Wall clock time and date at job start Sun Mar 29 2020 22:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99769 * 2 1 4 4 C 1.50702 * 109.47343 * 180.02562 * 3 2 1 5 5 N 1.30273 * 126.28195 * 89.99717 * 4 3 2 6 6 N 1.28672 * 109.37589 * 179.73557 * 5 4 3 7 7 C 1.30272 * 109.38053 * 0.44531 * 6 5 4 8 8 C 1.50706 * 126.27746 * 179.82778 * 7 6 5 9 9 H 1.09001 * 109.46953 * 179.68726 * 8 7 6 10 10 C 1.52997 * 109.47238 * 59.69114 * 8 7 6 11 11 C 1.50697 * 109.47178 * 299.68589 * 8 7 6 12 12 H 1.07998 * 120.00039 * 0.02562 * 11 8 7 13 13 C 1.37880 * 119.99815 * 180.02562 * 11 8 7 14 14 N 1.31508 * 119.99915 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 119.99777 * 180.02562 * 13 11 8 16 16 H 1.48505 * 109.46998 * 89.99974 * 15 13 11 17 17 H 1.48499 * 109.47094 * 209.99977 * 15 13 11 18 18 H 1.48498 * 109.47121 * 330.00074 * 15 13 11 19 19 O 1.34354 * 107.43894 * 359.56344 * 7 6 5 20 20 H 1.09010 * 109.46594 * 299.99372 * 1 2 3 21 21 H 1.08995 * 109.47642 * 59.99605 * 1 2 3 22 22 H 1.09005 * 109.46855 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47273 * 60.00296 * 3 2 1 24 24 H 1.09004 * 109.47057 * 300.00829 * 3 2 1 25 25 H 1.09004 * 109.47261 * 59.99705 * 10 8 7 26 26 H 1.09002 * 109.47153 * 179.97438 * 10 8 7 27 27 H 1.09001 * 109.46832 * 299.99686 * 10 8 7 28 28 H 0.97001 * 119.99839 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2806 1.1259 -1.0511 6 7 5.5085 1.0344 -0.6775 7 6 5.5646 1.0240 0.6240 8 6 6.8134 0.9250 1.4619 9 1 6.5448 0.9461 2.5181 10 6 7.7343 2.1053 1.1462 11 6 7.5262 -0.3657 1.1505 12 1 7.1163 -1.0461 0.4188 13 6 8.7018 -0.6780 1.7999 14 7 9.2006 0.1503 2.6913 15 14 9.5857 -2.2776 1.4134 16 1 10.5477 -2.0560 0.3040 17 1 10.3186 -2.7419 2.6187 18 1 8.5937 -3.3065 1.0103 19 8 4.3056 1.1236 1.0822 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.6886 1.8464 0.8900 24 1 1.6884 1.8465 -0.8899 25 1 7.2187 3.0389 1.3714 26 1 8.6373 2.0339 1.7526 27 1 8.0029 2.0842 0.0900 28 1 10.0275 -0.0696 3.1483 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346673941.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:51 Heat of formation + Delta-G solvation = -12.861740 kcal Electronic energy + Delta-G solvation = -13809.653013 eV Core-core repulsion = 11249.116171 eV Total energy + Delta-G solvation = -2560.536842 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.45071 -38.02306 -35.40533 -34.78686 -31.87670 -30.26052 -27.42733 -25.74066 -25.33153 -23.46493 -21.85608 -20.44208 -17.21198 -16.75860 -16.46359 -15.92691 -15.75366 -15.49130 -14.80694 -13.54310 -13.22604 -12.78518 -12.59710 -11.82417 -11.71607 -11.61436 -11.20713 -11.07336 -10.97823 -10.69778 -10.53852 -10.27142 -10.02105 -9.92938 -9.36642 -8.67353 -8.54024 -6.20130 -4.27547 1.75174 2.84091 3.12574 3.27157 3.32980 3.39457 3.89665 4.33476 4.50551 4.89159 5.02992 5.12526 5.15400 5.17791 5.47959 5.52195 5.99193 6.09736 6.40261 6.61604 6.81568 6.85111 6.89697 7.38821 7.65271 7.83058 8.02837 8.73008 9.08727 9.37634 10.86671 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.045205 B = 0.007320 C = 0.006818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.250307 B = 3824.087682 C = 4105.913794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.172 3.828 4 C 0.109 3.891 5 N -0.267 5.267 6 N -0.305 5.305 7 C 0.231 3.769 8 C 0.128 3.872 9 H 0.059 0.941 10 C -0.132 4.132 11 C -0.512 4.512 12 H 0.065 0.935 13 C 0.067 3.933 14 N -0.888 5.888 15 Si 0.908 3.092 16 H -0.276 1.276 17 H -0.284 1.284 18 H -0.272 1.272 19 O -0.229 6.229 20 H 0.045 0.955 21 H 0.046 0.954 22 H 0.090 0.910 23 H 0.079 0.921 24 H 0.093 0.907 25 H 0.014 0.986 26 H 0.101 0.899 27 H 0.045 0.955 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.743 2.826 -1.510 13.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.302 6.302 3 C 0.094 3.906 4 C -0.103 4.103 5 N -0.117 5.117 6 N -0.151 5.151 7 C 0.023 3.977 8 C 0.108 3.892 9 H 0.077 0.923 10 C -0.190 4.190 11 C -0.551 4.551 12 H 0.083 0.917 13 C -0.135 4.135 14 N -0.526 5.526 15 Si 0.735 3.265 16 H -0.202 1.202 17 H -0.210 1.210 18 H -0.197 1.197 19 O -0.108 6.108 20 H 0.064 0.936 21 H 0.065 0.935 22 H 0.109 0.891 23 H 0.097 0.903 24 H 0.111 0.889 25 H 0.033 0.967 26 H 0.119 0.881 27 H 0.064 0.936 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.119 2.650 -2.605 12.676 hybrid contribution -0.143 -0.623 1.026 1.209 sum -12.262 2.027 -1.579 12.528 Atomic orbital electron populations 1.22800 0.79912 1.03350 1.00277 1.88008 1.20321 1.26385 1.95514 1.20346 0.81193 0.86037 1.03025 1.26963 0.96128 1.06166 0.81052 1.74254 0.97238 1.14095 1.26150 1.74427 1.10109 1.20352 1.10221 1.29749 0.84688 0.91337 0.91944 1.17822 0.80806 0.97678 0.92854 0.92344 1.21818 1.01714 0.93493 1.01960 1.20864 1.07720 1.02321 1.24158 0.91702 1.24890 0.96633 0.97585 0.94431 1.69857 1.21029 1.36065 1.25643 0.86325 0.79608 0.82710 0.77895 1.20227 1.20971 1.19701 1.84809 1.18847 1.69193 1.37969 0.93641 0.93549 0.89124 0.90327 0.88896 0.96717 0.88067 0.93608 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 15 2 O -0.38 -5.55 10.69 -35.23 -0.38 -5.92 15 3 C 0.17 2.32 6.56 36.01 0.24 2.56 15 4 C 0.11 2.13 8.11 -12.94 -0.10 2.03 15 5 N -0.27 -5.97 12.22 32.55 0.40 -5.57 15 6 N -0.31 -7.57 12.22 32.55 0.40 -7.17 15 7 C 0.23 5.63 6.92 -12.94 -0.09 5.54 15 8 C 0.13 3.27 2.77 -92.92 -0.26 3.02 15 9 H 0.06 1.52 8.14 -51.93 -0.42 1.10 15 10 C -0.13 -3.14 8.95 37.16 0.33 -2.81 15 11 C -0.51 -14.16 8.55 -34.44 -0.29 -14.45 15 12 H 0.06 1.85 7.74 -52.49 -0.41 1.45 15 13 C 0.07 1.81 5.30 -17.82 -0.09 1.72 15 14 N -0.89 -24.22 11.32 55.43 0.63 -23.59 15 15 Si 0.91 21.17 29.54 -169.99 -5.02 16.15 15 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 18 H -0.27 -6.39 7.11 56.52 0.40 -5.98 15 19 O -0.23 -5.04 10.87 5.40 0.06 -4.99 15 20 H 0.04 0.33 8.14 -51.92 -0.42 -0.10 15 21 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 15 22 H 0.09 0.71 8.14 -51.93 -0.42 0.28 15 23 H 0.08 0.84 8.14 -51.93 -0.42 0.42 15 24 H 0.09 1.01 8.14 -51.93 -0.42 0.58 15 25 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 15 26 H 0.10 2.55 6.07 -51.93 -0.32 2.24 15 27 H 0.04 1.10 8.14 -51.93 -0.42 0.67 15 28 H 0.27 6.87 8.31 -40.82 -0.34 6.53 15 LS Contribution 253.62 15.07 3.82 3.82 Total: -1.00 -30.87 253.62 -2.49 -33.36 By element: Atomic # 1 Polarization: -1.86 SS G_CDS: -3.24 Total: -5.10 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 0.84 Total: -1.00 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 1.42 Total: -36.33 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -0.32 Total: -10.91 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.87 -2.49 -33.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346673941.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.501 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds