Wall clock time and date at job start Sun Mar 29 2020 21:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99850 * 2 1 4 4 H 1.48497 * 109.46867 * 269.99676 * 3 2 1 5 5 H 1.48499 * 109.47206 * 29.99981 * 3 2 1 6 6 H 1.48503 * 109.46903 * 150.00009 * 3 2 1 7 7 C 1.37878 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99970 * 359.97438 * 7 2 1 9 9 C 1.50690 * 119.99820 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.47072 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99968 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00360 * 359.73034 * 11 10 9 13 13 C 1.50706 * 120.00081 * 180.02562 * 11 10 9 14 14 H 1.08998 * 110.42988 * 57.18531 * 13 11 10 15 15 C 1.54626 * 110.48914 * 179.72674 * 13 11 10 16 16 C 1.54479 * 101.76398 * 93.87767 * 15 13 11 17 17 N 1.46762 * 105.47468 * 25.41655 * 16 15 13 18 18 C 1.34414 * 111.30120 * 342.98480 * 17 16 15 19 19 O 1.21278 * 124.94724 * 180.44333 * 18 17 16 20 20 H 0.97005 * 120.00148 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47343 * 60.00467 * 9 7 2 22 22 H 1.08998 * 109.47656 * 300.00324 * 9 7 2 23 23 H 0.96998 * 119.99507 * 0.02562 * 10 9 7 24 24 H 1.08997 * 110.97121 * 211.99947 * 15 13 11 25 25 H 1.09000 * 110.96846 * 335.72618 * 15 13 11 26 26 H 1.08999 * 110.24311 * 144.41529 * 16 15 13 27 27 H 1.08999 * 110.25222 * 266.32603 * 16 15 13 28 28 H 0.97005 * 124.35227 * 162.97958 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5753 0.0013 11 6 5.3249 -2.8215 0.0005 12 8 6.1131 -1.8997 -0.0062 13 6 5.8273 -4.2424 0.0014 14 1 5.4317 -4.7863 -0.8563 15 6 7.3733 -4.2698 -0.0067 16 6 7.6943 -4.3740 1.5008 17 7 6.5153 -5.0009 2.1098 18 6 5.4506 -4.9364 1.2918 19 8 4.3483 -5.3706 1.5507 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6796 0.8895 22 1 3.8745 -0.6808 -0.8904 23 1 3.3695 -3.3125 0.0020 24 1 7.7452 -5.1410 -0.5458 25 1 7.7776 -3.3500 -0.4294 26 1 8.5753 -4.9966 1.6567 27 1 7.8552 -3.3815 1.9218 28 1 6.5055 -5.4094 2.9896 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328287196.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:39 Heat of formation + Delta-G solvation = -106.156253 kcal Electronic energy + Delta-G solvation = -13991.237723 eV Core-core repulsion = 11426.655328 eV Total energy + Delta-G solvation = -2564.582395 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.93651 -39.86341 -37.46133 -36.16449 -34.45479 -32.61000 -30.23836 -28.53666 -24.70723 -22.91646 -22.44102 -21.11762 -19.36288 -18.50884 -18.20380 -17.07359 -16.76283 -16.41766 -15.71465 -15.57711 -14.78606 -14.74684 -14.67755 -14.29153 -14.00499 -13.60938 -13.12182 -12.70863 -12.38001 -12.25516 -11.93938 -11.70416 -11.21867 -10.93939 -10.90432 -10.12493 -10.01803 -8.41428 -6.50242 1.18325 1.33083 1.34079 1.47140 1.60712 2.26824 2.32139 2.47432 2.93084 3.29106 3.44441 3.76028 4.07708 4.25909 4.52998 4.70418 4.77591 4.97587 5.04258 5.16061 5.21805 5.42193 5.73189 5.92002 6.03891 6.49955 6.70933 7.07965 7.12832 7.24388 8.73965 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.048440 B = 0.007904 C = 0.007207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.897673 B = 3541.609903 C = 3884.285631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.024 3.976 3 Si 0.946 3.054 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.554 4.554 8 H 0.050 0.950 9 C 0.232 3.768 10 N -0.704 5.704 11 C 0.515 3.485 12 O -0.573 6.573 13 C -0.148 4.148 14 H 0.151 0.849 15 C -0.111 4.111 16 C 0.098 3.902 17 N -0.715 5.715 18 C 0.522 3.478 19 O -0.566 6.566 20 H 0.273 0.727 21 H 0.014 0.986 22 H 0.022 0.978 23 H 0.406 0.594 24 H 0.126 0.874 25 H 0.100 0.900 26 H 0.126 0.874 27 H 0.067 0.933 28 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.076 -9.155 1.044 20.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.176 4.176 3 Si 0.768 3.232 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.592 4.592 8 H 0.068 0.932 9 C 0.109 3.891 10 N -0.353 5.353 11 C 0.301 3.699 12 O -0.454 6.454 13 C -0.172 4.172 14 H 0.168 0.832 15 C -0.148 4.148 16 C -0.026 4.026 17 N -0.370 5.370 18 C 0.307 3.693 19 O -0.445 6.445 20 H 0.083 0.917 21 H 0.032 0.968 22 H 0.040 0.960 23 H 0.241 0.759 24 H 0.144 0.856 25 H 0.119 0.881 26 H 0.144 0.856 27 H 0.086 0.914 28 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 17.894 -8.544 1.076 19.858 hybrid contribution -0.761 0.327 0.429 0.933 sum 17.133 -8.217 1.505 19.061 Atomic orbital electron populations 1.70008 1.07924 1.28771 1.50442 1.25706 0.95634 1.03014 0.93279 0.85737 0.79133 0.78549 0.79731 1.18427 1.19767 1.18222 1.21296 0.90191 0.94478 1.53199 0.93208 1.19160 0.93329 0.80567 0.96069 1.46182 1.07000 1.10091 1.71980 1.20435 0.82187 0.91105 0.76175 1.90623 1.55680 1.46827 1.52225 1.22231 1.01985 0.93077 0.99906 0.83180 1.22690 0.88859 1.06404 0.96894 1.22360 0.88341 0.99156 0.92707 1.46171 1.11723 1.58948 1.20172 1.20592 0.84057 0.78138 0.86528 1.90779 1.23933 1.50870 1.78894 0.91747 0.96807 0.95967 0.75946 0.85607 0.88133 0.85596 0.91445 0.73807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.45 13.96 21.45 0.30 -57.15 15 2 C 0.02 1.39 5.47 84.65 0.46 1.85 15 3 Si 0.95 44.53 27.47 68.60 1.88 46.42 15 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 15 5 H -0.27 -12.30 7.11 99.48 0.71 -11.60 15 6 H -0.26 -11.92 6.54 99.48 0.65 -11.27 15 7 C -0.55 -32.20 9.83 25.60 0.25 -31.95 15 8 H 0.05 3.12 7.84 -2.91 -0.02 3.10 15 9 C 0.23 11.80 4.50 85.63 0.38 12.18 15 10 N -0.70 -30.53 5.53 -466.79 -2.58 -33.11 15 11 C 0.52 19.18 7.16 87.66 0.63 19.80 15 12 O -0.57 -23.83 15.47 -3.04 -0.05 -23.88 15 13 C -0.15 -3.82 3.33 -11.54 -0.04 -3.86 15 14 H 0.15 3.24 8.14 -2.39 -0.02 3.22 15 15 C -0.11 -1.86 6.50 31.65 0.21 -1.65 15 16 C 0.10 1.45 7.78 86.83 0.68 2.12 15 17 N -0.72 -14.42 6.24 -459.82 -2.87 -17.29 15 18 C 0.52 15.06 7.72 87.90 0.68 15.74 15 19 O -0.57 -21.35 18.03 -3.02 -0.05 -21.41 15 20 H 0.27 15.56 8.31 -92.70 -0.77 14.79 15 21 H 0.01 0.74 7.20 -2.39 -0.02 0.72 15 22 H 0.02 1.14 7.57 -2.39 -0.02 1.12 15 23 H 0.41 17.20 8.32 -92.71 -0.77 16.42 15 24 H 0.13 1.18 8.14 -2.39 -0.02 1.16 15 25 H 0.10 1.96 6.96 -2.39 -0.02 1.95 15 26 H 0.13 0.83 8.14 -2.39 -0.02 0.81 15 27 H 0.07 1.19 8.14 -2.39 -0.02 1.17 15 28 H 0.42 6.87 8.96 -92.70 -0.83 6.04 15 Total: -1.00 -74.89 247.46 -0.58 -75.47 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -0.46 Total: 16.70 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 3.25 Total: 14.24 kcal Atomic # 7 Polarization: -102.40 SS G_CDS: -5.15 Total: -107.55 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -0.10 Total: -45.29 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.42 kcal Total: -74.89 -0.58 -75.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328287196.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.682 kcal (2) G-P(sol) polarization free energy of solvation -74.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds