Wall clock time and date at job start Sun Mar 29 2020 22:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99828 * 2 1 4 4 C 1.50706 * 109.46702 * 179.97438 * 3 2 1 5 5 N 1.30273 * 126.27792 * 90.02619 * 4 3 2 6 6 N 1.28671 * 109.37805 * 179.97438 * 5 4 3 7 7 C 1.30279 * 109.38148 * 359.97438 * 6 5 4 8 8 C 1.50697 * 126.28332 * 179.97438 * 7 6 5 9 9 H 1.08996 * 109.47278 * 179.97438 * 8 7 6 10 10 C 1.52993 * 109.47293 * 299.97591 * 8 7 6 11 11 C 1.50707 * 109.46980 * 59.97807 * 8 7 6 12 12 H 1.08005 * 119.99759 * 359.97438 * 11 8 7 13 13 C 1.37874 * 119.99893 * 179.97438 * 11 8 7 14 14 N 1.31510 * 120.00400 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99935 * 179.97438 * 13 11 8 16 16 H 1.48498 * 109.47320 * 59.99849 * 15 13 11 17 17 H 1.48494 * 109.47374 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47088 * 299.99849 * 15 13 11 19 19 O 1.34353 * 126.28124 * 269.70861 * 4 3 2 20 20 H 1.09002 * 109.47018 * 59.99971 * 1 2 3 21 21 H 1.09002 * 109.47309 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47187 * 300.00778 * 1 2 3 23 23 H 1.09000 * 109.46890 * 59.99811 * 3 2 1 24 24 H 1.09000 * 109.47141 * 299.99454 * 3 2 1 25 25 H 1.08998 * 109.47340 * 60.00193 * 10 8 7 26 26 H 1.08998 * 109.47081 * 179.97438 * 10 8 7 27 27 H 1.09001 * 109.47505 * 299.99613 * 10 8 7 28 28 H 0.97002 * 120.00800 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2814 1.1259 -1.0492 6 7 5.5086 1.0290 -0.6747 7 6 5.5643 1.0251 0.6269 8 6 6.8123 0.9263 1.4658 9 1 6.5430 0.9486 2.5217 10 6 7.5356 -0.3847 1.1515 11 6 7.7202 2.0882 1.1543 12 1 7.4234 2.8242 0.4218 13 6 8.9298 2.2114 1.8045 14 7 9.2911 1.3154 2.6968 15 14 10.0555 3.6511 1.4179 16 1 9.3535 4.9239 1.7219 17 1 11.2852 3.5539 2.2446 18 1 10.4230 3.6198 -0.0206 19 8 4.3051 1.1293 1.0840 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.6885 1.8464 0.8900 24 1 1.6886 1.8464 -0.8900 25 1 7.8050 -0.4070 0.0956 26 1 8.4385 -0.4560 1.7580 27 1 6.8790 -1.2251 1.3768 28 1 10.1419 1.4023 3.1545 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346673934.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:50 Heat of formation + Delta-G solvation = -13.024663 kcal Electronic energy + Delta-G solvation = -13794.680731 eV Core-core repulsion = 11234.136825 eV Total energy + Delta-G solvation = -2560.543906 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.45034 -38.03883 -35.40519 -34.78742 -31.88133 -30.26276 -27.43483 -25.75363 -25.32932 -23.46496 -21.85649 -20.44125 -17.16497 -16.85488 -16.45170 -15.92465 -15.76059 -15.48499 -14.81714 -13.55413 -13.22947 -12.79601 -12.60046 -11.85178 -11.72531 -11.59056 -11.21694 -11.06035 -10.98030 -10.71447 -10.53263 -10.27755 -10.03627 -9.94371 -9.37647 -8.67230 -8.54602 -6.20602 -4.28568 1.75982 2.80950 3.14618 3.27354 3.30789 3.36058 3.88241 4.32202 4.50629 4.89439 5.03309 5.11753 5.14628 5.16689 5.45841 5.52191 5.99229 6.09714 6.40567 6.63589 6.82255 6.83384 6.91192 7.39070 7.65292 7.82285 8.02520 8.71342 9.08797 9.36555 10.86096 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.063264 B = 0.006770 C = 0.006536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.482344 B = 4134.681854 C = 4283.257104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.172 3.828 4 C 0.109 3.891 5 N -0.267 5.267 6 N -0.305 5.305 7 C 0.231 3.769 8 C 0.129 3.871 9 H 0.059 0.941 10 C -0.132 4.132 11 C -0.514 4.514 12 H 0.064 0.936 13 C 0.068 3.932 14 N -0.888 5.888 15 Si 0.907 3.093 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.273 1.273 19 O -0.229 6.229 20 H 0.046 0.954 21 H 0.090 0.910 22 H 0.045 0.955 23 H 0.079 0.921 24 H 0.094 0.906 25 H 0.045 0.955 26 H 0.101 0.899 27 H 0.014 0.986 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.991 -0.410 -1.505 13.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.303 6.303 3 C 0.094 3.906 4 C -0.103 4.103 5 N -0.118 5.118 6 N -0.151 5.151 7 C 0.023 3.977 8 C 0.109 3.891 9 H 0.077 0.923 10 C -0.190 4.190 11 C -0.552 4.552 12 H 0.082 0.918 13 C -0.135 4.135 14 N -0.525 5.525 15 Si 0.734 3.266 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.198 1.198 19 O -0.108 6.108 20 H 0.065 0.935 21 H 0.109 0.891 22 H 0.064 0.936 23 H 0.097 0.903 24 H 0.111 0.889 25 H 0.064 0.936 26 H 0.119 0.881 27 H 0.034 0.966 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.366 -0.659 -2.599 12.653 hybrid contribution -0.023 0.975 1.024 1.414 sum -12.389 0.316 -1.575 12.493 Atomic orbital electron populations 1.22798 0.79890 1.03314 1.00341 1.87984 1.20348 1.26476 1.95538 1.20349 0.81188 0.85949 1.03127 1.26939 0.96109 1.06175 0.81049 1.74257 0.97221 1.14111 1.26169 1.74431 1.10060 1.20390 1.10199 1.29753 0.84553 0.91465 0.91960 1.17812 0.81139 0.97346 0.92832 0.92348 1.21812 1.01847 0.93373 1.01956 1.20827 1.02439 1.07811 1.24166 0.91765 1.24890 0.97424 0.96754 0.94449 1.69847 1.22676 1.34497 1.25507 0.86393 0.79513 0.81981 0.78682 1.20089 1.20997 1.19812 1.84809 1.18826 1.69237 1.37950 0.93526 0.89136 0.93624 0.90269 0.88858 0.93623 0.88061 0.96647 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 15 2 O -0.39 -5.39 10.69 -35.23 -0.38 -5.77 15 3 C 0.17 2.32 6.56 36.01 0.24 2.56 15 4 C 0.11 2.14 8.11 -12.94 -0.10 2.03 15 5 N -0.27 -5.98 12.22 32.55 0.40 -5.58 15 6 N -0.31 -7.57 12.22 32.55 0.40 -7.17 15 7 C 0.23 5.63 6.92 -12.94 -0.09 5.54 15 8 C 0.13 3.28 2.77 -92.93 -0.26 3.03 15 9 H 0.06 1.52 8.14 -51.93 -0.42 1.10 15 10 C -0.13 -3.19 8.95 37.15 0.33 -2.85 15 11 C -0.51 -14.07 8.55 -34.44 -0.29 -14.36 15 12 H 0.06 1.80 7.74 -52.48 -0.41 1.39 15 13 C 0.07 1.81 5.30 -17.82 -0.09 1.71 15 14 N -0.89 -24.15 11.32 55.43 0.63 -23.52 15 15 Si 0.91 20.95 29.54 -169.99 -5.02 15.93 15 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 18 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 19 O -0.23 -5.04 10.87 5.40 0.06 -4.99 15 20 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 15 21 H 0.09 0.66 8.14 -51.93 -0.42 0.24 15 22 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 15 23 H 0.08 0.86 8.14 -51.93 -0.42 0.44 15 24 H 0.09 1.02 8.14 -51.93 -0.42 0.60 15 25 H 0.04 1.11 8.14 -51.93 -0.42 0.68 15 26 H 0.10 2.57 6.07 -51.93 -0.32 2.26 15 27 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 15 28 H 0.27 6.90 8.31 -40.82 -0.34 6.56 15 LS Contribution 253.62 15.07 3.82 3.82 Total: -1.00 -30.61 253.62 -2.49 -33.10 By element: Atomic # 1 Polarization: -1.64 SS G_CDS: -3.24 Total: -4.87 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 0.84 Total: -0.95 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 1.42 Total: -36.27 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -0.32 Total: -10.75 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.61 -2.49 -33.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346673934.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.076 kcal (2) G-P(sol) polarization free energy of solvation -30.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds