Wall clock time and date at job start Sun Mar 29 2020 22:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99769 * 2 1 4 4 C 1.50702 * 109.47343 * 180.02562 * 3 2 1 5 5 N 1.30273 * 126.28195 * 89.99717 * 4 3 2 6 6 N 1.28672 * 109.37589 * 179.73557 * 5 4 3 7 7 C 1.30272 * 109.38053 * 0.44531 * 6 5 4 8 8 C 1.50706 * 126.27746 * 179.82778 * 7 6 5 9 9 H 1.09001 * 109.46953 * 179.68726 * 8 7 6 10 10 C 1.52997 * 109.47238 * 59.69114 * 8 7 6 11 11 C 1.50697 * 109.47178 * 299.68589 * 8 7 6 12 12 H 1.07998 * 120.00039 * 0.02562 * 11 8 7 13 13 C 1.37880 * 119.99815 * 180.02562 * 11 8 7 14 14 N 1.31508 * 119.99915 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 119.99777 * 180.02562 * 13 11 8 16 16 H 1.48505 * 109.46998 * 89.99974 * 15 13 11 17 17 H 1.48499 * 109.47094 * 209.99977 * 15 13 11 18 18 H 1.48498 * 109.47121 * 330.00074 * 15 13 11 19 19 O 1.34354 * 107.43894 * 359.56344 * 7 6 5 20 20 H 1.09010 * 109.46594 * 299.99372 * 1 2 3 21 21 H 1.08995 * 109.47642 * 59.99605 * 1 2 3 22 22 H 1.09005 * 109.46855 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47273 * 60.00296 * 3 2 1 24 24 H 1.09004 * 109.47057 * 300.00829 * 3 2 1 25 25 H 1.09004 * 109.47261 * 59.99705 * 10 8 7 26 26 H 1.09002 * 109.47153 * 179.97438 * 10 8 7 27 27 H 1.09001 * 109.46832 * 299.99686 * 10 8 7 28 28 H 0.97001 * 119.99839 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2806 1.1259 -1.0511 6 7 5.5085 1.0344 -0.6775 7 6 5.5646 1.0240 0.6240 8 6 6.8134 0.9250 1.4619 9 1 6.5448 0.9461 2.5181 10 6 7.7343 2.1053 1.1462 11 6 7.5262 -0.3657 1.1505 12 1 7.1163 -1.0461 0.4188 13 6 8.7018 -0.6780 1.7999 14 7 9.2006 0.1503 2.6913 15 14 9.5857 -2.2776 1.4134 16 1 10.5477 -2.0560 0.3040 17 1 10.3186 -2.7419 2.6187 18 1 8.5937 -3.3065 1.0103 19 8 4.3056 1.1236 1.0822 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.6886 1.8464 0.8900 24 1 1.6884 1.8465 -0.8899 25 1 7.2187 3.0389 1.3714 26 1 8.6373 2.0339 1.7526 27 1 8.0029 2.0842 0.0900 28 1 10.0275 -0.0696 3.1483 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346673941.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:51 Heat of formation + Delta-G solvation = -38.280743 kcal Electronic energy + Delta-G solvation = -13810.755264 eV Core-core repulsion = 11249.116171 eV Total energy + Delta-G solvation = -2561.639092 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -45.18443 -39.00467 -37.16082 -36.74743 -33.71257 -31.88299 -28.68349 -27.40234 -26.72249 -25.32226 -23.40920 -22.34363 -18.84798 -18.29669 -18.22920 -17.16913 -17.01589 -16.94253 -16.49454 -15.35677 -14.82523 -14.15277 -13.76520 -13.46558 -13.43697 -13.07903 -12.93364 -12.86940 -12.60317 -12.45524 -12.37694 -12.19340 -11.83912 -11.35371 -10.83063 -10.61410 -10.45514 -8.25728 -6.40786 0.12339 1.26136 1.36140 1.42509 1.44956 1.55457 2.38953 2.68891 3.04242 3.24195 3.57356 3.88494 4.08437 4.43523 4.49626 4.51591 4.59765 4.64093 4.71255 4.85493 4.88263 4.97016 5.36748 5.62262 5.78290 5.99675 6.01310 6.60124 7.27084 7.34076 8.80569 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.045205 B = 0.007320 C = 0.006818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.250307 B = 3824.087682 C = 4105.913794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.171 3.829 4 C 0.132 3.868 5 N -0.297 5.297 6 N -0.327 5.327 7 C 0.214 3.786 8 C 0.129 3.871 9 H 0.047 0.953 10 C -0.119 4.119 11 C -0.537 4.537 12 H 0.045 0.955 13 C 0.030 3.970 14 N -0.904 5.904 15 Si 0.966 3.034 16 H -0.272 1.272 17 H -0.271 1.271 18 H -0.276 1.276 19 O -0.233 6.233 20 H 0.065 0.935 21 H 0.066 0.934 22 H 0.098 0.902 23 H 0.113 0.887 24 H 0.125 0.875 25 H 0.036 0.964 26 H 0.086 0.914 27 H 0.036 0.964 28 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.078 2.860 -1.470 14.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.340 6.340 3 C 0.093 3.907 4 C -0.080 4.080 5 N -0.146 5.146 6 N -0.172 5.172 7 C 0.004 3.996 8 C 0.109 3.891 9 H 0.065 0.935 10 C -0.177 4.177 11 C -0.575 4.575 12 H 0.064 0.936 13 C -0.171 4.171 14 N -0.542 5.542 15 Si 0.790 3.210 16 H -0.197 1.197 17 H -0.196 1.196 18 H -0.201 1.201 19 O -0.113 6.113 20 H 0.084 0.916 21 H 0.085 0.915 22 H 0.116 0.884 23 H 0.131 0.869 24 H 0.142 0.858 25 H 0.056 0.944 26 H 0.105 0.895 27 H 0.055 0.945 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.471 2.695 -2.578 13.978 hybrid contribution 0.103 -0.619 1.010 1.190 sum -13.367 2.076 -1.568 13.618 Atomic orbital electron populations 1.23085 0.76962 1.04582 1.02255 1.87937 1.23418 1.26723 1.95943 1.20832 0.77011 0.86567 1.06259 1.28336 0.98259 1.01814 0.79596 1.74191 0.96745 1.16452 1.27182 1.74347 1.11744 1.20634 1.10492 1.29357 0.85249 0.93195 0.91832 1.17652 0.81664 0.97490 0.92337 0.93532 1.21642 1.01020 0.94097 1.00950 1.20971 1.08767 1.03276 1.24482 0.93618 1.25579 0.96954 1.00462 0.94122 1.69924 1.21327 1.37188 1.25752 0.85437 0.78390 0.78966 0.78178 1.19700 1.19582 1.20144 1.84810 1.18382 1.69279 1.38852 0.91631 0.91543 0.88397 0.86879 0.85774 0.94448 0.89494 0.94452 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 15 2 O -0.42 -11.08 10.69 -148.98 -1.59 -12.67 15 3 C 0.17 4.08 6.56 71.24 0.47 4.55 15 4 C 0.13 5.01 8.11 88.34 0.72 5.73 15 5 N -0.30 -13.18 12.22 -165.50 -2.02 -15.20 15 6 N -0.33 -16.37 12.22 -165.51 -2.02 -18.39 15 7 C 0.21 10.52 6.92 88.34 0.61 11.13 15 8 C 0.13 6.68 2.77 -12.29 -0.03 6.64 15 9 H 0.05 2.48 8.14 -2.39 -0.02 2.46 15 10 C -0.12 -5.73 8.95 71.98 0.64 -5.09 15 11 C -0.54 -30.24 8.55 25.60 0.22 -30.02 15 12 H 0.05 2.69 7.74 -2.91 -0.02 2.66 15 13 C 0.03 1.62 5.30 84.66 0.45 2.07 15 14 N -0.90 -49.29 11.32 21.45 0.24 -49.04 15 15 Si 0.97 43.31 29.54 68.60 2.03 45.34 15 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 17 H -0.27 -11.51 7.11 99.48 0.71 -10.81 15 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 15 19 O -0.23 -10.20 10.87 -3.59 -0.04 -10.24 15 20 H 0.07 0.70 8.14 -2.38 -0.02 0.68 15 21 H 0.07 0.70 8.14 -2.39 -0.02 0.68 15 22 H 0.10 1.27 8.14 -2.38 -0.02 1.25 15 23 H 0.11 1.94 8.14 -2.39 -0.02 1.92 15 24 H 0.12 2.20 8.14 -2.38 -0.02 2.18 15 25 H 0.04 1.57 8.14 -2.38 -0.02 1.55 15 26 H 0.09 4.43 6.07 -2.39 -0.01 4.41 15 27 H 0.04 1.81 8.14 -2.39 -0.02 1.79 15 28 H 0.27 13.89 8.31 -92.71 -0.77 13.12 15 Total: -1.00 -66.73 253.62 2.07 -64.66 By element: Atomic # 1 Polarization: -2.27 SS G_CDS: 1.16 Total: -1.11 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 4.32 Total: -3.36 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -3.80 Total: -82.63 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -1.63 Total: -22.91 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -66.73 2.07 -64.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346673941.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.382 kcal (2) G-P(sol) polarization free energy of solvation -66.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds