Wall clock time and date at job start Sun Mar 29 2020 21:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.27645 * 125.76900 * 2 1 4 4 O 1.41385 * 113.17119 * 179.69612 * 3 2 1 5 5 C 1.44253 * 107.50641 * 17.37474 * 4 3 2 6 6 C 1.52997 * 111.01075 * 92.95355 * 5 4 3 7 7 C 1.50697 * 111.00970 * 216.78608 * 5 4 3 8 8 O 1.21292 * 119.99924 * 143.54755 * 7 5 4 9 9 N 1.34778 * 120.00350 * 323.54568 * 7 5 4 10 10 C 1.37090 * 120.00457 * 179.97438 * 9 7 5 11 11 H 1.08004 * 119.99703 * 0.02562 * 10 9 7 12 12 C 1.38952 * 120.00087 * 179.97438 * 10 9 7 13 13 N 1.31418 * 119.99819 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00230 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.46763 * 89.99705 * 14 12 10 16 16 H 1.48499 * 109.47194 * 209.99557 * 14 12 10 17 17 H 1.48497 * 109.46992 * 329.99847 * 14 12 10 18 18 C 1.51683 * 125.77122 * 180.02562 * 2 1 3 19 19 H 1.08997 * 109.47308 * 0.02587 * 1 2 3 20 20 H 1.09002 * 109.47338 * 120.02205 * 1 2 3 21 21 H 1.09001 * 109.47360 * 240.02088 * 1 2 3 22 22 H 1.09007 * 109.46868 * 61.45277 * 6 5 4 23 23 H 1.08996 * 109.47172 * 181.45217 * 6 5 4 24 24 H 1.09003 * 109.47489 * 301.45285 * 6 5 4 25 25 H 0.97005 * 119.99351 * 0.02562 * 9 7 5 26 26 H 0.96993 * 119.99901 * 180.02562 * 13 12 10 27 27 H 1.09001 * 110.80744 * 46.44759 * 18 2 1 28 28 H 1.09006 * 110.97207 * 283.02495 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2530 1.0357 0.0000 4 8 3.6328 0.7273 0.0069 5 6 3.7717 -0.6499 -0.3991 6 6 3.9964 -0.7569 -1.9087 7 6 4.8841 -1.3271 0.3592 8 8 4.7737 -2.4892 0.6886 9 7 6.0018 -0.6416 0.6712 10 6 7.0135 -1.2575 1.3615 11 1 6.9151 -2.2923 1.6548 12 6 8.1660 -0.5508 1.6827 13 7 9.1360 -1.1414 2.3439 14 14 8.3364 1.2387 1.1748 15 1 7.7998 2.1116 2.2497 16 1 9.7698 1.5550 0.9496 17 1 7.5751 1.4721 -0.0787 18 6 2.3936 -1.2307 -0.0006 19 1 -0.3634 1.0276 -0.0005 20 1 -0.3634 -0.5142 -0.8898 21 1 -0.3634 -0.5135 0.8902 22 1 4.9188 -0.2412 -2.1761 23 1 4.0720 -1.8068 -2.1913 24 1 3.1585 -0.2986 -2.4341 25 1 6.0899 0.2879 0.4081 26 1 9.9403 -0.6480 2.5685 27 1 2.0503 -1.9549 -0.7393 28 1 2.4355 -1.6818 0.9909 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336323317.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:53 Heat of formation + Delta-G solvation = -18.286039 kcal Electronic energy + Delta-G solvation = -14247.471624 eV Core-core repulsion = 11686.699567 eV Total energy + Delta-G solvation = -2560.772057 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.41320 -37.91922 -34.19304 -33.82675 -31.98550 -31.61834 -28.41571 -27.16684 -25.43927 -22.30814 -20.00409 -19.10503 -18.35728 -16.58771 -15.62933 -15.38225 -15.01350 -14.19324 -13.81278 -13.59685 -13.46740 -12.96136 -12.78766 -12.44295 -12.36436 -12.02032 -11.93784 -11.74070 -11.24062 -11.09169 -10.58123 -10.50825 -10.02130 -9.64127 -9.40406 -8.57952 -8.25481 -6.39277 -3.90380 1.92777 3.03915 3.12983 3.17471 3.21641 3.54895 4.05900 4.09569 4.56743 4.59028 4.71633 5.02463 5.26262 5.34356 5.35402 5.44745 5.59948 5.66577 5.79902 5.93360 6.04510 6.17054 6.24901 7.45542 7.57006 8.04190 8.48774 8.83677 9.34208 9.69004 10.72482 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.045870 B = 0.009256 C = 0.008518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.271628 B = 3024.246666 C = 3286.433600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.078 3.922 3 N -0.296 5.296 4 O -0.192 6.192 5 C 0.057 3.943 6 C -0.150 4.150 7 C 0.457 3.543 8 O -0.573 6.573 9 N -0.563 5.563 10 C -0.311 4.311 11 H 0.122 0.878 12 C 0.048 3.952 13 N -0.872 5.872 14 Si 0.877 3.123 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.265 1.265 18 C -0.126 4.126 19 H 0.079 0.921 20 H 0.087 0.913 21 H 0.088 0.912 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.061 0.939 25 H 0.378 0.622 26 H 0.276 0.724 27 H 0.103 0.897 28 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.935 3.588 -6.934 15.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 N -0.038 5.038 4 O -0.211 6.211 5 C 0.013 3.987 6 C -0.208 4.208 7 C 0.241 3.759 8 O -0.457 6.457 9 N -0.199 5.199 10 C -0.439 4.439 11 H 0.140 0.860 12 C -0.157 4.157 13 N -0.510 5.510 14 Si 0.703 3.297 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.191 1.191 18 C -0.166 4.166 19 H 0.098 0.902 20 H 0.105 0.895 21 H 0.107 0.893 22 H 0.091 0.909 23 H 0.097 0.903 24 H 0.080 0.920 25 H 0.212 0.788 26 H 0.087 0.913 27 H 0.121 0.879 28 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.517 4.041 -6.547 15.554 hybrid contribution 0.469 0.482 -0.366 0.765 sum -13.048 4.523 -6.913 15.444 Atomic orbital electron populations 1.20389 0.85532 1.04266 1.03923 1.26305 0.97989 0.92824 0.94470 1.77790 0.89571 1.23412 1.13055 1.91278 1.15377 1.27070 1.87347 1.23224 0.96115 0.82823 0.96502 1.22045 1.02960 1.03492 0.92294 1.18893 0.83585 0.87382 0.85994 1.90582 1.80623 1.16504 1.58038 1.42220 1.15751 1.12525 1.49430 1.19492 0.93689 0.99858 1.30898 0.86032 1.25064 0.95333 0.98686 0.96591 1.69624 1.06754 1.37124 1.37542 0.86681 0.78680 0.84653 0.79712 1.19190 1.19917 1.19057 1.22882 0.90191 0.97630 1.05901 0.90181 0.89474 0.89305 0.90946 0.90252 0.91965 0.78790 0.91349 0.87875 0.87099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.49 36.00 0.38 -0.31 15 2 C 0.08 1.06 7.45 -78.58 -0.59 0.47 15 3 N -0.30 -5.07 12.45 35.65 0.44 -4.63 15 4 O -0.19 -3.86 11.41 -11.37 -0.13 -3.99 15 5 C 0.06 1.08 1.25 -90.84 -0.11 0.97 15 6 C -0.15 -2.37 8.96 37.16 0.33 -2.03 15 7 C 0.46 11.00 6.68 -10.99 -0.07 10.93 15 8 O -0.57 -15.46 15.82 5.55 0.09 -15.37 15 9 N -0.56 -14.41 5.02 -10.96 -0.06 -14.46 15 10 C -0.31 -9.01 10.16 -14.94 -0.15 -9.16 15 11 H 0.12 3.94 7.39 -52.48 -0.39 3.55 15 12 C 0.05 1.34 5.50 -17.46 -0.10 1.24 15 13 N -0.87 -25.52 13.96 55.50 0.77 -24.75 15 14 Si 0.88 20.29 27.74 -169.99 -4.71 15.57 15 15 H -0.27 -6.12 7.11 56.52 0.40 -5.71 15 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 17 H -0.27 -5.80 6.52 56.52 0.37 -5.43 15 18 C -0.13 -1.95 5.84 -26.47 -0.15 -2.10 15 19 H 0.08 0.62 8.14 -51.93 -0.42 0.20 15 20 H 0.09 0.53 8.14 -51.93 -0.42 0.10 15 21 H 0.09 0.60 8.14 -51.93 -0.42 0.18 15 22 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 23 H 0.08 1.18 8.14 -51.93 -0.42 0.75 15 24 H 0.06 0.84 8.14 -51.93 -0.42 0.41 15 25 H 0.38 9.03 5.31 -40.82 -0.22 8.82 15 26 H 0.28 7.43 8.31 -40.82 -0.34 7.09 15 27 H 0.10 1.30 7.91 -51.93 -0.41 0.89 15 28 H 0.11 1.86 7.62 -51.93 -0.40 1.47 15 LS Contribution 248.85 15.07 3.75 3.75 Total: -1.00 -33.19 248.85 -3.42 -36.62 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -3.12 Total: 7.26 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -0.46 Total: 0.01 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 1.16 Total: -43.84 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.04 Total: -19.36 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.71 Total: 15.57 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -33.19 -3.42 -36.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336323317.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.331 kcal (2) G-P(sol) polarization free energy of solvation -33.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds