Wall clock time and date at job start Sun Mar 29 2020 21:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 120.00224 * 2 1 4 4 H 1.48504 * 109.46779 * 264.92829 * 3 2 1 5 5 H 1.48494 * 109.47104 * 24.92759 * 3 2 1 6 6 H 1.48496 * 109.46869 * 144.92953 * 3 2 1 7 7 C 1.37886 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99713 * 0.86755 * 7 2 1 9 9 C 1.50691 * 120.00035 * 180.87689 * 7 2 1 10 10 C 1.53002 * 115.55332 * 86.85310 * 9 7 2 11 11 N 1.46502 * 109.47219 * 64.91828 * 10 9 7 12 12 C 1.34771 * 120.00118 * 184.97375 * 11 10 9 13 13 O 1.21349 * 120.00086 * 355.15643 * 12 11 10 14 14 C 1.49448 * 120.00118 * 175.15398 * 12 11 10 15 15 N 1.34779 * 120.00246 * 182.41497 * 14 12 11 16 16 O 1.21352 * 120.00048 * 2.41457 * 14 12 11 17 17 C 1.53010 * 117.49820 * 232.52429 * 9 7 2 18 18 C 1.52999 * 117.49961 * 301.18006 * 9 7 2 19 19 H 0.97001 * 119.99585 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47126 * 304.91451 * 10 9 7 21 21 H 1.09006 * 109.47048 * 184.91587 * 10 9 7 22 22 H 0.97005 * 119.99331 * 5.24330 * 11 10 9 23 23 H 0.97002 * 119.99597 * 0.02562 * 15 14 12 24 24 H 0.96999 * 119.99934 * 180.02562 * 15 14 12 25 25 H 1.08994 * 117.49953 * 215.00337 * 17 9 7 26 26 H 1.09001 * 117.49587 * 0.02562 * 17 9 7 27 27 H 1.09006 * 117.49988 * 359.97438 * 18 9 7 28 28 H 1.09004 * 117.50026 * 144.97164 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6039 1.9845 -1.3947 5 1 1.3972 2.6813 0.5901 6 1 3.4890 1.4734 0.8044 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0151 9 6 3.5113 -1.1942 0.0194 10 6 4.1530 -1.1296 1.4069 11 7 3.8254 -2.3468 2.1536 12 6 4.2007 -2.4683 3.4423 13 8 4.8850 -1.6094 3.9585 14 6 3.7740 -3.6608 4.2355 15 7 4.1081 -3.7589 5.5376 16 8 3.1266 -4.5409 3.7074 17 6 4.2321 -2.0112 -1.0549 18 6 4.2331 -0.4822 -1.1264 19 1 -0.4849 0.8401 0.0004 20 1 3.7719 -0.2606 1.9433 21 1 5.2350 -1.0470 1.3034 22 1 3.3418 -3.0668 1.7192 23 1 4.6253 -3.0552 5.9598 24 1 3.8315 -4.5331 6.0523 25 1 5.1632 -2.5028 -0.7732 26 1 3.6163 -2.5483 -1.7763 27 1 3.6180 -0.0141 -1.8951 28 1 5.1648 0.0326 -0.8918 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329806062.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:14 Heat of formation + Delta-G solvation = -77.297038 kcal Electronic energy + Delta-G solvation = -14018.702440 eV Core-core repulsion = 11455.371474 eV Total energy + Delta-G solvation = -2563.330966 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.55048 -39.60470 -38.67115 -35.53124 -34.40583 -34.20027 -28.97909 -27.54076 -25.10468 -23.33778 -21.39403 -21.04489 -19.63036 -18.53640 -17.94992 -17.17484 -16.98620 -16.69274 -16.23544 -15.42409 -15.20277 -14.76732 -14.69016 -14.21980 -13.74171 -13.09207 -12.83168 -12.63866 -12.16560 -11.99587 -11.60938 -11.00842 -10.89820 -10.86617 -10.66378 -10.35322 -10.07365 -8.29155 -6.37465 0.37174 1.36911 1.40721 1.49789 1.55119 2.18374 2.37269 2.88121 3.05775 3.29867 3.65762 3.98764 4.33535 4.40006 4.49034 4.73641 4.88316 5.09383 5.23936 5.31380 5.50094 5.58762 5.68498 5.95901 6.28226 6.40803 6.72095 6.85218 7.05506 7.33275 8.85929 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.034192 B = 0.009493 C = 0.009098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.715384 B = 2948.697350 C = 3076.821226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.022 3.978 3 Si 0.937 3.063 4 H -0.261 1.261 5 H -0.303 1.303 6 H -0.238 1.238 7 C -0.484 4.484 8 H 0.037 0.963 9 C -0.048 4.048 10 C 0.159 3.841 11 N -0.672 5.672 12 C 0.496 3.504 13 O -0.552 6.552 14 C 0.518 3.482 15 N -0.797 5.797 16 O -0.552 6.552 17 C -0.155 4.155 18 C -0.185 4.185 19 H 0.265 0.735 20 H 0.050 0.950 21 H 0.075 0.925 22 H 0.415 0.585 23 H 0.423 0.577 24 H 0.423 0.577 25 H 0.107 0.893 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.575 -3.687 6.959 14.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.176 4.176 3 Si 0.762 3.238 4 H -0.186 1.186 5 H -0.231 1.231 6 H -0.161 1.161 7 C -0.522 4.522 8 H 0.056 0.944 9 C -0.049 4.049 10 C 0.036 3.964 11 N -0.322 5.322 12 C 0.276 3.724 13 O -0.432 6.432 14 C 0.296 3.704 15 N -0.364 5.364 16 O -0.429 6.429 17 C -0.192 4.192 18 C -0.223 4.223 19 H 0.074 0.926 20 H 0.069 0.931 21 H 0.093 0.907 22 H 0.251 0.749 23 H 0.255 0.745 24 H 0.258 0.742 25 H 0.125 0.875 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 11.486 -3.423 6.828 13.794 hybrid contribution -0.575 0.515 0.094 0.778 sum 10.911 -2.908 6.922 13.244 Atomic orbital electron populations 1.70041 1.08349 1.28033 1.52200 1.25823 0.95181 1.02875 0.93708 0.85946 0.79606 0.78564 0.79731 1.18595 1.23080 1.16125 1.20369 0.88769 0.92813 1.50247 0.94443 1.19477 0.92811 1.04975 0.87636 1.21161 0.98274 0.85479 0.91481 1.45757 1.55080 1.20692 1.10671 1.20323 0.81398 0.87345 0.83308 1.90701 1.38667 1.43131 1.70689 1.19975 0.79907 0.86015 0.84502 1.43311 1.56293 1.27676 1.09138 1.90816 1.39470 1.41355 1.71281 1.22904 1.01544 0.92815 1.01963 1.23051 1.01866 0.95900 1.01475 0.92629 0.93145 0.90662 0.74882 0.74471 0.74193 0.87517 0.89899 0.90254 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.20 13.96 21.45 0.30 -57.90 15 2 C 0.02 1.24 5.47 84.66 0.46 1.70 15 3 Si 0.94 43.21 24.76 68.60 1.70 44.91 15 4 H -0.26 -11.35 7.01 99.48 0.70 -10.66 15 5 H -0.30 -14.35 7.11 99.48 0.71 -13.65 15 6 H -0.24 -10.05 5.98 99.48 0.60 -9.46 15 7 C -0.48 -26.08 9.30 25.60 0.24 -25.85 15 8 H 0.04 2.27 8.06 -2.91 -0.02 2.25 15 9 C -0.05 -2.02 0.85 -52.93 -0.04 -2.06 15 10 C 0.16 6.23 5.21 86.38 0.45 6.68 15 11 N -0.67 -25.09 5.44 -464.41 -2.53 -27.62 15 12 C 0.50 17.10 7.88 87.27 0.69 17.78 15 13 O -0.55 -20.13 16.49 -3.24 -0.05 -20.18 15 14 C 0.52 15.39 8.16 87.27 0.71 16.10 15 15 N -0.80 -15.16 8.87 -174.49 -1.55 -16.71 15 16 O -0.55 -19.69 17.32 -3.25 -0.06 -19.75 15 17 C -0.16 -5.46 9.96 30.62 0.30 -5.16 15 18 C -0.19 -6.83 7.59 30.62 0.23 -6.60 15 19 H 0.26 15.39 8.31 -92.71 -0.77 14.62 15 20 H 0.05 2.18 6.77 -2.39 -0.02 2.17 15 21 H 0.08 2.58 8.09 -2.38 -0.02 2.56 15 22 H 0.41 15.81 7.93 -92.70 -0.74 15.07 15 23 H 0.42 6.64 8.30 -92.71 -0.77 5.88 15 24 H 0.42 5.76 8.93 -92.71 -0.83 4.93 15 25 H 0.11 3.10 8.14 -2.39 -0.02 3.08 15 26 H 0.08 3.03 8.14 -2.39 -0.02 3.02 15 27 H 0.08 3.15 7.08 -2.38 -0.02 3.13 15 28 H 0.11 3.30 8.14 -2.38 -0.02 3.28 15 Total: -1.00 -68.03 249.26 -0.38 -68.41 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: -1.24 Total: 26.23 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 3.04 Total: 2.60 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -3.78 Total: -102.23 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -0.11 Total: -39.93 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.70 Total: 44.91 kcal Total: -68.03 -0.38 -68.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329806062.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.884 kcal (2) G-P(sol) polarization free energy of solvation -68.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds