Wall clock time and date at job start Sun Mar 29 2020 21:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 119.99707 * 2 1 4 4 H 1.48504 * 109.47051 * 240.00283 * 3 2 1 5 5 H 1.48503 * 109.47363 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47070 * 120.00570 * 3 2 1 7 7 C 1.38949 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00012 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99795 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99795 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00164 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99853 * 179.97438 * 10 9 7 13 13 H 1.08999 * 110.32817 * 39.22285 * 12 10 9 14 14 C 1.54907 * 110.46269 * 276.92396 * 12 10 9 15 15 C 1.55155 * 101.58383 * 204.10678 * 14 12 10 16 16 C 1.54330 * 102.94292 * 35.49718 * 15 14 12 17 17 N 1.47026 * 107.26840 * 337.81024 * 16 15 14 18 18 C 1.34775 * 125.64519 * 178.90227 * 17 16 15 19 19 O 1.21287 * 120.00095 * 0.02562 * 18 17 16 20 20 H 0.96998 * 120.00084 * 359.97438 * 1 2 3 21 21 H 0.97006 * 119.99951 * 0.02562 * 9 7 2 22 22 H 1.09001 * 111.00336 * 322.17702 * 14 12 10 23 23 H 1.08994 * 111.00852 * 85.99220 * 14 12 10 24 24 H 1.08998 * 110.71769 * 277.13840 * 15 14 12 25 25 H 1.08991 * 110.72382 * 153.86236 * 15 14 12 26 26 H 1.08998 * 109.88224 * 218.39343 * 16 15 14 27 27 H 1.08998 * 109.88221 * 97.22736 * 16 15 14 28 28 H 1.08001 * 120.00097 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2126 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0010 13 1 0.3682 -4.7948 -0.6463 14 6 0.8234 -5.2448 1.4401 15 6 0.6728 -6.7846 1.3231 16 6 1.7940 -7.1673 0.3341 17 7 2.1217 -5.9623 -0.4418 18 6 3.0684 -5.8766 -1.3973 19 8 3.7351 -6.8498 -1.6794 20 1 -0.4850 0.8400 0.0004 21 1 0.3534 -2.3906 -0.0005 22 1 1.6014 -4.9817 2.1568 23 1 -0.1248 -4.7781 1.7071 24 1 -0.3047 -7.0467 0.9182 25 1 0.8317 -7.2622 2.2898 26 1 1.4459 -7.9551 -0.3340 27 1 2.6730 -7.5053 0.8829 28 1 3.2334 -4.9415 -1.9117 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327877572.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:38 Heat of formation + Delta-G solvation = -72.598235 kcal Electronic energy + Delta-G solvation = -14132.420352 eV Core-core repulsion = 11569.293142 eV Total energy + Delta-G solvation = -2563.127210 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.85246 -37.86766 -36.53430 -34.10522 -31.55007 -31.16124 -29.24358 -25.25048 -23.90480 -21.75608 -20.48510 -19.07621 -18.05384 -16.82974 -16.63538 -15.23899 -15.01635 -14.36853 -13.95734 -13.80012 -13.79501 -12.99310 -12.80566 -12.52633 -11.91926 -11.65009 -11.41563 -11.20162 -11.10940 -10.69172 -10.52952 -10.34179 -9.69898 -9.46898 -8.72738 -8.20996 -8.12937 -6.55918 -3.97471 3.08992 3.15671 3.19714 3.24434 3.38498 3.72482 4.07983 4.61630 4.71172 4.86076 5.07137 5.16927 5.42275 5.53852 5.57371 5.78902 5.89157 5.94390 6.06691 6.12160 6.31645 6.56610 7.42337 7.79437 7.91783 8.41890 8.54414 9.01815 9.35242 9.84580 10.60695 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.047037 B = 0.008182 C = 0.007311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.129212 B = 3421.441123 C = 3828.947661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.028 3.972 3 Si 0.933 3.067 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.547 5.547 10 C 0.425 3.575 11 O -0.589 6.589 12 C 0.119 3.881 13 H 0.088 0.912 14 C -0.120 4.120 15 C -0.131 4.131 16 C 0.104 3.896 17 N -0.606 5.606 18 C 0.530 3.470 19 O -0.574 6.574 20 H 0.275 0.725 21 H 0.394 0.606 22 H 0.081 0.919 23 H 0.089 0.911 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.050 -7.301 2.132 8.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.175 4.175 3 Si 0.759 3.241 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.182 5.182 10 C 0.210 3.790 11 O -0.474 6.474 12 C 0.011 3.989 13 H 0.106 0.894 14 C -0.158 4.158 15 C -0.169 4.169 16 C -0.019 4.019 17 N -0.342 5.342 18 C 0.302 3.698 19 O -0.451 6.451 20 H 0.085 0.915 21 H 0.228 0.772 22 H 0.100 0.900 23 H 0.108 0.892 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.950 -7.625 1.889 8.391 hybrid contribution -0.287 1.022 0.095 1.066 sum -3.237 -6.603 1.984 7.616 Atomic orbital electron populations 1.69595 1.06002 1.28655 1.49324 1.25301 0.95645 0.99892 0.96694 0.85887 0.78813 0.80148 0.79242 1.19724 1.20858 1.19774 1.19698 0.93484 0.82040 1.48251 0.87735 1.41852 1.09332 1.04476 1.62525 1.19807 0.88413 0.84730 0.86086 1.90562 1.13564 1.86797 1.56516 1.21829 0.92826 0.87504 0.96694 0.89387 1.22739 1.02772 0.95189 0.95145 1.22650 0.98545 0.96194 0.99476 1.21878 0.97930 0.88322 0.93747 1.48714 1.36830 1.10804 1.37849 1.22400 0.76415 0.92671 0.78270 1.90622 1.47004 1.41202 1.66300 0.91538 0.77199 0.90022 0.89249 0.90496 0.90047 0.91620 0.91686 0.84814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.01 13.05 55.50 0.72 -22.29 15 2 C 0.03 0.70 5.50 -17.47 -0.10 0.60 15 3 Si 0.93 20.13 29.55 -169.99 -5.02 15.10 15 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 5 H -0.28 -5.98 7.11 56.52 0.40 -5.57 15 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 7 C -0.31 -8.04 9.68 -14.93 -0.14 -8.19 15 8 H 0.10 2.90 7.16 -52.49 -0.38 2.53 15 9 N -0.55 -12.86 5.29 -10.97 -0.06 -12.92 15 10 C 0.42 9.35 6.62 -10.98 -0.07 9.28 15 11 O -0.59 -15.17 14.41 5.55 0.08 -15.09 15 12 C 0.12 2.00 3.62 -67.57 -0.24 1.75 15 13 H 0.09 1.29 8.14 -51.93 -0.42 0.87 15 14 C -0.12 -1.64 6.49 -24.58 -0.16 -1.80 15 15 C -0.13 -1.44 6.95 -24.89 -0.17 -1.62 15 16 C 0.10 1.47 6.87 -3.06 -0.02 1.45 15 17 N -0.61 -10.59 3.14 -169.40 -0.53 -11.12 15 18 C 0.53 10.50 10.76 54.05 0.58 11.08 15 19 O -0.57 -12.73 17.50 5.55 0.10 -12.63 15 20 H 0.27 6.71 8.31 -40.82 -0.34 6.37 15 21 H 0.39 8.76 7.90 -40.82 -0.32 8.44 15 22 H 0.08 1.26 8.05 -51.93 -0.42 0.84 15 23 H 0.09 1.07 8.14 -51.93 -0.42 0.64 15 24 H 0.08 0.71 8.14 -51.93 -0.42 0.29 15 25 H 0.08 0.75 8.14 -51.93 -0.42 0.33 15 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 28 H 0.14 2.63 7.12 -52.49 -0.37 2.26 15 LS Contribution 248.12 15.07 3.74 3.74 Total: -1.00 -31.15 248.12 -4.46 -35.61 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -3.16 Total: 7.04 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: -0.33 Total: 12.56 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.14 Total: -46.33 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: 0.18 Total: -27.72 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.15 -4.46 -35.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327877572.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.985 kcal (2) G-P(sol) polarization free energy of solvation -31.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds