Wall clock time and date at job start Sun Mar 29 2020 21:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 110.43346 * 2 1 4 4 O 1.21293 * 119.99482 * 241.08389 * 3 2 1 5 5 N 1.34777 * 120.00290 * 61.08826 * 3 2 1 6 6 C 1.37092 * 119.99729 * 180.27555 * 5 3 2 7 7 H 1.08002 * 120.00496 * 359.72414 * 6 5 3 8 8 C 1.38958 * 120.00096 * 179.72242 * 6 5 3 9 9 N 1.31414 * 119.99347 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00310 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47201 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47346 * 119.99877 * 10 8 6 13 13 H 1.48506 * 109.46753 * 239.99977 * 10 8 6 14 14 C 1.54620 * 110.60100 * 237.37956 * 2 1 3 15 15 C 1.54479 * 101.76629 * 216.47215 * 14 2 1 16 16 N 1.46759 * 105.47337 * 25.41079 * 15 14 2 17 17 C 1.34414 * 111.30393 * 342.98819 * 16 15 14 18 18 O 1.21279 * 124.94695 * 180.44195 * 17 16 15 19 19 H 1.09002 * 109.47009 * 60.69976 * 1 2 3 20 20 H 1.08993 * 109.47589 * 180.70484 * 1 2 3 21 21 H 1.09005 * 109.47167 * 300.70357 * 1 2 3 22 22 H 0.97001 * 119.99727 * 359.97438 * 5 3 2 23 23 H 0.97004 * 119.99790 * 179.97438 * 9 8 6 24 24 H 1.09009 * 110.96807 * 334.58933 * 14 2 1 25 25 H 1.08998 * 110.97297 * 98.34682 * 14 2 1 26 26 H 1.09000 * 110.24261 * 266.41491 * 15 14 2 27 27 H 1.09002 * 110.32247 * 144.45710 * 15 14 2 28 28 H 0.96996 * 124.34817 * 162.96524 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0561 1.4122 0.0000 4 8 2.7438 1.8031 -0.9195 5 7 1.7626 2.2407 1.0217 6 6 2.2366 3.5271 1.0188 7 1 2.8489 3.8753 0.2001 8 6 1.9293 4.3832 2.0694 9 7 1.1838 3.9597 3.0653 10 14 2.5745 6.1362 2.0652 11 1 3.3828 6.3632 0.8403 12 1 1.4318 7.0843 2.0875 13 1 3.4224 6.3544 3.2647 14 6 2.0740 -0.7802 -1.2190 15 6 3.3233 -1.4657 -0.6224 16 7 3.0582 -1.5785 0.8167 17 6 2.0595 -0.7622 1.1948 18 8 1.6437 -0.6522 2.3287 19 1 -0.3633 0.5029 -0.8962 20 1 -0.3634 -1.0275 0.0126 21 1 -0.3634 0.5247 0.8836 22 1 1.2124 1.9282 1.7569 23 1 0.9696 4.5571 3.7989 24 1 1.3507 -1.5193 -1.5636 25 1 2.3496 -0.1009 -2.0257 26 1 4.2084 -0.8537 -0.7960 27 1 3.4576 -2.4549 -1.0600 28 1 3.5414 -2.1668 1.4177 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348937872.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:48 Heat of formation + Delta-G solvation = -79.220724 kcal Electronic energy + Delta-G solvation = -14501.307464 eV Core-core repulsion = 11937.893081 eV Total energy + Delta-G solvation = -2563.414383 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.48369 -37.64788 -35.91956 -33.92561 -32.65745 -31.10986 -28.40656 -25.43860 -24.67551 -21.86481 -20.93070 -18.47322 -17.85272 -16.93678 -16.57950 -14.97054 -14.66300 -14.15693 -14.04303 -13.77470 -13.29691 -13.08132 -12.72181 -12.22127 -11.81579 -11.77167 -11.59040 -11.11425 -10.93112 -10.74472 -10.33570 -10.21317 -9.55484 -9.37303 -8.84116 -8.40776 -7.98617 -6.41294 -3.83404 2.91603 3.17040 3.26915 3.34056 3.57999 3.87326 4.16470 4.66849 4.79184 4.87169 5.18346 5.26494 5.44930 5.68641 5.72471 5.92072 6.04649 6.17563 6.31843 6.42786 6.56440 7.06606 7.26281 7.54070 8.03207 8.57350 8.59281 9.13851 9.52817 10.01219 10.75103 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.044365 B = 0.009667 C = 0.009084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.982322 B = 2895.773549 C = 3081.537693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.109 4.109 3 C 0.451 3.549 4 O -0.592 6.592 5 N -0.543 5.543 6 C -0.307 4.307 7 H 0.106 0.894 8 C 0.025 3.975 9 N -0.889 5.889 10 Si 0.932 3.068 11 H -0.267 1.267 12 H -0.280 1.280 13 H -0.281 1.281 14 C -0.114 4.114 15 C 0.104 3.896 16 N -0.735 5.735 17 C 0.531 3.469 18 O -0.521 6.521 19 H 0.068 0.932 20 H 0.058 0.942 21 H 0.071 0.929 22 H 0.400 0.600 23 H 0.273 0.727 24 H 0.079 0.921 25 H 0.108 0.892 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.623 -9.632 -5.579 11.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.116 4.116 3 C 0.235 3.765 4 O -0.478 6.478 5 N -0.177 5.177 6 C -0.436 4.436 7 H 0.123 0.877 8 C -0.178 4.178 9 N -0.528 5.528 10 Si 0.758 3.242 11 H -0.191 1.191 12 H -0.206 1.206 13 H -0.207 1.207 14 C -0.152 4.152 15 C -0.020 4.020 16 N -0.390 5.390 17 C 0.316 3.684 18 O -0.396 6.396 19 H 0.087 0.913 20 H 0.077 0.923 21 H 0.090 0.910 22 H 0.235 0.765 23 H 0.083 0.917 24 H 0.097 0.903 25 H 0.126 0.874 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 0.721 -9.107 -5.461 10.643 hybrid contribution 0.259 0.368 0.805 0.922 sum 0.980 -8.739 -4.656 9.950 Atomic orbital electron populations 1.21637 0.90975 1.02083 1.03582 1.21497 0.98562 0.96318 0.95207 1.18935 0.86738 0.85494 0.85332 1.90488 1.43409 1.76515 1.37392 1.41916 1.44952 1.11257 1.19568 1.19809 1.29911 0.86638 1.07260 0.87653 1.25365 0.96705 1.00590 0.95145 1.69672 1.36332 1.37122 1.09705 0.85773 0.78554 0.81389 0.78437 1.19116 1.20589 1.20655 1.22598 0.96039 0.98867 0.97732 1.22047 0.99297 1.00694 0.79966 1.46134 1.37615 1.44389 1.10909 1.20631 0.79457 0.78941 0.89349 1.90752 1.61508 1.65795 1.21510 0.91259 0.92284 0.91034 0.76544 0.91680 0.90271 0.87378 0.90769 0.90689 0.75588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.10 8.33 37.16 0.31 -1.79 15 2 C -0.11 -2.07 0.74 -155.67 -0.12 -2.18 15 3 C 0.45 11.03 6.50 -10.98 -0.07 10.95 15 4 O -0.59 -15.76 15.03 5.55 0.08 -15.68 15 5 N -0.54 -14.70 5.14 -10.96 -0.06 -14.75 15 6 C -0.31 -8.82 9.68 -14.93 -0.14 -8.96 15 7 H 0.11 3.11 7.16 -52.49 -0.38 2.73 15 8 C 0.03 0.70 5.50 -17.46 -0.10 0.60 15 9 N -0.89 -25.33 13.05 55.50 0.72 -24.60 15 10 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 15 11 H -0.27 -6.05 7.11 56.52 0.40 -5.64 15 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 14 C -0.11 -1.68 6.05 -25.10 -0.15 -1.83 15 15 C 0.10 1.37 7.78 -3.12 -0.02 1.34 15 16 N -0.73 -11.16 6.24 -59.20 -0.37 -11.53 15 17 C 0.53 10.39 7.08 -10.86 -0.08 10.31 15 18 O -0.52 -11.99 17.69 5.56 0.10 -11.89 15 19 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 20 H 0.06 0.83 8.14 -51.93 -0.42 0.40 15 21 H 0.07 1.33 7.70 -51.93 -0.40 0.94 15 22 H 0.40 10.99 7.24 -40.82 -0.30 10.70 15 23 H 0.27 7.27 8.31 -40.82 -0.34 6.93 15 24 H 0.08 0.92 7.92 -51.92 -0.41 0.51 15 25 H 0.11 1.72 6.91 -51.93 -0.36 1.36 15 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 15 28 H 0.41 5.15 8.96 -40.82 -0.37 4.78 15 LS Contribution 246.46 15.07 3.71 3.71 Total: -1.00 -33.29 246.46 -4.23 -37.52 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -3.03 Total: 12.47 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -0.37 Total: 8.44 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: 0.30 Total: -50.89 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: 0.18 Total: -27.56 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -33.29 -4.23 -37.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348937872.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.699 kcal (2) G-P(sol) polarization free energy of solvation -33.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds