04888 0.94345 0.82666 0.73839 0.70876 0.77666 1.19754 1.19957 1.20476 1.20428 0.93610 0.85764 1.53720 0.91538 1.41994 1.08469 1.05152 1.65611 1.20636 0.87986 0.85723 0.82170 1.90548 1.16178 1.87752 1.56397 1.22767 1.01908 0.91106 0.97680 0.83844 1.22808 0.98927 0.94186 1.00383 1.22776 1.02726 0.93955 0.94373 1.22486 0.98249 0.99697 0.94142 0.84019 1.20444 0.88343 0.80339 0.78855 1.43674 1.23024 1.26059 1.47032 1.90632 1.35742 1.53274 1.67279 0.92699 0.77965 0.88872 0.92927 0.84811 0.91182 0.76240 0.76921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.27 13.68 21.66 0.30 -47.97 15 2 C -0.04 -1.85 5.50 84.93 0.47 -1.38 15 3 Si 1.13 47.23 29.92 68.60 2.05 49.28 15 4 H -0.27 -11.08 7.11 99.48 0.71 -10.38 15 5 H -0.27 -10.93 7.11 99.48 0.71 -10.23 15 6 H -0.28 -11.36 7.11 99.48 0.71 -10.66 15 7 C -0.41 -22.14 9.68 84.04 0.81 -21.33 15 8 H 0.07 4.01 7.16 -2.91 -0.02 3.98 15 9 N -0.57 -27.14 5.28 -306.99 -1.62 -28.76 15 10 C 0.45 20.26 6.10 87.66 0.53 20.79 15 11 O -0.62 -34.64 14.81 -3.06 -0.05 -34.68 15 12 C -0.11 -3.62 4.10 -11.01 -0.05 -3.66 15 13 H 0.14 3.49 8.14 -2.38 -0.02 3.47 15 14 C -0.13 -3.95 7.17 31.12 0.22 -3.73 15 15 C -0.10 -2.48 7.45 31.12 0.23 -2.25 15 16 C -0.12 -3.48 4.26 -11.01 -0.05 -3.53 15 17 H 0.14 2.77 8.14 -2.39 -0.02 2.75 15 18 C 0.53 19.57 5.74 87.66 0.50 20.07 15 19 N -0.84 -27.29 8.53 -173.53 -1.48 -28.77 15 20 O -0.59 -26.24 16.52 -3.04 -0.05 -26.29 15 21 H 0.26 13.20 6.78 -92.70 -0.63 12.57 15 22 H 0.39 16.43 6.73 -92.71 -0.62 15.80 15 23 H 0.09 2.41 8.14 -2.39 -0.02 2.39 15 24 H 0.05 2.18 7.23 -2.39 -0.02 2.16 15 25 H 0.13 2.07 8.14 -2.39 -0.02 2.05 15 26 H 0.07 1.94 7.45 -2.39 -0.02 1.93 15 27 H 0.41 11.93 8.83 -92.71 -0.82 11.11 15 28 H 0.40 12.59 8.93 -92.71 -0.83 11.76 15 Total: -1.00 -74.40 245.74 0.92 -73.48 By element: Atomic # 1 Polarization: 39.63 SS G_CDS: -0.91 Total: 38.72 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 2.68 Total: 4.99 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -2.81 Total: -105.50 kcal Atomic # 8 Polarization: -60.87 SS G_CDS: -0.10 Total: -60.97 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.05 Total: 49.28 kcal Total: -74.40 0.92 -73.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325040526.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.402 kcal (2) G-P(sol) polarization free energy of solvation -74.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds