Wall clock time and date at job start Sun Mar 29 2020 21:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86796 * 120.00412 * 2 1 4 4 H 1.48498 * 109.47442 * 270.00659 * 3 2 1 5 5 H 1.48501 * 109.46747 * 30.00586 * 3 2 1 6 6 H 1.48495 * 109.47122 * 150.00050 * 3 2 1 7 7 C 1.38952 * 119.99556 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99966 * 359.97438 * 7 2 1 9 9 N 1.37092 * 119.99810 * 179.97438 * 7 2 1 10 10 C 1.34781 * 120.00118 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99628 * 0.02562 * 10 9 7 12 12 C 1.50694 * 120.00214 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.47225 * 179.97438 * 12 10 9 14 14 H 1.09002 * 110.21925 * 304.52488 * 13 12 10 15 15 C 1.54474 * 110.32194 * 182.54678 * 13 12 10 16 16 C 1.54625 * 101.76763 * 215.54570 * 15 13 12 17 17 C 1.51286 * 104.19405 * 24.79834 * 16 15 13 18 18 O 1.21278 * 124.94126 * 163.77989 * 17 16 15 19 19 N 1.34417 * 110.11297 * 343.74897 * 17 16 15 20 20 H 0.97002 * 119.99481 * 359.97438 * 1 2 3 21 21 H 0.97001 * 120.00101 * 0.02562 * 9 7 2 22 22 H 1.09004 * 109.47185 * 60.00110 * 12 10 9 23 23 H 1.08998 * 109.47434 * 300.00490 * 12 10 9 24 24 H 1.09001 * 110.97106 * 97.42660 * 15 13 12 25 25 H 1.09007 * 110.96855 * 333.66518 * 15 13 12 26 26 H 1.09001 * 110.48978 * 266.11806 * 16 15 13 27 27 H 1.09000 * 110.49031 * 143.47236 * 16 15 13 28 28 H 0.97006 * 124.34688 * 179.62103 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4458 2.6525 0.7002 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2035 -0.0011 10 6 4.0537 -2.3707 -0.0021 11 8 3.4471 -3.4211 -0.0031 12 6 5.5606 -2.3708 -0.0021 13 6 6.0705 -3.8133 -0.0028 14 1 5.6495 -4.3621 0.8397 15 6 7.6137 -3.8368 0.0616 16 6 7.9477 -5.0596 -0.8240 17 6 6.7552 -5.1864 -1.7463 18 8 6.7351 -5.8360 -2.7702 19 7 5.7212 -4.4749 -1.2654 20 1 -0.4849 0.8401 0.0004 21 1 3.8648 -0.3635 -0.0007 22 1 5.9240 -1.8578 0.8884 23 1 5.9240 -1.8562 -0.8916 24 1 7.9593 -3.9897 1.0840 25 1 8.0356 -2.9238 -0.3588 26 1 8.0542 -5.9557 -0.2127 27 1 8.8563 -4.8781 -1.3981 28 1 4.8551 -4.4077 -1.6972 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328158803.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:00 Heat of formation + Delta-G solvation = -108.782623 kcal Electronic energy + Delta-G solvation = -13856.049408 eV Core-core repulsion = 11291.353124 eV Total energy + Delta-G solvation = -2564.696283 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.40881 -40.04632 -37.57414 -35.99178 -33.78778 -32.06652 -31.90138 -27.54862 -25.40978 -22.26865 -21.48065 -21.18899 -20.18935 -18.21340 -17.58811 -17.40896 -16.74947 -16.06746 -15.62776 -15.32799 -14.69535 -14.67547 -14.25264 -14.14746 -13.60083 -13.32926 -13.05170 -12.57295 -12.41017 -12.23372 -11.96114 -11.84435 -11.52128 -10.89225 -10.43261 -10.26170 -10.04884 -8.42577 -6.03843 1.29904 1.35933 1.44865 1.62292 1.95513 2.22752 2.52089 2.90811 3.14986 3.53069 3.62565 3.94290 4.14262 4.31866 4.51215 4.58011 4.73360 4.91952 4.95207 5.17545 5.32702 5.53206 5.84582 5.94855 6.20142 6.56334 6.86839 7.25552 7.38830 7.95042 8.75070 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.056355 B = 0.006998 C = 0.006639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.730874 B = 3999.931676 C = 4216.470659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.017 4.017 3 Si 0.966 3.034 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.225 1.225 7 C -0.331 4.331 8 H 0.054 0.946 9 N -0.590 5.590 10 C 0.443 3.557 11 O -0.625 6.625 12 C -0.132 4.132 13 C 0.141 3.859 14 H 0.076 0.924 15 C -0.110 4.110 16 C -0.144 4.144 17 C 0.499 3.501 18 O -0.604 6.604 19 N -0.721 5.721 20 H 0.279 0.721 21 H 0.391 0.609 22 H 0.141 0.859 23 H 0.112 0.888 24 H 0.126 0.874 25 H 0.107 0.893 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.803 1.124 3.430 20.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.216 4.216 3 Si 0.786 3.214 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.148 1.148 7 C -0.460 4.460 8 H 0.072 0.928 9 N -0.230 5.230 10 C 0.232 3.768 11 O -0.511 6.511 12 C -0.173 4.173 13 C 0.036 3.964 14 H 0.094 0.906 15 C -0.148 4.148 16 C -0.184 4.184 17 C 0.287 3.713 18 O -0.487 6.487 19 N -0.373 5.373 20 H 0.088 0.912 21 H 0.227 0.773 22 H 0.159 0.841 23 H 0.130 0.870 24 H 0.144 0.856 25 H 0.126 0.874 26 H 0.137 0.863 27 H 0.138 0.862 28 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 19.307 0.210 2.998 19.539 hybrid contribution -1.299 0.764 -0.399 1.559 sum 18.008 0.974 2.598 18.221 Atomic orbital electron populations 1.69819 1.08293 1.29267 1.50258 1.26173 0.96468 1.02914 0.96015 0.85348 0.79716 0.76544 0.79807 1.18517 1.20234 1.14752 1.19022 0.81797 0.94824 1.50351 0.92783 1.42107 1.05707 1.07917 1.67302 1.21235 0.91511 0.83156 0.80886 1.90561 1.71891 1.32666 1.55949 1.22025 0.89236 0.98709 1.07310 1.21654 0.97229 0.91667 0.85880 0.90601 1.22797 0.90219 0.98661 1.03109 1.22392 0.96063 1.01992 0.97918 1.21915 0.87227 0.77038 0.85076 1.90683 1.85019 1.44925 1.28028 1.46727 1.15118 1.49998 1.25446 0.91193 0.77333 0.84147 0.87016 0.85595 0.87435 0.86266 0.86238 0.76324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.98 13.96 21.66 0.30 -55.68 15 2 C -0.02 -0.93 5.50 84.93 0.47 -0.47 15 3 Si 0.97 37.56 27.74 68.60 1.90 39.47 15 4 H -0.26 -9.73 7.11 99.48 0.71 -9.02 15 5 H -0.28 -10.81 7.11 99.48 0.71 -10.10 15 6 H -0.22 -7.06 6.52 99.48 0.65 -6.41 15 7 C -0.33 -18.86 10.16 84.04 0.85 -18.01 15 8 H 0.05 3.71 7.39 -2.91 -0.02 3.68 15 9 N -0.59 -26.15 5.09 -306.99 -1.56 -27.72 15 10 C 0.44 18.10 7.59 87.65 0.66 18.77 15 11 O -0.62 -31.89 14.45 -3.06 -0.04 -31.94 15 12 C -0.13 -3.17 5.32 29.85 0.16 -3.01 15 13 C 0.14 3.25 3.01 45.44 0.14 3.38 15 14 H 0.08 1.96 7.99 -2.39 -0.02 1.94 15 15 C -0.11 -1.32 6.69 31.65 0.21 -1.10 15 16 C -0.14 -2.35 6.86 30.59 0.21 -2.14 15 17 C 0.50 14.91 8.43 87.90 0.74 15.65 15 18 O -0.60 -23.98 18.03 -3.02 -0.05 -24.03 15 19 N -0.72 -22.19 5.60 -439.45 -2.46 -24.65 15 20 H 0.28 15.25 8.31 -92.71 -0.77 14.48 15 21 H 0.39 14.09 5.76 -92.71 -0.53 13.56 15 22 H 0.14 2.23 8.14 -2.39 -0.02 2.21 15 23 H 0.11 2.23 8.14 -2.39 -0.02 2.21 15 24 H 0.13 0.75 8.14 -2.39 -0.02 0.73 15 25 H 0.11 0.87 7.92 -2.38 -0.02 0.85 15 26 H 0.12 1.59 8.14 -2.39 -0.02 1.57 15 27 H 0.12 1.53 8.14 -2.39 -0.02 1.51 15 28 H 0.40 14.93 7.89 -92.70 -0.73 14.20 15 Total: -1.00 -81.48 245.11 1.40 -80.08 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: -0.13 Total: 31.40 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 3.44 Total: 13.06 kcal Atomic # 7 Polarization: -104.33 SS G_CDS: -3.72 Total: -108.05 kcal Atomic # 8 Polarization: -55.87 SS G_CDS: -0.10 Total: -55.97 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 1.90 Total: 39.47 kcal Total: -81.48 1.40 -80.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328158803.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.698 kcal (2) G-P(sol) polarization free energy of solvation -81.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds