Wall clock time and date at job start Sun Mar 29 2020 21:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00193 * 2 1 4 4 H 1.48496 * 109.47127 * 270.00205 * 3 2 1 5 5 H 1.48499 * 109.46910 * 30.00530 * 3 2 1 6 6 H 1.48499 * 109.47077 * 150.00122 * 3 2 1 7 7 C 1.37877 * 120.00214 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00481 * 179.97438 * 7 2 1 9 9 C 1.50710 * 119.99946 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47349 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00321 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99366 * 0.02562 * 11 10 9 13 13 C 1.50693 * 120.00395 * 179.97438 * 11 10 9 14 14 H 1.09001 * 110.43580 * 302.54735 * 13 11 10 15 15 C 1.54631 * 110.48932 * 180.02562 * 13 11 10 16 16 C 1.54480 * 101.76472 * 266.12187 * 15 13 11 17 17 N 1.46768 * 105.55098 * 334.54015 * 16 15 13 18 18 C 1.34621 * 111.17925 * 17.05474 * 17 16 15 19 19 O 1.21286 * 124.90539 * 179.58130 * 18 17 16 20 20 H 0.97001 * 120.00182 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.46819 * 59.99756 * 9 7 2 22 22 H 1.09006 * 109.46603 * 299.99903 * 9 7 2 23 23 H 0.97006 * 119.99873 * 359.97438 * 10 9 7 24 24 H 1.08995 * 110.97041 * 148.00144 * 15 13 11 25 25 H 1.08996 * 111.00066 * 24.25217 * 15 13 11 26 26 H 1.09002 * 110.24648 * 93.58391 * 16 15 13 27 27 H 1.09002 * 110.24453 * 215.49747 * 16 15 13 28 28 H 0.96999 * 124.35248 * 197.08403 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 1.7538 -4.8834 -0.0033 12 8 0.5613 -5.1049 -0.0035 13 6 2.7330 -6.0288 -0.0049 14 1 3.3973 -5.9603 -0.8664 15 6 1.9837 -7.3814 -0.0060 16 6 1.9212 -7.7081 1.5026 17 7 3.0569 -7.0006 2.1057 18 6 3.5289 -6.0467 1.2815 19 8 4.4580 -5.3090 1.5338 20 1 -0.4850 0.8400 0.0004 21 1 0.6247 -2.5563 -0.8920 22 1 0.6240 -2.5575 0.8881 23 1 3.1567 -3.4354 -0.0029 24 1 2.5495 -8.1403 -0.5464 25 1 0.9827 -7.2732 -0.4234 26 1 0.9841 -7.3488 1.9278 27 1 2.0191 -8.7822 1.6603 28 1 3.4196 -7.1961 2.9839 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328287195.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:38 Heat of formation + Delta-G solvation = -81.537021 kcal Electronic energy + Delta-G solvation = -13943.835354 eV Core-core repulsion = 11380.320529 eV Total energy + Delta-G solvation = -2563.514825 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.64098 -38.22903 -36.23945 -34.19114 -32.35682 -31.37912 -28.26995 -26.77694 -23.20968 -21.76399 -21.09648 -19.47387 -17.62190 -17.40309 -16.06985 -15.39654 -15.19513 -14.76158 -14.24613 -14.10432 -13.57354 -13.32814 -12.89161 -12.63979 -11.96661 -11.82704 -11.49799 -11.25975 -10.93544 -10.85582 -10.29517 -9.89065 -9.37831 -9.25128 -9.06875 -8.72354 -7.91760 -6.14642 -4.20933 2.49871 3.12229 3.27506 3.33371 3.37258 3.43409 4.01457 4.37414 4.42396 4.45000 4.87195 5.10925 5.21824 5.38169 5.50532 5.61540 5.84610 6.05201 6.72230 6.94105 7.27155 7.38603 7.49870 7.68412 7.97432 8.21718 8.58869 8.75893 9.02321 9.45223 10.95664 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.051667 B = 0.007278 C = 0.006688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.805726 B = 3846.547650 C = 4185.727591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.701 5.701 11 C 0.514 3.486 12 O -0.549 6.549 13 C -0.153 4.153 14 H 0.128 0.872 15 C -0.119 4.119 16 C 0.101 3.899 17 N -0.731 5.731 18 C 0.532 3.468 19 O -0.521 6.521 20 H 0.266 0.734 21 H 0.030 0.970 22 H 0.028 0.972 23 H 0.397 0.603 24 H 0.084 0.916 25 H 0.109 0.891 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.928 -14.735 1.113 15.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.581 4.581 8 H 0.083 0.917 9 C 0.128 3.872 10 N -0.348 5.348 11 C 0.296 3.704 12 O -0.428 6.428 13 C -0.178 4.178 14 H 0.145 0.855 15 C -0.157 4.157 16 C -0.023 4.023 17 N -0.387 5.387 18 C 0.317 3.683 19 O -0.397 6.397 20 H 0.075 0.925 21 H 0.048 0.952 22 H 0.045 0.955 23 H 0.231 0.769 24 H 0.103 0.897 25 H 0.128 0.872 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 4.344 -14.291 1.135 14.980 hybrid contribution 0.992 0.881 0.387 1.382 sum 5.335 -13.410 1.522 14.512 Atomic orbital electron populations 1.69971 1.06107 1.27302 1.49107 1.24939 0.94918 0.99457 0.94645 0.86397 0.79717 0.82499 0.78239 1.20426 1.21013 1.19648 1.21248 0.93434 0.90355 1.53025 0.91741 1.19170 0.88242 0.81948 0.97813 1.46511 1.11828 1.05837 1.70635 1.19599 0.88523 0.83954 0.78282 1.90651 1.16084 1.84483 1.51600 1.22202 0.99148 0.97237 0.99174 0.85463 1.22564 1.03424 0.93952 0.95711 1.22111 0.89572 0.96907 0.93751 1.46182 1.34690 1.37613 1.20256 1.20451 0.82735 0.79419 0.85728 1.90781 1.28761 1.41965 1.78149 0.92470 0.95243 0.95452 0.76906 0.89700 0.87221 0.90439 0.90215 0.75064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.29 55.43 0.74 -25.71 15 2 C 0.06 1.81 5.46 -17.82 -0.10 1.71 15 3 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 15 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 15 5 H -0.28 -6.67 7.11 56.52 0.40 -6.26 15 6 H -0.27 -6.33 7.11 56.52 0.40 -5.92 15 7 C -0.54 -15.24 9.28 -34.44 -0.32 -15.56 15 8 H 0.06 1.73 7.60 -52.48 -0.40 1.33 15 9 C 0.25 6.76 5.43 -5.19 -0.03 6.73 15 10 N -0.70 -15.68 5.53 -61.47 -0.34 -16.02 15 11 C 0.51 10.31 7.16 -10.99 -0.08 10.23 15 12 O -0.55 -12.51 15.47 5.55 0.09 -12.43 15 13 C -0.15 -2.23 3.33 -91.78 -0.31 -2.54 15 14 H 0.13 1.60 8.14 -51.93 -0.42 1.17 15 15 C -0.12 -1.30 6.50 -25.10 -0.16 -1.46 15 16 C 0.10 1.00 7.77 -3.12 -0.02 0.98 15 17 N -0.73 -8.69 6.26 -59.14 -0.37 -9.06 15 18 C 0.53 8.29 7.72 -10.77 -0.08 8.21 15 19 O -0.52 -9.94 18.03 5.55 0.10 -9.84 15 20 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 21 H 0.03 0.86 8.14 -51.93 -0.42 0.44 15 22 H 0.03 0.82 8.14 -51.93 -0.42 0.39 15 23 H 0.40 8.32 8.32 -40.82 -0.34 7.98 15 24 H 0.08 0.67 8.14 -51.93 -0.42 0.25 15 25 H 0.11 1.34 6.96 -51.93 -0.36 0.98 15 26 H 0.08 0.86 8.14 -51.93 -0.42 0.43 15 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 15 28 H 0.41 4.01 8.96 -40.82 -0.37 3.65 15 LS Contribution 251.08 15.07 3.78 3.78 Total: -1.00 -33.76 251.08 -5.26 -39.02 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -3.14 Total: 5.55 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -1.10 Total: 8.30 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 0.03 Total: -50.79 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: 0.19 Total: -22.27 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -33.76 -5.26 -39.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328287195.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.515 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds