Wall clock time and date at job start Sun Mar 29 2020 21:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86796 * 120.00412 * 2 1 4 4 H 1.48498 * 109.47442 * 270.00659 * 3 2 1 5 5 H 1.48501 * 109.46747 * 30.00586 * 3 2 1 6 6 H 1.48495 * 109.47122 * 150.00050 * 3 2 1 7 7 C 1.38952 * 119.99556 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99966 * 359.97438 * 7 2 1 9 9 N 1.37092 * 119.99810 * 179.97438 * 7 2 1 10 10 C 1.34781 * 120.00118 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99628 * 0.02562 * 10 9 7 12 12 C 1.50694 * 120.00214 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.47225 * 179.97438 * 12 10 9 14 14 H 1.09002 * 110.21925 * 304.52488 * 13 12 10 15 15 C 1.54474 * 110.32194 * 182.54678 * 13 12 10 16 16 C 1.54625 * 101.76763 * 215.54570 * 15 13 12 17 17 C 1.51286 * 104.19405 * 24.79834 * 16 15 13 18 18 O 1.21278 * 124.94126 * 163.77989 * 17 16 15 19 19 N 1.34417 * 110.11297 * 343.74897 * 17 16 15 20 20 H 0.97002 * 119.99481 * 359.97438 * 1 2 3 21 21 H 0.97001 * 120.00101 * 0.02562 * 9 7 2 22 22 H 1.09004 * 109.47185 * 60.00110 * 12 10 9 23 23 H 1.08998 * 109.47434 * 300.00490 * 12 10 9 24 24 H 1.09001 * 110.97106 * 97.42660 * 15 13 12 25 25 H 1.09007 * 110.96855 * 333.66518 * 15 13 12 26 26 H 1.09001 * 110.48978 * 266.11806 * 16 15 13 27 27 H 1.09000 * 110.49031 * 143.47236 * 16 15 13 28 28 H 0.97006 * 124.34688 * 179.62103 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4458 2.6525 0.7002 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2035 -0.0011 10 6 4.0537 -2.3707 -0.0021 11 8 3.4471 -3.4211 -0.0031 12 6 5.5606 -2.3708 -0.0021 13 6 6.0705 -3.8133 -0.0028 14 1 5.6495 -4.3621 0.8397 15 6 7.6137 -3.8368 0.0616 16 6 7.9477 -5.0596 -0.8240 17 6 6.7552 -5.1864 -1.7463 18 8 6.7351 -5.8360 -2.7702 19 7 5.7212 -4.4749 -1.2654 20 1 -0.4849 0.8401 0.0004 21 1 3.8648 -0.3635 -0.0007 22 1 5.9240 -1.8578 0.8884 23 1 5.9240 -1.8562 -0.8916 24 1 7.9593 -3.9897 1.0840 25 1 8.0356 -2.9238 -0.3588 26 1 8.0542 -5.9557 -0.2127 27 1 8.8563 -4.8781 -1.3981 28 1 4.8551 -4.4077 -1.6972 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328158803.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:00 Heat of formation + Delta-G solvation = -80.715680 kcal Electronic energy + Delta-G solvation = -13854.832334 eV Core-core repulsion = 11291.353124 eV Total energy + Delta-G solvation = -2563.479209 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.23575 -38.38293 -36.29910 -34.08704 -31.82258 -31.11794 -30.63335 -25.99356 -23.95860 -21.26359 -20.33103 -19.45269 -18.37846 -17.05314 -16.35587 -15.79732 -15.03091 -14.79558 -14.21184 -13.73083 -13.47287 -13.13201 -12.97846 -12.59021 -12.33940 -12.32181 -11.58832 -11.23138 -11.19828 -11.03966 -10.66250 -10.05475 -9.71116 -9.64955 -8.84384 -8.65922 -8.28280 -6.39662 -3.91780 2.78838 2.95893 3.01033 3.09823 3.59698 3.67655 4.02588 4.27146 4.48458 4.56297 4.86818 5.13580 5.14977 5.28607 5.46392 5.58457 5.63914 5.77940 5.87644 5.94072 6.19805 7.07657 7.35971 7.47242 8.04919 8.47716 8.49971 8.84952 9.32697 9.69750 10.73078 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.056355 B = 0.006998 C = 0.006639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.730874 B = 3999.931676 C = 4216.470659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.043 3.957 3 Si 0.881 3.119 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.310 4.310 8 H 0.120 0.880 9 N -0.584 5.584 10 C 0.443 3.557 11 O -0.579 6.579 12 C -0.146 4.146 13 C 0.150 3.850 14 H 0.090 0.910 15 C -0.131 4.131 16 C -0.156 4.156 17 C 0.512 3.488 18 O -0.550 6.550 19 N -0.709 5.709 20 H 0.275 0.725 21 H 0.372 0.628 22 H 0.095 0.905 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.098 0.902 28 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.658 -0.963 2.320 15.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.161 4.161 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.438 4.438 8 H 0.138 0.862 9 N -0.222 5.222 10 C 0.229 3.771 11 O -0.463 6.463 12 C -0.187 4.187 13 C 0.044 3.956 14 H 0.108 0.892 15 C -0.169 4.169 16 C -0.196 4.196 17 C 0.298 3.702 18 O -0.429 6.429 19 N -0.364 5.364 20 H 0.085 0.915 21 H 0.204 0.796 22 H 0.113 0.887 23 H 0.104 0.896 24 H 0.109 0.891 25 H 0.101 0.899 26 H 0.120 0.880 27 H 0.116 0.884 28 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 15.110 -1.875 1.848 15.338 hybrid contribution 0.072 1.592 -0.046 1.594 sum 15.183 -0.283 1.802 15.292 Atomic orbital electron populations 1.69627 1.05707 1.27670 1.48658 1.25076 0.95518 0.98107 0.97387 0.86657 0.79764 0.83921 0.78966 1.19555 1.20090 1.19435 1.19457 0.79284 0.96688 1.48409 0.86215 1.42260 1.07627 1.06309 1.65988 1.19784 0.88383 0.84556 0.84341 1.90569 1.69823 1.30862 1.55096 1.21953 0.95616 0.97180 1.03992 1.21379 0.93736 0.92761 0.87676 0.89244 1.22739 0.94552 0.98420 1.01186 1.22335 0.98265 1.00317 0.98675 1.20877 0.85780 0.78345 0.85195 1.90724 1.83915 1.42819 1.25430 1.46402 1.15778 1.49640 1.24587 0.91484 0.79551 0.88686 0.89589 0.89124 0.89850 0.88019 0.88385 0.74004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.14 13.96 55.50 0.77 -24.37 15 2 C 0.04 1.14 5.50 -17.46 -0.10 1.05 15 3 Si 0.88 18.77 27.74 -169.99 -4.71 14.06 15 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 6 H -0.27 -5.15 6.52 56.52 0.37 -4.78 15 7 C -0.31 -8.49 10.16 -14.93 -0.15 -8.64 15 8 H 0.12 3.77 7.39 -52.49 -0.39 3.38 15 9 N -0.58 -13.19 5.09 -10.97 -0.06 -13.24 15 10 C 0.44 9.20 7.59 -10.99 -0.08 9.12 15 11 O -0.58 -14.26 14.45 5.55 0.08 -14.18 15 12 C -0.15 -2.05 5.32 -27.89 -0.15 -2.20 15 13 C 0.15 1.97 3.01 -67.02 -0.20 1.76 15 14 H 0.09 1.25 7.99 -51.93 -0.42 0.83 15 15 C -0.13 -1.16 6.69 -25.10 -0.17 -1.33 15 16 C -0.16 -1.59 6.86 -26.74 -0.18 -1.77 15 17 C 0.51 7.91 8.43 -10.86 -0.09 7.82 15 18 O -0.55 -10.76 18.03 5.56 0.10 -10.66 15 19 N -0.71 -11.11 5.60 -52.77 -0.30 -11.41 15 20 H 0.27 7.26 8.31 -40.82 -0.34 6.92 15 21 H 0.37 7.33 5.76 -40.82 -0.24 7.09 15 22 H 0.09 1.07 8.14 -51.93 -0.42 0.64 15 23 H 0.09 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.09 0.60 8.14 -51.93 -0.42 0.17 15 25 H 0.08 0.64 7.92 -51.93 -0.41 0.23 15 26 H 0.10 0.89 8.14 -51.93 -0.42 0.47 15 27 H 0.10 0.86 8.14 -51.93 -0.42 0.44 15 28 H 0.42 7.54 7.89 -40.82 -0.32 7.21 15 LS Contribution 245.11 15.07 3.69 3.69 Total: -1.00 -33.21 245.11 -4.59 -37.81 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -3.05 Total: 12.47 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -1.12 Total: 5.82 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.42 Total: -49.02 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: 0.18 Total: -24.83 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -4.71 Total: 14.06 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -33.21 -4.59 -37.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328158803.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.909 kcal (2) G-P(sol) polarization free energy of solvation -33.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds