Wall clock time and date at job start Sun Mar 29 2020 21:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.27645 * 125.76900 * 2 1 4 4 O 1.41385 * 113.17119 * 179.69612 * 3 2 1 5 5 C 1.44253 * 107.50641 * 17.37474 * 4 3 2 6 6 C 1.52997 * 111.01075 * 92.95355 * 5 4 3 7 7 C 1.50697 * 111.00970 * 216.78608 * 5 4 3 8 8 O 1.21292 * 119.99924 * 143.54755 * 7 5 4 9 9 N 1.34778 * 120.00350 * 323.54568 * 7 5 4 10 10 C 1.37090 * 120.00457 * 179.97438 * 9 7 5 11 11 H 1.08004 * 119.99703 * 0.02562 * 10 9 7 12 12 C 1.38952 * 120.00087 * 179.97438 * 10 9 7 13 13 N 1.31418 * 119.99819 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00230 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.46763 * 89.99705 * 14 12 10 16 16 H 1.48499 * 109.47194 * 209.99557 * 14 12 10 17 17 H 1.48497 * 109.46992 * 329.99847 * 14 12 10 18 18 C 1.51683 * 125.77122 * 180.02562 * 2 1 3 19 19 H 1.08997 * 109.47308 * 0.02587 * 1 2 3 20 20 H 1.09002 * 109.47338 * 120.02205 * 1 2 3 21 21 H 1.09001 * 109.47360 * 240.02088 * 1 2 3 22 22 H 1.09007 * 109.46868 * 61.45277 * 6 5 4 23 23 H 1.08996 * 109.47172 * 181.45217 * 6 5 4 24 24 H 1.09003 * 109.47489 * 301.45285 * 6 5 4 25 25 H 0.97005 * 119.99351 * 0.02562 * 9 7 5 26 26 H 0.96993 * 119.99901 * 180.02562 * 13 12 10 27 27 H 1.09001 * 110.80744 * 46.44759 * 18 2 1 28 28 H 1.09006 * 110.97207 * 283.02495 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2530 1.0357 0.0000 4 8 3.6328 0.7273 0.0069 5 6 3.7717 -0.6499 -0.3991 6 6 3.9964 -0.7569 -1.9087 7 6 4.8841 -1.3271 0.3592 8 8 4.7737 -2.4892 0.6886 9 7 6.0018 -0.6416 0.6712 10 6 7.0135 -1.2575 1.3615 11 1 6.9151 -2.2923 1.6548 12 6 8.1660 -0.5508 1.6827 13 7 9.1360 -1.1414 2.3439 14 14 8.3364 1.2387 1.1748 15 1 7.7998 2.1116 2.2497 16 1 9.7698 1.5550 0.9496 17 1 7.5751 1.4721 -0.0787 18 6 2.3936 -1.2307 -0.0006 19 1 -0.3634 1.0276 -0.0005 20 1 -0.3634 -0.5142 -0.8898 21 1 -0.3634 -0.5135 0.8902 22 1 4.9188 -0.2412 -2.1761 23 1 4.0720 -1.8068 -2.1913 24 1 3.1585 -0.2986 -2.4341 25 1 6.0899 0.2879 0.4081 26 1 9.9403 -0.6480 2.5685 27 1 2.0503 -1.9549 -0.7393 28 1 2.4355 -1.6818 0.9909 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336323317.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:53 Heat of formation + Delta-G solvation = -43.952224 kcal Electronic energy + Delta-G solvation = -14248.584593 eV Core-core repulsion = 11686.699567 eV Total energy + Delta-G solvation = -2561.885026 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.83928 -39.76045 -36.25361 -35.07428 -33.82244 -33.28387 -29.29245 -28.38941 -27.46992 -24.00311 -21.46899 -20.87396 -20.12600 -18.26706 -17.15840 -16.93457 -16.55374 -15.88425 -15.31585 -15.16089 -14.92262 -14.57299 -14.25202 -13.74097 -13.51087 -13.28863 -13.18106 -13.07810 -13.03731 -12.53548 -12.36688 -12.05361 -11.71082 -11.65027 -10.85643 -10.39599 -10.33480 -8.54672 -6.15575 0.82818 1.21300 1.26615 1.35796 1.60352 1.96679 2.11998 2.56311 3.00261 3.20781 3.36187 3.47868 3.78413 3.95374 4.41409 4.46766 4.62007 4.68230 4.72532 4.81968 4.90090 5.00057 5.32263 5.39183 5.79257 6.29498 6.43542 6.68212 7.20818 7.68238 8.61563 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.045870 B = 0.009256 C = 0.008518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.271628 B = 3024.246666 C = 3286.433600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.109 3.891 3 N -0.326 5.326 4 O -0.229 6.229 5 C 0.056 3.944 6 C -0.145 4.145 7 C 0.459 3.541 8 O -0.609 6.609 9 N -0.570 5.570 10 C -0.337 4.337 11 H 0.068 0.932 12 C 0.001 3.999 13 N -0.916 5.916 14 Si 0.952 3.048 15 H -0.259 1.259 16 H -0.260 1.260 17 H -0.245 1.245 18 C -0.129 4.129 19 H 0.088 0.912 20 H 0.120 0.880 21 H 0.109 0.891 22 H 0.065 0.935 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.388 0.612 26 H 0.284 0.716 27 H 0.138 0.862 28 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.257 5.254 -8.555 19.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 N -0.072 5.072 4 O -0.244 6.244 5 C 0.012 3.988 6 C -0.202 4.202 7 C 0.244 3.756 8 O -0.495 6.495 9 N -0.208 5.208 10 C -0.465 4.465 11 H 0.086 0.914 12 C -0.200 4.200 13 N -0.556 5.556 14 Si 0.772 3.228 15 H -0.184 1.184 16 H -0.184 1.184 17 H -0.169 1.169 18 C -0.169 4.169 19 H 0.107 0.893 20 H 0.139 0.861 21 H 0.128 0.872 22 H 0.084 0.916 23 H 0.105 0.895 24 H 0.111 0.889 25 H 0.224 0.776 26 H 0.094 0.906 27 H 0.156 0.844 28 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.829 5.698 -8.175 18.704 hybrid contribution 1.037 -0.191 0.186 1.071 sum -14.792 5.507 -7.988 17.690 Atomic orbital electron populations 1.20720 0.81168 1.05720 1.06431 1.27069 0.99989 0.90766 0.90560 1.77861 0.87996 1.24349 1.17027 1.91244 1.18148 1.26854 1.88121 1.23146 0.95306 0.83013 0.97340 1.22046 1.04004 1.04260 0.89927 1.19987 0.84075 0.87087 0.84404 1.90551 1.81568 1.18415 1.58977 1.42134 1.15741 1.12985 1.49950 1.19117 0.95898 0.98294 1.33230 0.91398 1.25963 0.94142 1.04046 0.95862 1.69755 1.07595 1.39618 1.38593 0.85541 0.79605 0.77435 0.80213 1.18371 1.18434 1.16904 1.22966 0.88863 0.99057 1.05974 0.89318 0.86137 0.87246 0.91607 0.89516 0.88899 0.77632 0.90611 0.84387 0.88839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.49 71.23 0.75 -0.21 15 2 C 0.11 2.59 7.45 46.89 0.35 2.94 15 3 N -0.33 -10.42 12.45 -40.62 -0.51 -10.92 15 4 O -0.23 -8.93 11.41 -38.30 -0.44 -9.36 15 5 C 0.06 2.04 1.25 -10.94 -0.01 2.02 15 6 C -0.14 -4.23 8.96 71.98 0.64 -3.59 15 7 C 0.46 22.47 6.68 87.66 0.59 23.06 15 8 O -0.61 -34.02 15.82 -3.07 -0.05 -34.07 15 9 N -0.57 -29.84 5.02 -306.99 -1.54 -31.38 15 10 C -0.34 -20.44 10.16 84.04 0.85 -19.59 15 11 H 0.07 4.75 7.39 -2.91 -0.02 4.73 15 12 C 0.00 0.06 5.50 84.93 0.47 0.53 15 13 N -0.92 -55.37 13.96 21.66 0.30 -55.07 15 14 Si 0.95 41.79 27.74 68.60 1.90 43.69 15 15 H -0.26 -11.05 7.11 99.48 0.71 -10.35 15 16 H -0.26 -10.80 7.11 99.48 0.71 -10.09 15 17 H -0.25 -9.87 6.52 99.48 0.65 -9.22 15 18 C -0.13 -3.68 5.84 30.77 0.18 -3.50 15 19 H 0.09 0.96 8.14 -2.39 -0.02 0.94 15 20 H 0.12 0.71 8.14 -2.39 -0.02 0.69 15 21 H 0.11 0.93 8.14 -2.39 -0.02 0.91 15 22 H 0.06 2.00 8.14 -2.38 -0.02 1.98 15 23 H 0.09 2.38 8.14 -2.39 -0.02 2.36 15 24 H 0.09 2.15 8.14 -2.39 -0.02 2.13 15 25 H 0.39 18.50 5.31 -92.70 -0.49 18.01 15 26 H 0.28 15.59 8.31 -92.71 -0.77 14.82 15 27 H 0.14 2.94 7.91 -2.39 -0.02 2.92 15 28 H 0.09 3.05 7.62 -2.38 -0.02 3.03 15 Total: -1.00 -76.69 248.85 4.11 -72.57 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.62 Total: 22.87 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 3.81 Total: 1.67 kcal Atomic # 7 Polarization: -95.63 SS G_CDS: -1.74 Total: -97.37 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -0.49 Total: -43.43 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 1.90 Total: 43.69 kcal Total: -76.69 4.11 -72.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336323317.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.622 kcal (2) G-P(sol) polarization free energy of solvation -76.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds