Wall clock time and date at job start Sun Mar 29 2020 21:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99850 * 2 1 4 4 H 1.48497 * 109.46867 * 269.99676 * 3 2 1 5 5 H 1.48499 * 109.47206 * 29.99981 * 3 2 1 6 6 H 1.48503 * 109.46903 * 150.00009 * 3 2 1 7 7 C 1.37878 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99970 * 359.97438 * 7 2 1 9 9 C 1.50690 * 119.99820 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.47072 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99968 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00360 * 359.73034 * 11 10 9 13 13 C 1.50706 * 120.00081 * 180.02562 * 11 10 9 14 14 H 1.08998 * 110.42988 * 57.18531 * 13 11 10 15 15 C 1.54626 * 110.48914 * 179.72674 * 13 11 10 16 16 C 1.54479 * 101.76398 * 93.87767 * 15 13 11 17 17 N 1.46762 * 105.47468 * 25.41655 * 16 15 13 18 18 C 1.34414 * 111.30120 * 342.98480 * 17 16 15 19 19 O 1.21278 * 124.94724 * 180.44333 * 18 17 16 20 20 H 0.97005 * 120.00148 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47343 * 60.00467 * 9 7 2 22 22 H 1.08998 * 109.47656 * 300.00324 * 9 7 2 23 23 H 0.96998 * 119.99507 * 0.02562 * 10 9 7 24 24 H 1.08997 * 110.97121 * 211.99947 * 15 13 11 25 25 H 1.09000 * 110.96846 * 335.72618 * 15 13 11 26 26 H 1.08999 * 110.24311 * 144.41529 * 16 15 13 27 27 H 1.08999 * 110.25222 * 266.32603 * 16 15 13 28 28 H 0.97005 * 124.35227 * 162.97958 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5753 0.0013 11 6 5.3249 -2.8215 0.0005 12 8 6.1131 -1.8997 -0.0062 13 6 5.8273 -4.2424 0.0014 14 1 5.4317 -4.7863 -0.8563 15 6 7.3733 -4.2698 -0.0067 16 6 7.6943 -4.3740 1.5008 17 7 6.5153 -5.0009 2.1098 18 6 5.4506 -4.9364 1.2918 19 8 4.3483 -5.3706 1.5507 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6796 0.8895 22 1 3.8745 -0.6808 -0.8904 23 1 3.3695 -3.3125 0.0020 24 1 7.7452 -5.1410 -0.5458 25 1 7.7776 -3.3500 -0.4294 26 1 8.5753 -4.9966 1.6567 27 1 7.8552 -3.3815 1.9218 28 1 6.5055 -5.4094 2.9896 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328287196.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:39 Heat of formation + Delta-G solvation = -77.205217 kcal Electronic energy + Delta-G solvation = -13989.982312 eV Core-core repulsion = 11426.655328 eV Total energy + Delta-G solvation = -2563.326984 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.73481 -38.37585 -36.30376 -34.32032 -32.38381 -31.48352 -28.60388 -27.18590 -23.03322 -21.70181 -21.05869 -19.64530 -17.74978 -17.44863 -16.39375 -15.49138 -15.25630 -14.93472 -14.32844 -13.96454 -13.65186 -13.46432 -12.97836 -12.74719 -12.36529 -12.14570 -11.59853 -11.34654 -10.98240 -10.76726 -10.01290 -9.90830 -9.48930 -9.38056 -9.15216 -8.76751 -8.20008 -6.18589 -4.21008 2.44251 3.00787 3.27076 3.33461 3.35839 3.41375 3.89536 4.33352 4.34662 4.37705 4.80202 5.03920 5.15867 5.29191 5.42857 5.52515 5.77885 5.97442 6.67621 6.76207 6.89679 7.04687 7.16852 7.37994 8.10174 8.17819 8.50342 8.72989 8.86572 9.40312 10.93487 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.048440 B = 0.007904 C = 0.007207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.897673 B = 3541.609903 C = 3884.285631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.220 3.780 10 N -0.694 5.694 11 C 0.516 3.484 12 O -0.551 6.551 13 C -0.152 4.152 14 H 0.130 0.870 15 C -0.119 4.119 16 C 0.101 3.899 17 N -0.730 5.730 18 C 0.531 3.469 19 O -0.518 6.518 20 H 0.268 0.732 21 H 0.026 0.974 22 H 0.023 0.977 23 H 0.403 0.597 24 H 0.086 0.914 25 H 0.109 0.891 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.481 -8.988 1.158 17.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.099 0.901 9 C 0.098 3.902 10 N -0.341 5.341 11 C 0.299 3.701 12 O -0.431 6.431 13 C -0.177 4.177 14 H 0.147 0.853 15 C -0.156 4.156 16 C -0.023 4.023 17 N -0.387 5.387 18 C 0.315 3.685 19 O -0.393 6.393 20 H 0.077 0.923 21 H 0.043 0.957 22 H 0.041 0.959 23 H 0.238 0.762 24 H 0.104 0.896 25 H 0.127 0.873 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 15.238 -8.354 1.177 17.417 hybrid contribution 0.022 0.344 0.373 0.508 sum 15.260 -8.010 1.549 17.304 Atomic orbital electron populations 1.69890 1.06203 1.27374 1.49396 1.24799 0.94795 0.99104 0.93910 0.86811 0.80529 0.83278 0.79008 1.19810 1.20877 1.18592 1.21103 0.88434 0.95390 1.53243 0.90084 1.19549 0.95498 0.78322 0.96837 1.46232 1.05576 1.11583 1.70736 1.19651 0.83572 0.88952 0.77924 1.90641 1.55461 1.45257 1.51709 1.22187 0.99144 0.96971 0.99410 0.85264 1.22568 0.92292 1.04996 0.95793 1.22109 0.87889 0.98720 0.93619 1.46137 1.12003 1.60335 1.20180 1.20367 0.84065 0.78279 0.85754 1.90802 1.21962 1.48623 1.77934 0.92263 0.95662 0.95868 0.76191 0.89583 0.87260 0.90155 0.90474 0.75012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.96 55.43 0.77 -26.23 15 2 C 0.08 2.24 5.47 -17.82 -0.10 2.14 15 3 Si 0.88 21.62 27.47 -169.99 -4.67 16.96 15 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 15 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 6 H -0.26 -6.38 6.54 56.52 0.37 -6.01 15 7 C -0.54 -15.43 9.83 -34.44 -0.34 -15.76 15 8 H 0.08 2.43 7.84 -52.49 -0.41 2.02 15 9 C 0.22 5.55 4.50 -5.20 -0.02 5.52 15 10 N -0.69 -14.91 5.53 -61.47 -0.34 -15.25 15 11 C 0.52 9.82 7.16 -10.98 -0.08 9.74 15 12 O -0.55 -11.76 15.47 5.56 0.09 -11.68 15 13 C -0.15 -2.12 3.33 -91.78 -0.31 -2.43 15 14 H 0.13 1.55 8.14 -51.93 -0.42 1.12 15 15 C -0.12 -1.21 6.50 -25.10 -0.16 -1.38 15 16 C 0.10 0.94 7.78 -3.12 -0.02 0.92 15 17 N -0.73 -8.30 6.24 -59.20 -0.37 -8.67 15 18 C 0.53 8.03 7.72 -10.86 -0.08 7.95 15 19 O -0.52 -9.77 18.03 5.56 0.10 -9.67 15 20 H 0.27 7.55 8.31 -40.82 -0.34 7.21 15 21 H 0.03 0.67 7.20 -51.93 -0.37 0.30 15 22 H 0.02 0.60 7.57 -51.93 -0.39 0.20 15 23 H 0.40 8.33 8.32 -40.82 -0.34 7.99 15 24 H 0.09 0.63 8.14 -51.93 -0.42 0.21 15 25 H 0.11 1.24 6.96 -51.93 -0.36 0.88 15 26 H 0.08 0.49 8.14 -51.93 -0.42 0.06 15 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 15 28 H 0.41 3.85 8.96 -40.82 -0.37 3.48 15 LS Contribution 247.46 15.07 3.73 3.73 Total: -1.00 -33.99 247.46 -4.91 -38.90 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -3.10 Total: 5.22 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -1.11 Total: 6.70 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: 0.06 Total: -50.15 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: 0.19 Total: -21.35 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -33.99 -4.91 -38.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328287196.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.308 kcal (2) G-P(sol) polarization free energy of solvation -33.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds