Wall clock time and date at job start Sun Mar 29 2020 21:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86798 * 120.00221 * 2 1 4 4 H 1.48506 * 109.47297 * 90.00069 * 3 2 1 5 5 H 1.48503 * 109.47261 * 330.00250 * 3 2 1 6 6 H 1.48500 * 109.47454 * 210.00243 * 3 2 1 7 7 C 1.38949 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00197 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99753 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00130 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99602 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00454 * 180.02562 * 10 9 7 13 13 C 1.52993 * 109.47635 * 179.97438 * 12 10 9 14 14 H 1.09004 * 110.21189 * 54.29981 * 13 12 10 15 15 C 1.54481 * 110.25154 * 176.22531 * 13 12 10 16 16 C 1.54631 * 101.76182 * 93.58674 * 15 13 12 17 17 C 1.51278 * 104.19670 * 24.79817 * 16 15 13 18 18 O 1.21281 * 124.94500 * 163.71914 * 17 16 15 19 19 N 1.34627 * 110.15105 * 343.77188 * 17 16 15 20 20 H 0.97001 * 120.00308 * 180.02562 * 1 2 3 21 21 H 0.97006 * 120.00323 * 0.02562 * 9 7 2 22 22 H 1.08998 * 109.46878 * 300.00310 * 12 10 9 23 23 H 1.09007 * 109.47366 * 59.99693 * 12 10 9 24 24 H 1.08994 * 110.97604 * 211.70363 * 15 13 12 25 25 H 1.09002 * 110.96921 * 335.47528 * 15 13 12 26 26 H 1.08999 * 110.48673 * 143.47966 * 16 15 13 27 27 H 1.08999 * 110.48790 * 266.12385 * 16 15 13 28 28 H 0.97001 * 124.46771 * 179.53721 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 1.4001 5 1 1.4456 2.6527 -0.7000 6 1 3.5457 1.4402 -0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2101 -3.5578 -0.0010 12 6 1.2437 -4.8629 -0.0011 13 6 2.2378 -6.0259 -0.0016 14 1 2.9362 -5.9246 0.8291 15 6 1.4860 -7.3721 0.0932 16 6 1.3396 -7.7570 -1.3973 17 6 2.4774 -7.0317 -2.0813 18 8 2.8903 -7.2801 -3.1943 19 7 2.9662 -6.0708 -1.2749 20 1 -0.4851 -0.8400 0.0004 21 1 0.3532 -2.3906 -0.0005 22 1 0.6167 -4.9208 0.8886 23 1 0.6173 -4.9205 -0.8914 24 1 2.0780 -8.1126 0.6309 25 1 0.5097 -7.2416 0.5600 26 1 1.4425 -8.8346 -1.5249 27 1 0.3806 -7.4156 -1.7870 28 1 3.7039 -5.4843 -1.5046 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328158804.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:01 Heat of formation + Delta-G solvation = -113.371832 kcal Electronic energy + Delta-G solvation = -13919.782577 eV Core-core repulsion = 11354.887290 eV Total energy + Delta-G solvation = -2564.895286 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.49398 -40.03938 -37.66592 -36.31846 -33.23298 -32.14335 -31.50897 -27.37568 -25.79925 -22.40032 -21.59024 -21.11800 -19.97244 -18.52774 -18.01057 -16.96729 -16.58253 -16.41805 -15.58833 -15.47883 -14.94322 -14.72750 -14.13171 -13.79497 -13.42807 -13.31446 -13.02071 -12.68920 -12.13825 -11.96993 -11.89126 -11.80077 -11.53258 -10.95683 -10.42550 -10.12187 -10.11388 -8.93739 -6.08011 1.50342 1.53602 1.56533 1.79954 2.01584 2.40553 2.47588 2.99688 3.16070 3.48435 3.66183 3.84562 4.16736 4.18040 4.45644 4.55280 4.67151 4.83663 4.96057 5.11475 5.19884 5.61998 5.82117 5.95473 6.15253 6.55527 6.72969 7.21288 7.43983 7.91589 8.54220 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.057178 B = 0.006777 C = 0.006548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.578444 B = 4130.327688 C = 4274.983952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.042 4.042 3 Si 1.134 2.866 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.280 1.280 7 C -0.411 4.411 8 H 0.072 0.928 9 N -0.588 5.588 10 C 0.440 3.560 11 O -0.628 6.628 12 C -0.135 4.135 13 C 0.144 3.856 14 H 0.087 0.913 15 C -0.110 4.110 16 C -0.146 4.146 17 C 0.500 3.500 18 O -0.601 6.601 19 N -0.720 5.720 20 H 0.260 0.740 21 H 0.385 0.615 22 H 0.131 0.869 23 H 0.096 0.904 24 H 0.104 0.896 25 H 0.127 0.873 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.815 -12.643 3.408 13.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.240 4.240 3 Si 0.954 3.046 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.206 1.206 7 C -0.541 4.541 8 H 0.090 0.910 9 N -0.226 5.226 10 C 0.228 3.772 11 O -0.515 6.515 12 C -0.176 4.176 13 C 0.038 3.962 14 H 0.105 0.895 15 C -0.147 4.147 16 C -0.185 4.185 17 C 0.289 3.711 18 O -0.483 6.483 19 N -0.371 5.371 20 H 0.071 0.929 21 H 0.219 0.781 22 H 0.148 0.852 23 H 0.114 0.886 24 H 0.122 0.878 25 H 0.145 0.855 26 H 0.139 0.861 27 H 0.138 0.862 28 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -2.092 -11.181 2.893 11.737 hybrid contribution 0.266 -0.987 -0.317 1.070 sum -1.827 -12.168 2.576 12.571 Atomic orbital electron populations 1.70941 1.06979 1.29598 1.48153 1.27747 0.96696 1.05302 0.94259 0.82610 0.73561 0.70374 0.78070 1.19404 1.19902 1.20559 1.20541 0.93865 0.85888 1.53786 0.90996 1.42073 1.08661 1.05669 1.66184 1.21100 0.88338 0.86286 0.81441 1.90480 1.15975 1.88166 1.56869 1.22083 0.99042 0.90413 1.06032 1.21557 0.93416 0.95264 0.85933 0.89483 1.22752 1.03288 0.93504 0.95183 1.22405 0.97170 1.02725 0.96242 1.21994 0.84494 0.80414 0.84246 1.90683 1.66032 1.70122 1.21509 1.46676 1.36033 1.35792 1.18647 0.92856 0.78087 0.85155 0.88596 0.87767 0.85524 0.86146 0.86156 0.76111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.56 13.68 21.66 0.30 -50.26 15 2 C -0.04 -2.24 5.50 84.93 0.47 -1.77 15 3 Si 1.13 48.37 29.92 68.60 2.05 50.42 15 4 H -0.27 -10.74 7.11 99.48 0.71 -10.03 15 5 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 6 H -0.28 -11.66 7.11 99.48 0.71 -10.95 15 7 C -0.41 -23.12 9.68 84.04 0.81 -22.31 15 8 H 0.07 4.36 7.16 -2.91 -0.02 4.34 15 9 N -0.59 -28.70 5.28 -306.98 -1.62 -30.32 15 10 C 0.44 19.25 7.68 87.66 0.67 19.92 15 11 O -0.63 -32.21 14.60 -3.08 -0.04 -32.26 15 12 C -0.13 -3.74 5.31 29.84 0.16 -3.58 15 13 C 0.14 3.55 3.00 45.44 0.14 3.69 15 14 H 0.09 2.32 7.95 -2.39 -0.02 2.30 15 15 C -0.11 -1.51 6.70 31.65 0.21 -1.30 15 16 C -0.15 -2.57 6.86 30.59 0.21 -2.36 15 17 C 0.50 15.35 8.44 87.86 0.74 16.09 15 18 O -0.60 -24.21 18.03 -3.03 -0.05 -24.27 15 19 N -0.72 -22.65 5.51 -439.17 -2.42 -25.07 15 20 H 0.26 13.78 6.78 -92.71 -0.63 13.15 15 21 H 0.38 17.19 6.73 -92.70 -0.62 16.57 15 22 H 0.13 2.67 8.12 -2.39 -0.02 2.65 15 23 H 0.10 2.46 8.14 -2.38 -0.02 2.44 15 24 H 0.10 1.10 8.14 -2.39 -0.02 1.08 15 25 H 0.13 0.98 7.88 -2.39 -0.02 0.96 15 26 H 0.12 1.67 8.14 -2.39 -0.02 1.65 15 27 H 0.12 1.76 8.14 -2.39 -0.02 1.74 15 28 H 0.40 14.85 8.27 -92.71 -0.77 14.09 15 Total: -1.00 -75.57 246.95 1.57 -74.01 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: -0.05 Total: 29.36 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 3.41 Total: 8.39 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -3.74 Total: -105.65 kcal Atomic # 8 Polarization: -56.42 SS G_CDS: -0.10 Total: -56.52 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 2.05 Total: 50.42 kcal Total: -75.57 1.57 -74.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328158804.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.364 kcal (2) G-P(sol) polarization free energy of solvation -75.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds