Wall clock time and date at job start Sun Mar 29 2020 22:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99828 * 2 1 4 4 C 1.50706 * 109.46702 * 179.97438 * 3 2 1 5 5 N 1.30273 * 126.27792 * 90.02619 * 4 3 2 6 6 N 1.28671 * 109.37805 * 179.97438 * 5 4 3 7 7 C 1.30279 * 109.38148 * 359.97438 * 6 5 4 8 8 C 1.50697 * 126.28332 * 179.97438 * 7 6 5 9 9 H 1.08996 * 109.47278 * 179.97438 * 8 7 6 10 10 C 1.52993 * 109.47293 * 299.97591 * 8 7 6 11 11 C 1.50707 * 109.46980 * 59.97807 * 8 7 6 12 12 H 1.08005 * 119.99759 * 359.97438 * 11 8 7 13 13 C 1.37874 * 119.99893 * 179.97438 * 11 8 7 14 14 N 1.31510 * 120.00400 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99935 * 179.97438 * 13 11 8 16 16 H 1.48498 * 109.47320 * 59.99849 * 15 13 11 17 17 H 1.48494 * 109.47374 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47088 * 299.99849 * 15 13 11 19 19 O 1.34353 * 126.28124 * 269.70861 * 4 3 2 20 20 H 1.09002 * 109.47018 * 59.99971 * 1 2 3 21 21 H 1.09002 * 109.47309 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47187 * 300.00778 * 1 2 3 23 23 H 1.09000 * 109.46890 * 59.99811 * 3 2 1 24 24 H 1.09000 * 109.47141 * 299.99454 * 3 2 1 25 25 H 1.08998 * 109.47340 * 60.00193 * 10 8 7 26 26 H 1.08998 * 109.47081 * 179.97438 * 10 8 7 27 27 H 1.09001 * 109.47505 * 299.99613 * 10 8 7 28 28 H 0.97002 * 120.00800 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2814 1.1259 -1.0492 6 7 5.5086 1.0290 -0.6747 7 6 5.5643 1.0251 0.6269 8 6 6.8123 0.9263 1.4658 9 1 6.5430 0.9486 2.5217 10 6 7.5356 -0.3847 1.1515 11 6 7.7202 2.0882 1.1543 12 1 7.4234 2.8242 0.4218 13 6 8.9298 2.2114 1.8045 14 7 9.2911 1.3154 2.6968 15 14 10.0555 3.6511 1.4179 16 1 9.3535 4.9239 1.7219 17 1 11.2852 3.5539 2.2446 18 1 10.4230 3.6198 -0.0206 19 8 4.3051 1.1293 1.0840 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.6885 1.8464 0.8900 24 1 1.6886 1.8464 -0.8900 25 1 7.8050 -0.4070 0.0956 26 1 8.4385 -0.4560 1.7580 27 1 6.8790 -1.2251 1.3768 28 1 10.1419 1.4023 3.1545 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346673934.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:50 Heat of formation + Delta-G solvation = -38.131308 kcal Electronic energy + Delta-G solvation = -13795.769437 eV Core-core repulsion = 11234.136825 eV Total energy + Delta-G solvation = -2561.632612 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -45.18609 -39.00177 -37.16248 -36.74630 -33.70935 -31.88472 -28.68603 -27.40442 -26.71659 -25.32524 -23.41041 -22.34557 -18.81517 -18.37516 -18.19540 -17.10537 -17.03504 -16.95803 -16.49300 -15.36086 -14.80739 -14.19628 -13.74243 -13.47574 -13.42693 -13.08240 -12.93116 -12.86734 -12.61867 -12.43616 -12.37746 -12.17550 -11.85848 -11.35831 -10.83150 -10.60814 -10.45522 -8.24670 -6.40274 0.13109 1.21954 1.40002 1.44087 1.46058 1.54527 2.39283 2.67773 3.05261 3.24481 3.57040 3.87999 4.08530 4.43140 4.49349 4.52638 4.59875 4.64005 4.70034 4.85211 4.88887 4.96278 5.35998 5.61893 5.77519 5.98717 6.00718 6.60798 7.27642 7.33960 8.81552 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.063264 B = 0.006770 C = 0.006536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.482344 B = 4134.681854 C = 4283.257104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.171 3.829 4 C 0.133 3.867 5 N -0.298 5.298 6 N -0.326 5.326 7 C 0.214 3.786 8 C 0.129 3.871 9 H 0.047 0.953 10 C -0.120 4.120 11 C -0.537 4.537 12 H 0.050 0.950 13 C 0.029 3.971 14 N -0.906 5.906 15 Si 0.967 3.033 16 H -0.271 1.271 17 H -0.273 1.273 18 H -0.274 1.274 19 O -0.233 6.233 20 H 0.065 0.935 21 H 0.100 0.900 22 H 0.064 0.936 23 H 0.112 0.888 24 H 0.123 0.877 25 H 0.036 0.964 26 H 0.088 0.912 27 H 0.033 0.967 28 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.319 0.203 -1.512 14.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.337 6.337 3 C 0.094 3.906 4 C -0.080 4.080 5 N -0.146 5.146 6 N -0.172 5.172 7 C 0.004 3.996 8 C 0.109 3.891 9 H 0.065 0.935 10 C -0.178 4.178 11 C -0.575 4.575 12 H 0.068 0.932 13 C -0.172 4.172 14 N -0.543 5.543 15 Si 0.791 3.209 16 H -0.196 1.196 17 H -0.198 1.198 18 H -0.199 1.199 19 O -0.113 6.113 20 H 0.083 0.917 21 H 0.118 0.882 22 H 0.083 0.917 23 H 0.129 0.871 24 H 0.141 0.859 25 H 0.055 0.945 26 H 0.106 0.894 27 H 0.052 0.948 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.716 -0.054 -2.620 13.964 hybrid contribution 0.215 0.751 1.022 1.286 sum -13.501 0.697 -1.598 13.614 Atomic orbital electron populations 1.23089 0.76976 1.04663 1.02195 1.87920 1.23376 1.26496 1.95936 1.20803 0.77043 0.86645 1.06143 1.28306 0.98231 1.01816 0.79597 1.74195 0.96721 1.16472 1.27187 1.74352 1.11684 1.20686 1.10465 1.29355 0.85107 0.93334 0.91843 1.17641 0.81790 0.97362 0.92323 0.93547 1.21646 1.01503 0.93690 1.00955 1.20962 1.03564 1.08478 1.24484 0.93201 1.25606 0.98414 0.99076 0.94124 1.69924 1.23140 1.35549 1.25735 0.85475 0.77969 0.79070 0.78390 1.19602 1.19764 1.19931 1.84810 1.18359 1.69319 1.38831 0.91656 0.88164 0.91733 0.87069 0.85930 0.94480 0.89394 0.94832 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 15 2 O -0.42 -10.57 10.69 -148.98 -1.59 -12.17 15 3 C 0.17 4.10 6.56 71.24 0.47 4.56 15 4 C 0.13 5.03 8.11 88.34 0.72 5.75 15 5 N -0.30 -13.17 12.22 -165.51 -2.02 -15.20 15 6 N -0.33 -16.35 12.22 -165.49 -2.02 -18.37 15 7 C 0.21 10.52 6.92 88.34 0.61 11.13 15 8 C 0.13 6.70 2.77 -12.29 -0.03 6.66 15 9 H 0.05 2.47 8.14 -2.39 -0.02 2.46 15 10 C -0.12 -5.87 8.95 71.98 0.64 -5.23 15 11 C -0.54 -29.83 8.55 25.60 0.22 -29.61 15 12 H 0.05 2.85 7.74 -2.91 -0.02 2.83 15 13 C 0.03 1.55 5.30 84.65 0.45 1.99 15 14 N -0.91 -49.34 11.32 21.45 0.24 -49.09 15 15 Si 0.97 42.71 29.54 68.60 2.03 44.73 15 16 H -0.27 -11.70 7.11 99.48 0.71 -11.00 15 17 H -0.27 -11.47 7.11 99.48 0.71 -10.76 15 18 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 19 O -0.23 -10.19 10.87 -3.60 -0.04 -10.23 15 20 H 0.06 0.67 8.14 -2.39 -0.02 0.65 15 21 H 0.10 1.19 8.14 -2.39 -0.02 1.17 15 22 H 0.06 0.66 8.14 -2.39 -0.02 0.64 15 23 H 0.11 1.97 8.14 -2.39 -0.02 1.95 15 24 H 0.12 2.23 8.14 -2.39 -0.02 2.21 15 25 H 0.04 1.82 8.14 -2.39 -0.02 1.80 15 26 H 0.09 4.53 6.07 -2.39 -0.01 4.52 15 27 H 0.03 1.46 8.14 -2.39 -0.02 1.44 15 28 H 0.27 13.92 8.31 -92.71 -0.77 13.15 15 Total: -1.00 -65.88 253.62 2.07 -63.81 By element: Atomic # 1 Polarization: -1.50 SS G_CDS: 1.16 Total: -0.34 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 4.32 Total: -3.13 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -3.80 Total: -82.66 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -1.63 Total: -22.40 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -65.88 2.07 -63.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346673934.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.676 kcal (2) G-P(sol) polarization free energy of solvation -65.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds