Wall clock time and date at job start Sun Mar 29 2020 21:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 119.99707 * 2 1 4 4 H 1.48504 * 109.47051 * 240.00283 * 3 2 1 5 5 H 1.48503 * 109.47363 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47070 * 120.00570 * 3 2 1 7 7 C 1.38949 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00012 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99795 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99795 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00164 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99853 * 179.97438 * 10 9 7 13 13 H 1.08999 * 110.32817 * 39.22285 * 12 10 9 14 14 C 1.54907 * 110.46269 * 276.92396 * 12 10 9 15 15 C 1.55155 * 101.58383 * 204.10678 * 14 12 10 16 16 C 1.54330 * 102.94292 * 35.49718 * 15 14 12 17 17 N 1.47026 * 107.26840 * 337.81024 * 16 15 14 18 18 C 1.34775 * 125.64519 * 178.90227 * 17 16 15 19 19 O 1.21287 * 120.00095 * 0.02562 * 18 17 16 20 20 H 0.96998 * 120.00084 * 359.97438 * 1 2 3 21 21 H 0.97006 * 119.99951 * 0.02562 * 9 7 2 22 22 H 1.09001 * 111.00336 * 322.17702 * 14 12 10 23 23 H 1.08994 * 111.00852 * 85.99220 * 14 12 10 24 24 H 1.08998 * 110.71769 * 277.13840 * 15 14 12 25 25 H 1.08991 * 110.72382 * 153.86236 * 15 14 12 26 26 H 1.08998 * 109.88224 * 218.39343 * 16 15 14 27 27 H 1.08998 * 109.88221 * 97.22736 * 16 15 14 28 28 H 1.08001 * 120.00097 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2126 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0010 13 1 0.3682 -4.7948 -0.6463 14 6 0.8234 -5.2448 1.4401 15 6 0.6728 -6.7846 1.3231 16 6 1.7940 -7.1673 0.3341 17 7 2.1217 -5.9623 -0.4418 18 6 3.0684 -5.8766 -1.3973 19 8 3.7351 -6.8498 -1.6794 20 1 -0.4850 0.8400 0.0004 21 1 0.3534 -2.3906 -0.0005 22 1 1.6014 -4.9817 2.1568 23 1 -0.1248 -4.7781 1.7071 24 1 -0.3047 -7.0467 0.9182 25 1 0.8317 -7.2622 2.2898 26 1 1.4459 -7.9551 -0.3340 27 1 2.6730 -7.5053 0.8829 28 1 3.2334 -4.9415 -1.9117 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327877572.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:38 Heat of formation + Delta-G solvation = -95.567011 kcal Electronic energy + Delta-G solvation = -14133.416353 eV Core-core repulsion = 11569.293142 eV Total energy + Delta-G solvation = -2564.123211 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.35154 -39.60397 -38.00697 -36.02487 -33.39507 -32.51058 -30.60001 -27.04528 -25.34086 -23.12494 -21.83083 -20.72574 -19.90074 -18.35530 -18.13079 -16.84097 -16.66473 -15.99205 -15.70636 -15.46521 -15.14713 -14.39369 -14.20701 -14.04356 -13.52908 -13.18163 -12.97241 -12.62357 -12.45287 -12.23130 -12.12281 -11.68630 -11.56204 -11.10054 -10.44926 -10.06255 -9.71447 -8.49820 -5.98734 1.37550 1.43765 1.52626 1.60387 1.85074 2.12386 2.31233 3.08754 3.16313 3.53297 3.66453 4.07166 4.12241 4.23549 4.32675 4.47234 4.81447 4.87506 4.93914 5.07965 5.25706 5.31875 5.40171 5.93755 6.33543 6.54094 7.00299 7.08122 7.48107 8.01776 8.66198 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.047037 B = 0.008182 C = 0.007311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.129212 B = 3421.441123 C = 3828.947661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.003 4.003 3 Si 0.989 3.011 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.338 4.338 8 H 0.079 0.921 9 N -0.553 5.553 10 C 0.426 3.574 11 O -0.631 6.631 12 C 0.123 3.877 13 H 0.120 0.880 14 C -0.117 4.117 15 C -0.110 4.110 16 C 0.094 3.906 17 N -0.606 5.606 18 C 0.527 3.473 19 O -0.603 6.603 20 H 0.280 0.720 21 H 0.401 0.599 22 H 0.060 0.940 23 H 0.115 0.885 24 H 0.107 0.893 25 H 0.106 0.894 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.746 -7.742 2.842 10.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.205 4.205 3 Si 0.813 3.187 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.467 4.467 8 H 0.097 0.903 9 N -0.188 5.188 10 C 0.213 3.787 11 O -0.519 6.519 12 C 0.016 3.984 13 H 0.137 0.863 14 C -0.156 4.156 15 C -0.148 4.148 16 C -0.028 4.028 17 N -0.341 5.341 18 C 0.299 3.701 19 O -0.484 6.484 20 H 0.090 0.910 21 H 0.235 0.765 22 H 0.078 0.922 23 H 0.133 0.867 24 H 0.126 0.874 25 H 0.124 0.876 26 H 0.098 0.902 27 H 0.073 0.927 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.700 -8.071 2.623 9.701 hybrid contribution 0.244 1.125 -0.112 1.157 sum -4.456 -6.946 2.512 8.626 Atomic orbital electron populations 1.69638 1.06683 1.29632 1.49142 1.25969 0.96477 1.02203 0.95812 0.85039 0.77859 0.76874 0.78906 1.19845 1.19431 1.19825 1.19626 0.92784 0.83846 1.50481 0.90258 1.41842 1.09518 1.04336 1.63110 1.20754 0.88178 0.86121 0.83690 1.90540 1.15830 1.87751 1.57776 1.21988 0.92476 0.84169 0.99784 0.86269 1.22789 1.03160 0.97635 0.91992 1.22666 0.98619 0.93600 0.99916 1.22197 0.98944 0.87297 0.94369 1.48783 1.35950 1.12280 1.37059 1.22270 0.76818 0.92058 0.78933 1.90596 1.48319 1.41917 1.67548 0.91034 0.76457 0.92154 0.86663 0.87433 0.87570 0.90165 0.92686 0.85658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.02 13.05 21.66 0.28 -45.74 15 2 C 0.00 -0.17 5.50 84.93 0.47 0.30 15 3 Si 0.99 40.93 29.55 68.60 2.03 42.96 15 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 15 5 H -0.27 -10.51 7.11 99.48 0.71 -9.80 15 6 H -0.27 -11.25 7.11 99.48 0.71 -10.55 15 7 C -0.34 -18.09 9.68 84.04 0.81 -17.27 15 8 H 0.08 4.58 7.16 -2.92 -0.02 4.55 15 9 N -0.55 -26.06 5.29 -306.99 -1.62 -27.68 15 10 C 0.43 18.79 6.62 87.66 0.58 19.37 15 11 O -0.63 -33.38 14.41 -3.05 -0.04 -33.43 15 12 C 0.12 3.89 3.62 44.72 0.16 4.05 15 13 H 0.12 3.12 8.14 -2.39 -0.02 3.10 15 14 C -0.12 -2.86 6.49 31.98 0.21 -2.65 15 15 C -0.11 -1.95 6.95 31.78 0.22 -1.73 15 16 C 0.09 2.41 6.87 86.73 0.60 3.01 15 17 N -0.61 -20.47 3.14 -808.24 -2.53 -23.00 15 18 C 0.53 21.07 10.76 129.79 1.40 22.47 15 19 O -0.60 -27.08 17.50 -3.05 -0.05 -27.14 15 20 H 0.28 13.31 8.31 -92.71 -0.77 12.54 15 21 H 0.40 17.56 7.90 -92.70 -0.73 16.82 15 22 H 0.06 1.75 8.05 -2.39 -0.02 1.73 15 23 H 0.12 2.27 8.14 -2.39 -0.02 2.25 15 24 H 0.11 1.35 8.14 -2.39 -0.02 1.33 15 25 H 0.11 1.45 8.14 -2.39 -0.02 1.43 15 26 H 0.08 1.87 8.14 -2.39 -0.02 1.85 15 27 H 0.05 1.53 8.14 -2.39 -0.02 1.51 15 28 H 0.13 5.12 7.12 -2.91 -0.02 5.10 15 Total: -1.00 -68.13 248.12 2.94 -65.19 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.44 Total: 21.29 kcal Atomic # 6 Polarization: 23.10 SS G_CDS: 4.44 Total: 27.55 kcal Atomic # 7 Polarization: -92.55 SS G_CDS: -3.87 Total: -96.42 kcal Atomic # 8 Polarization: -60.47 SS G_CDS: -0.10 Total: -60.56 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -68.13 2.94 -65.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327877572.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.379 kcal (2) G-P(sol) polarization free energy of solvation -68.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds