Wall clock time and date at job start Sun Mar 29 2020 21:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99666 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00359 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00109 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99820 * 3 2 1 7 7 C 1.38951 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99421 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00419 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00123 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00229 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99772 * 179.97438 * 10 9 7 13 13 H 1.08996 * 112.85143 * 309.66190 * 12 10 9 14 14 C 1.53779 * 113.61642 * 80.86450 * 12 10 9 15 15 C 1.53780 * 87.08513 * 139.98022 * 14 12 10 16 16 C 1.53785 * 113.61177 * 178.46798 * 12 10 9 17 17 H 1.09002 * 113.61548 * 334.56751 * 16 12 10 18 18 C 1.50696 * 113.61335 * 105.47151 * 16 12 10 19 19 N 1.34778 * 120.00195 * 180.02562 * 18 16 12 20 20 O 1.21282 * 120.00274 * 359.97438 * 18 16 12 21 21 H 0.96996 * 120.00340 * 359.97438 * 1 2 3 22 22 H 0.97000 * 120.00144 * 0.02562 * 9 7 2 23 23 H 1.08999 * 113.61435 * 254.52679 * 14 12 10 24 24 H 1.09004 * 113.61553 * 25.34317 * 14 12 10 25 25 H 1.08995 * 113.61931 * 89.11571 * 15 14 12 26 26 H 1.09003 * 113.61308 * 219.93647 * 15 14 12 27 27 H 0.97007 * 119.99926 * 359.97438 * 19 18 16 28 28 H 0.97000 * 120.00345 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 1.4000 5 1 3.5456 1.4401 -0.7001 6 1 1.4455 2.6527 -0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5579 0.0021 12 6 1.2438 -4.8629 0.0022 13 1 0.4767 -4.9084 0.7751 14 6 0.7426 -5.2855 -1.3889 15 6 1.1383 -6.7220 -1.0086 16 6 2.1557 -6.1007 -0.0343 17 1 3.1308 -5.9116 -0.4832 18 6 2.2474 -6.8220 1.2856 19 7 3.0132 -7.9253 1.3989 20 8 1.6330 -6.4091 2.2463 21 1 -0.4850 0.8400 0.0004 22 1 0.3534 -2.3907 -0.0002 23 1 -0.3302 -5.1500 -1.5262 24 1 1.3298 -4.8719 -2.2088 25 1 0.3427 -7.2772 -0.5117 26 1 1.5969 -7.2793 -1.8255 27 1 3.5049 -8.2554 0.6306 28 1 3.0719 -8.3898 2.2484 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325040527.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:30 Heat of formation + Delta-G solvation = -96.776715 kcal Electronic energy + Delta-G solvation = -13966.041768 eV Core-core repulsion = 11401.866100 eV Total energy + Delta-G solvation = -2564.175668 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.57795 -39.80343 -37.85905 -35.94314 -34.58691 -33.25953 -28.48311 -27.69343 -26.10897 -22.47603 -21.51450 -20.29892 -19.79506 -18.68539 -17.96657 -17.40228 -16.72613 -15.94688 -15.80173 -15.57054 -15.08859 -14.98953 -13.84356 -13.58942 -13.57078 -13.02314 -12.81334 -12.48337 -12.37265 -12.11553 -11.93399 -11.52415 -11.41217 -10.82088 -10.64237 -10.26174 -10.04340 -8.48216 -5.98082 1.36648 1.39887 1.53567 1.62558 2.01264 2.28664 2.63806 3.16136 3.26719 3.45023 3.63724 3.84947 4.02466 4.33625 4.55528 4.74015 4.75999 4.91800 5.05728 5.11210 5.38469 5.45027 5.93222 5.97538 6.48494 6.56152 7.08832 7.38522 7.53589 8.07727 8.69378 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.052474 B = 0.007406 C = 0.007093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.470329 B = 3779.916723 C = 3946.651573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.996 3.004 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.339 4.339 8 H 0.079 0.921 9 N -0.568 5.568 10 C 0.447 3.553 11 O -0.637 6.637 12 C -0.117 4.117 13 H 0.104 0.896 14 C -0.118 4.118 15 C -0.093 4.093 16 C -0.116 4.116 17 H 0.120 0.880 18 C 0.526 3.474 19 N -0.830 5.830 20 O -0.596 6.596 21 H 0.279 0.721 22 H 0.395 0.605 23 H 0.093 0.907 24 H 0.081 0.919 25 H 0.098 0.902 26 H 0.114 0.886 27 H 0.419 0.581 28 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.979 -14.335 -3.666 14.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.819 3.181 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.097 0.903 9 N -0.203 5.203 10 C 0.235 3.765 11 O -0.525 6.525 12 C -0.139 4.139 13 H 0.122 0.878 14 C -0.156 4.156 15 C -0.130 4.130 16 C -0.138 4.138 17 H 0.138 0.862 18 C 0.312 3.688 19 N -0.394 5.394 20 O -0.476 6.476 21 H 0.088 0.912 22 H 0.229 0.771 23 H 0.111 0.889 24 H 0.100 0.900 25 H 0.116 0.884 26 H 0.133 0.867 27 H 0.251 0.749 28 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 1.187 -13.780 -3.184 14.192 hybrid contribution 0.209 0.809 0.392 0.923 sum 1.396 -12.971 -2.792 13.341 Atomic orbital electron populations 1.69686 1.06961 1.29421 1.50003 1.26114 0.96579 1.02579 0.96034 0.84888 0.77964 0.76596 0.78622 1.19827 1.19473 1.19190 1.19729 0.92754 0.84133 1.50260 0.90266 1.41955 1.09295 1.04820 1.64249 1.20720 0.87923 0.86113 0.81697 1.90434 1.15866 1.88193 1.58010 1.22580 0.99012 0.90595 1.01723 0.87800 1.22814 1.02606 0.96656 0.93548 1.22788 0.96851 0.95726 0.97655 1.22704 1.01672 0.95167 0.94263 0.86209 1.20711 0.77615 0.80646 0.89864 1.43595 1.49446 1.28670 1.17693 1.90705 1.47772 1.67618 1.41541 0.91186 0.77104 0.88877 0.90005 0.88353 0.86744 0.74945 0.76188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.52 13.05 21.66 0.28 -51.23 15 2 C -0.01 -0.73 5.50 84.93 0.47 -0.27 15 3 Si 1.00 44.12 29.55 68.60 2.03 46.15 15 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 15 5 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 6 H -0.27 -11.08 7.11 99.48 0.71 -10.37 15 7 C -0.34 -20.17 9.68 84.04 0.81 -19.36 15 8 H 0.08 4.97 7.16 -2.91 -0.02 4.95 15 9 N -0.57 -31.26 5.29 -306.99 -1.62 -32.88 15 10 C 0.45 22.88 7.31 87.66 0.64 23.52 15 11 O -0.64 -36.74 15.49 -3.07 -0.05 -36.79 15 12 C -0.12 -4.46 3.47 -11.01 -0.04 -4.50 15 13 H 0.10 4.12 7.43 -2.39 -0.02 4.10 15 14 C -0.12 -3.31 7.63 31.12 0.24 -3.07 15 15 C -0.09 -1.92 7.64 31.18 0.24 -1.69 15 16 C -0.12 -3.52 3.47 -10.95 -0.04 -3.56 15 17 H 0.12 3.79 7.45 -2.39 -0.02 3.77 15 18 C 0.53 16.33 7.63 87.66 0.67 17.00 15 19 N -0.83 -15.91 8.87 -173.53 -1.54 -17.45 15 20 O -0.60 -24.68 16.74 -3.04 -0.05 -24.73 15 21 H 0.28 14.50 8.31 -92.71 -0.77 13.73 15 22 H 0.40 20.94 7.90 -92.71 -0.73 20.21 15 23 H 0.09 2.29 8.14 -2.39 -0.02 2.27 15 24 H 0.08 2.41 8.09 -2.38 -0.02 2.39 15 25 H 0.10 1.82 8.09 -2.39 -0.02 1.80 15 26 H 0.11 1.59 8.14 -2.39 -0.02 1.57 15 27 H 0.42 4.94 8.83 -92.70 -0.82 4.12 15 28 H 0.41 6.69 8.93 -92.71 -0.83 5.86 15 Total: -1.00 -77.62 251.11 0.88 -76.74 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: -1.16 Total: 32.12 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 2.99 Total: 8.07 kcal Atomic # 7 Polarization: -98.69 SS G_CDS: -2.88 Total: -101.57 kcal Atomic # 8 Polarization: -61.42 SS G_CDS: -0.10 Total: -61.52 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -77.62 0.88 -76.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325040527.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.034 kcal (2) G-P(sol) polarization free energy of solvation -77.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds