Wall clock time and date at job start Sun Mar 29 2020 21:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86798 * 120.00221 * 2 1 4 4 H 1.48506 * 109.47297 * 90.00069 * 3 2 1 5 5 H 1.48503 * 109.47261 * 330.00250 * 3 2 1 6 6 H 1.48500 * 109.47454 * 210.00243 * 3 2 1 7 7 C 1.38949 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00197 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99753 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00130 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99602 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00454 * 180.02562 * 10 9 7 13 13 C 1.52993 * 109.47635 * 179.97438 * 12 10 9 14 14 H 1.09004 * 110.21189 * 54.29981 * 13 12 10 15 15 C 1.54481 * 110.25154 * 176.22531 * 13 12 10 16 16 C 1.54631 * 101.76182 * 93.58674 * 15 13 12 17 17 C 1.51278 * 104.19670 * 24.79817 * 16 15 13 18 18 O 1.21281 * 124.94500 * 163.71914 * 17 16 15 19 19 N 1.34627 * 110.15105 * 343.77188 * 17 16 15 20 20 H 0.97001 * 120.00308 * 180.02562 * 1 2 3 21 21 H 0.97006 * 120.00323 * 0.02562 * 9 7 2 22 22 H 1.08998 * 109.46878 * 300.00310 * 12 10 9 23 23 H 1.09007 * 109.47366 * 59.99693 * 12 10 9 24 24 H 1.08994 * 110.97604 * 211.70363 * 15 13 12 25 25 H 1.09002 * 110.96921 * 335.47528 * 15 13 12 26 26 H 1.08999 * 110.48673 * 143.47966 * 16 15 13 27 27 H 1.08999 * 110.48790 * 266.12385 * 16 15 13 28 28 H 0.97001 * 124.46771 * 179.53721 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 1.4001 5 1 1.4456 2.6527 -0.7000 6 1 3.5457 1.4402 -0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2101 -3.5578 -0.0010 12 6 1.2437 -4.8629 -0.0011 13 6 2.2378 -6.0259 -0.0016 14 1 2.9362 -5.9246 0.8291 15 6 1.4860 -7.3721 0.0932 16 6 1.3396 -7.7570 -1.3973 17 6 2.4774 -7.0317 -2.0813 18 8 2.8903 -7.2801 -3.1943 19 7 2.9662 -6.0708 -1.2749 20 1 -0.4851 -0.8400 0.0004 21 1 0.3532 -2.3906 -0.0005 22 1 0.6167 -4.9208 0.8886 23 1 0.6173 -4.9205 -0.8914 24 1 2.0780 -8.1126 0.6309 25 1 0.5097 -7.2416 0.5600 26 1 1.4425 -8.8346 -1.5249 27 1 0.3806 -7.4156 -1.7870 28 1 3.7039 -5.4843 -1.5046 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328158804.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:01 Heat of formation + Delta-G solvation = -86.685759 kcal Electronic energy + Delta-G solvation = -13918.625382 eV Core-core repulsion = 11354.887290 eV Total energy + Delta-G solvation = -2563.738091 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.27279 -38.29482 -36.32723 -34.36484 -31.36105 -31.07603 -30.15235 -25.92533 -24.12451 -21.23330 -20.34222 -19.60417 -17.98283 -17.27373 -16.40077 -15.58533 -15.22963 -14.69171 -14.10364 -13.79437 -13.56121 -13.33484 -12.83333 -12.58062 -12.56269 -11.67255 -11.28627 -11.12819 -11.00626 -10.86616 -10.25619 -9.93414 -9.70968 -9.61675 -8.89618 -8.53964 -8.11520 -6.82094 -3.95923 2.77249 3.25922 3.31895 3.50930 3.65478 3.76641 4.16114 4.38003 4.48222 4.72224 4.86762 5.17761 5.19482 5.33754 5.53757 5.58572 5.69815 5.82532 5.88534 6.04624 6.17804 7.07156 7.35653 7.72604 8.01143 8.48712 8.51369 8.70802 9.39878 9.77436 10.61154 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.057178 B = 0.006777 C = 0.006548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.578444 B = 4130.327688 C = 4274.983952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.008 4.008 3 Si 1.093 2.907 4 H -0.284 1.284 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.385 4.385 8 H 0.100 0.900 9 N -0.571 5.571 10 C 0.441 3.559 11 O -0.593 6.593 12 C -0.147 4.147 13 C 0.151 3.849 14 H 0.096 0.904 15 C -0.130 4.130 16 C -0.157 4.157 17 C 0.512 3.488 18 O -0.549 6.549 19 N -0.709 5.709 20 H 0.262 0.738 21 H 0.376 0.624 22 H 0.091 0.909 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.418 -11.349 2.380 11.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.211 4.211 3 Si 0.919 3.081 4 H -0.210 1.210 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.514 4.514 8 H 0.118 0.882 9 N -0.207 5.207 10 C 0.228 3.772 11 O -0.479 6.479 12 C -0.188 4.188 13 C 0.044 3.956 14 H 0.114 0.886 15 C -0.168 4.168 16 C -0.197 4.197 17 C 0.298 3.702 18 O -0.428 6.428 19 N -0.364 5.364 20 H 0.073 0.927 21 H 0.209 0.791 22 H 0.109 0.891 23 H 0.099 0.901 24 H 0.102 0.898 25 H 0.110 0.890 26 H 0.117 0.883 27 H 0.120 0.880 28 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -0.659 -9.854 1.827 10.044 hybrid contribution -0.238 -1.317 0.003 1.338 sum -0.897 -11.171 1.830 11.356 Atomic orbital electron populations 1.70876 1.06557 1.29471 1.46852 1.26534 0.96520 1.02733 0.95286 0.83094 0.74415 0.73379 0.77179 1.21049 1.20586 1.20902 1.20592 0.94731 0.83908 1.52211 0.88224 1.41989 1.08254 1.05716 1.64778 1.19754 0.88297 0.84653 0.84510 1.90495 1.13838 1.87235 1.56314 1.22025 0.98949 0.94359 1.03490 1.21316 0.93595 0.93264 0.87395 0.88647 1.22700 1.01879 0.96357 0.95837 1.22335 0.99113 1.02139 0.96095 1.20989 0.83704 0.80606 0.84858 1.90720 1.64169 1.68731 1.19152 1.46379 1.36375 1.36144 1.17461 0.92690 0.79065 0.89112 0.90119 0.89836 0.89037 0.88347 0.87984 0.74095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.85 13.68 55.50 0.76 -24.09 15 2 C -0.01 -0.21 5.50 -17.47 -0.10 -0.31 15 3 Si 1.09 24.04 29.92 -169.99 -5.09 18.96 15 4 H -0.28 -6.01 7.11 56.52 0.40 -5.60 15 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 7 C -0.39 -10.63 9.68 -14.93 -0.14 -10.77 15 8 H 0.10 2.92 7.16 -52.49 -0.38 2.54 15 9 N -0.57 -13.91 5.28 -10.96 -0.06 -13.97 15 10 C 0.44 9.76 7.68 -10.99 -0.08 9.67 15 11 O -0.59 -14.97 14.60 5.54 0.08 -14.88 15 12 C -0.15 -2.25 5.31 -27.89 -0.15 -2.40 15 13 C 0.15 2.06 3.00 -67.01 -0.20 1.86 15 14 H 0.10 1.36 7.95 -51.93 -0.41 0.95 15 15 C -0.13 -1.22 6.70 -25.10 -0.17 -1.39 15 16 C -0.16 -1.69 6.86 -26.74 -0.18 -1.88 15 17 C 0.51 8.16 8.44 -10.77 -0.09 8.07 15 18 O -0.55 -10.96 18.03 5.56 0.10 -10.86 15 19 N -0.71 -11.36 5.51 -52.72 -0.29 -11.65 15 20 H 0.26 6.93 6.78 -40.82 -0.28 6.65 15 21 H 0.38 8.47 6.73 -40.82 -0.27 8.20 15 22 H 0.09 1.15 8.12 -51.93 -0.42 0.73 15 23 H 0.08 1.17 8.14 -51.92 -0.42 0.75 15 24 H 0.08 0.67 8.14 -51.93 -0.42 0.25 15 25 H 0.09 0.67 7.88 -51.93 -0.41 0.26 15 26 H 0.10 0.91 8.14 -51.93 -0.42 0.48 15 27 H 0.10 0.99 8.14 -51.93 -0.42 0.57 15 28 H 0.42 7.49 8.27 -40.82 -0.34 7.15 15 LS Contribution 246.95 15.07 3.72 3.72 Total: -1.00 -33.46 246.95 -4.88 -38.34 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -2.99 Total: 11.58 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -1.12 Total: 2.86 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 0.41 Total: -49.70 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: 0.18 Total: -25.75 kcal Atomic # 14 Polarization: 24.04 SS G_CDS: -5.09 Total: 18.96 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -33.46 -4.88 -38.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328158804.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.346 kcal (2) G-P(sol) polarization free energy of solvation -33.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds