Wall clock time and date at job start Sun Mar 29 2020 21:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99666 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00359 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00109 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99820 * 3 2 1 7 7 C 1.38951 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99421 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00419 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00123 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00229 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99772 * 179.97438 * 10 9 7 13 13 H 1.08996 * 112.85143 * 309.66190 * 12 10 9 14 14 C 1.53779 * 113.61642 * 80.86450 * 12 10 9 15 15 C 1.53780 * 87.08513 * 139.98022 * 14 12 10 16 16 C 1.53785 * 113.61177 * 178.46798 * 12 10 9 17 17 H 1.09002 * 113.61548 * 334.56751 * 16 12 10 18 18 C 1.50696 * 113.61335 * 105.47151 * 16 12 10 19 19 N 1.34778 * 120.00195 * 180.02562 * 18 16 12 20 20 O 1.21282 * 120.00274 * 359.97438 * 18 16 12 21 21 H 0.96996 * 120.00340 * 359.97438 * 1 2 3 22 22 H 0.97000 * 120.00144 * 0.02562 * 9 7 2 23 23 H 1.08999 * 113.61435 * 254.52679 * 14 12 10 24 24 H 1.09004 * 113.61553 * 25.34317 * 14 12 10 25 25 H 1.08995 * 113.61931 * 89.11571 * 15 14 12 26 26 H 1.09003 * 113.61308 * 219.93647 * 15 14 12 27 27 H 0.97007 * 119.99926 * 359.97438 * 19 18 16 28 28 H 0.97000 * 120.00345 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 1.4000 5 1 3.5456 1.4401 -0.7001 6 1 1.4455 2.6527 -0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5579 0.0021 12 6 1.2438 -4.8629 0.0022 13 1 0.4767 -4.9084 0.7751 14 6 0.7426 -5.2855 -1.3889 15 6 1.1383 -6.7220 -1.0086 16 6 2.1557 -6.1007 -0.0343 17 1 3.1308 -5.9116 -0.4832 18 6 2.2474 -6.8220 1.2856 19 7 3.0132 -7.9253 1.3989 20 8 1.6330 -6.4091 2.2463 21 1 -0.4850 0.8400 0.0004 22 1 0.3534 -2.3907 -0.0002 23 1 -0.3302 -5.1500 -1.5262 24 1 1.3298 -4.8719 -2.2088 25 1 0.3427 -7.2772 -0.5117 26 1 1.5969 -7.2793 -1.8255 27 1 3.5049 -8.2554 0.6306 28 1 3.0719 -8.3898 2.2484 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325040527.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:30 Heat of formation + Delta-G solvation = -67.984992 kcal Electronic energy + Delta-G solvation = -13964.793265 eV Core-core repulsion = 11401.866100 eV Total energy + Delta-G solvation = -2562.927165 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.18357 -38.11880 -36.33287 -33.83483 -33.44302 -31.14004 -26.83537 -26.44111 -24.24544 -21.24327 -19.90565 -18.69714 -17.85079 -17.44578 -16.58443 -15.85890 -14.80074 -14.46439 -14.24078 -13.97581 -13.42631 -13.17819 -12.57702 -12.04144 -11.69786 -11.49486 -11.10872 -11.01364 -10.53613 -10.35930 -10.27180 -10.12417 -9.55350 -9.52304 -9.46461 -8.28233 -7.91817 -6.36909 -3.77523 2.86847 3.20959 3.29240 3.35063 3.71882 3.92363 4.22101 4.72500 4.79213 4.90423 5.05090 5.35437 5.40661 5.51213 5.78799 5.99816 6.01892 6.14756 6.34302 6.46063 6.71137 6.91121 7.47212 7.59428 8.10921 8.47278 8.66141 9.21975 9.61009 10.12027 10.80772 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.052474 B = 0.007406 C = 0.007093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.470329 B = 3779.916723 C = 3946.651573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.270 1.270 6 H -0.284 1.284 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.557 5.557 10 C 0.452 3.548 11 O -0.600 6.600 12 C -0.103 4.103 13 H 0.111 0.889 14 C -0.124 4.124 15 C -0.123 4.123 16 C -0.115 4.115 17 H 0.125 0.875 18 C 0.530 3.470 19 N -0.859 5.859 20 O -0.541 6.541 21 H 0.271 0.729 22 H 0.394 0.606 23 H 0.076 0.924 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.400 0.600 28 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.054 -13.216 -2.761 13.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.194 1.194 6 H -0.209 1.209 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.192 5.192 10 C 0.238 3.762 11 O -0.486 6.486 12 C -0.125 4.125 13 H 0.129 0.871 14 C -0.162 4.162 15 C -0.161 4.161 16 C -0.137 4.137 17 H 0.143 0.857 18 C 0.316 3.684 19 N -0.422 5.422 20 O -0.417 6.417 21 H 0.081 0.919 22 H 0.227 0.773 23 H 0.095 0.905 24 H 0.106 0.894 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.228 0.772 28 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 1.248 -12.599 -2.253 12.860 hybrid contribution 0.152 0.511 0.097 0.542 sum 1.400 -12.088 -2.156 12.358 Atomic orbital electron populations 1.69619 1.05934 1.28128 1.50448 1.25269 0.95624 0.99707 0.97308 0.85862 0.79200 0.80843 0.78393 1.20412 1.19441 1.20925 1.19728 0.93371 0.82375 1.47574 0.87979 1.41852 1.09280 1.04553 1.63470 1.19635 0.87960 0.84691 0.83916 1.90480 1.13992 1.87295 1.56821 1.22463 0.98392 0.92786 0.98901 0.87083 1.22792 1.01743 0.94960 0.96726 1.22840 0.98002 0.97204 0.98037 1.22673 1.01510 0.96265 0.93232 0.85676 1.20623 0.77521 0.79751 0.90520 1.43874 1.51423 1.30602 1.16320 1.90722 1.45126 1.65776 1.40077 0.91873 0.77299 0.90545 0.89383 0.89905 0.90632 0.77237 0.77421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.15 13.05 55.50 0.72 -24.42 15 2 C 0.02 0.62 5.50 -17.47 -0.10 0.53 15 3 Si 0.93 21.51 29.55 -169.99 -5.02 16.49 15 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 15 7 C -0.30 -8.67 9.68 -14.94 -0.14 -8.81 15 8 H 0.10 3.07 7.16 -52.49 -0.38 2.69 15 9 N -0.56 -14.81 5.29 -10.96 -0.06 -14.87 15 10 C 0.45 11.22 7.31 -10.99 -0.08 11.14 15 11 O -0.60 -16.75 15.49 5.55 0.09 -16.66 15 12 C -0.10 -1.97 3.47 -90.96 -0.32 -2.29 15 13 H 0.11 2.17 7.43 -51.93 -0.39 1.78 15 14 C -0.12 -1.85 7.63 -25.92 -0.20 -2.05 15 15 C -0.12 -1.50 7.64 -25.83 -0.20 -1.69 15 16 C -0.12 -1.83 3.47 -90.87 -0.32 -2.14 15 17 H 0.13 2.05 7.45 -51.93 -0.39 1.66 15 18 C 0.53 8.56 7.63 -10.99 -0.08 8.47 15 19 N -0.86 -9.28 8.87 31.22 0.28 -9.00 15 20 O -0.54 -11.18 16.74 5.56 0.09 -11.08 15 21 H 0.27 7.15 8.31 -40.82 -0.34 6.81 15 22 H 0.39 10.09 7.90 -40.82 -0.32 9.77 15 23 H 0.08 1.03 8.14 -51.93 -0.42 0.60 15 24 H 0.09 1.36 8.09 -51.93 -0.42 0.94 15 25 H 0.08 0.94 8.09 -51.93 -0.42 0.52 15 26 H 0.08 0.73 8.14 -51.93 -0.42 0.30 15 27 H 0.40 3.02 8.83 -40.82 -0.36 2.66 15 28 H 0.40 3.72 8.93 -40.82 -0.36 3.36 15 LS Contribution 251.11 15.07 3.78 3.78 Total: -1.00 -34.71 251.11 -4.56 -39.28 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -3.02 Total: 13.33 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -1.43 Total: 3.16 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: 0.94 Total: -48.29 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: 0.18 Total: -27.74 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -34.71 -4.56 -39.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325040527.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.709 kcal (2) G-P(sol) polarization free energy of solvation -34.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds