Wall clock time and date at job start Sun Mar 29 2020 21:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 110.43346 * 2 1 4 4 O 1.21293 * 119.99482 * 241.08389 * 3 2 1 5 5 N 1.34777 * 120.00290 * 61.08826 * 3 2 1 6 6 C 1.37092 * 119.99729 * 180.27555 * 5 3 2 7 7 H 1.08002 * 120.00496 * 359.72414 * 6 5 3 8 8 C 1.38958 * 120.00096 * 179.72242 * 6 5 3 9 9 N 1.31414 * 119.99347 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00310 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47201 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47346 * 119.99877 * 10 8 6 13 13 H 1.48506 * 109.46753 * 239.99977 * 10 8 6 14 14 C 1.54620 * 110.60100 * 237.37956 * 2 1 3 15 15 C 1.54479 * 101.76629 * 216.47215 * 14 2 1 16 16 N 1.46759 * 105.47337 * 25.41079 * 15 14 2 17 17 C 1.34414 * 111.30393 * 342.98819 * 16 15 14 18 18 O 1.21279 * 124.94695 * 180.44195 * 17 16 15 19 19 H 1.09002 * 109.47009 * 60.69976 * 1 2 3 20 20 H 1.08993 * 109.47589 * 180.70484 * 1 2 3 21 21 H 1.09005 * 109.47167 * 300.70357 * 1 2 3 22 22 H 0.97001 * 119.99727 * 359.97438 * 5 3 2 23 23 H 0.97004 * 119.99790 * 179.97438 * 9 8 6 24 24 H 1.09009 * 110.96807 * 334.58933 * 14 2 1 25 25 H 1.08998 * 110.97297 * 98.34682 * 14 2 1 26 26 H 1.09000 * 110.24261 * 266.41491 * 15 14 2 27 27 H 1.09002 * 110.32247 * 144.45710 * 15 14 2 28 28 H 0.96996 * 124.34817 * 162.96524 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0561 1.4122 0.0000 4 8 2.7438 1.8031 -0.9195 5 7 1.7626 2.2407 1.0217 6 6 2.2366 3.5271 1.0188 7 1 2.8489 3.8753 0.2001 8 6 1.9293 4.3832 2.0694 9 7 1.1838 3.9597 3.0653 10 14 2.5745 6.1362 2.0652 11 1 3.3828 6.3632 0.8403 12 1 1.4318 7.0843 2.0875 13 1 3.4224 6.3544 3.2647 14 6 2.0740 -0.7802 -1.2190 15 6 3.3233 -1.4657 -0.6224 16 7 3.0582 -1.5785 0.8167 17 6 2.0595 -0.7622 1.1948 18 8 1.6437 -0.6522 2.3287 19 1 -0.3633 0.5029 -0.8962 20 1 -0.3634 -1.0275 0.0126 21 1 -0.3634 0.5247 0.8836 22 1 1.2124 1.9282 1.7569 23 1 0.9696 4.5571 3.7989 24 1 1.3507 -1.5193 -1.5636 25 1 2.3496 -0.1009 -2.0257 26 1 4.2084 -0.8537 -0.7960 27 1 3.4576 -2.4549 -1.0600 28 1 3.5414 -2.1668 1.4177 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348937872.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:47 Heat of formation + Delta-G solvation = -106.491119 kcal Electronic energy + Delta-G solvation = -14502.489997 eV Core-core repulsion = 11937.893081 eV Total energy + Delta-G solvation = -2564.596916 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.00703 -39.52867 -37.42822 -35.98199 -34.18110 -33.12238 -29.67965 -27.32817 -26.23252 -23.33846 -22.47330 -20.34852 -19.74928 -18.36575 -18.20991 -16.89858 -16.22441 -15.91110 -15.79886 -15.29766 -14.77554 -14.65211 -14.48900 -13.60382 -13.48250 -13.24352 -13.16398 -12.94843 -12.48627 -12.22254 -12.10167 -12.02074 -11.56900 -10.94396 -10.39773 -10.10522 -10.07585 -8.51374 -6.03537 1.27153 1.38523 1.43442 1.55505 1.91874 2.26245 2.41491 3.04286 3.15220 3.38846 3.55628 3.90458 4.20473 4.26740 4.47404 4.68809 4.76416 4.79377 5.06905 5.14328 5.23880 5.34917 5.78030 5.90333 5.98178 6.47386 7.01729 7.19876 7.45700 7.95855 8.66048 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.044365 B = 0.009667 C = 0.009084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.982322 B = 2895.773549 C = 3081.537693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.112 4.112 3 C 0.451 3.549 4 O -0.617 6.617 5 N -0.561 5.561 6 C -0.342 4.342 7 H 0.089 0.911 8 C -0.017 4.017 9 N -0.920 5.920 10 Si 1.003 2.997 11 H -0.266 1.266 12 H -0.267 1.267 13 H -0.272 1.272 14 C -0.108 4.108 15 C 0.102 3.898 16 N -0.716 5.716 17 C 0.522 3.478 18 O -0.565 6.565 19 H 0.078 0.922 20 H 0.094 0.906 21 H 0.043 0.957 22 H 0.394 0.606 23 H 0.279 0.721 24 H 0.123 0.877 25 H 0.095 0.905 26 H 0.063 0.937 27 H 0.130 0.870 28 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.935 -10.768 -6.590 12.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.119 4.119 3 C 0.237 3.763 4 O -0.504 6.504 5 N -0.195 5.195 6 C -0.471 4.471 7 H 0.107 0.893 8 C -0.217 4.217 9 N -0.559 5.559 10 Si 0.825 3.175 11 H -0.190 1.190 12 H -0.192 1.192 13 H -0.197 1.197 14 C -0.146 4.146 15 C -0.021 4.021 16 N -0.372 5.372 17 C 0.307 3.693 18 O -0.444 6.444 19 H 0.097 0.903 20 H 0.113 0.887 21 H 0.062 0.938 22 H 0.228 0.772 23 H 0.089 0.911 24 H 0.141 0.859 25 H 0.113 0.887 26 H 0.081 0.919 27 H 0.148 0.852 28 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 1.060 -10.288 -6.505 12.218 hybrid contribution 0.194 0.635 1.048 1.241 sum 1.254 -9.652 -5.457 11.159 Atomic orbital electron populations 1.21655 0.89463 1.04138 1.02744 1.21562 0.99918 0.92880 0.97557 1.19915 0.85157 0.87396 0.83800 1.90458 1.44123 1.77897 1.37970 1.42055 1.45739 1.11411 1.20331 1.19879 1.31313 0.88154 1.07772 0.89318 1.26299 0.96440 1.04700 0.94224 1.69763 1.37113 1.38791 1.10282 0.84739 0.78265 0.75963 0.78519 1.19019 1.19223 1.19705 1.22709 0.97552 0.99029 0.95320 1.22304 0.97959 1.03399 0.78429 1.46107 1.35819 1.42935 1.12298 1.20772 0.80327 0.79536 0.88701 1.90726 1.63231 1.67390 1.23068 0.90264 0.88680 0.93801 0.77172 0.91120 0.85922 0.88682 0.91898 0.85221 0.73977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.97 8.33 71.98 0.60 -3.37 15 2 C -0.11 -4.15 0.74 -52.94 -0.04 -4.19 15 3 C 0.45 22.40 6.50 87.66 0.57 22.97 15 4 O -0.62 -33.34 15.03 -3.07 -0.05 -33.38 15 5 N -0.56 -31.42 5.14 -306.98 -1.58 -33.00 15 6 C -0.34 -20.30 9.68 84.04 0.81 -19.48 15 7 H 0.09 5.43 7.16 -2.91 -0.02 5.41 15 8 C -0.02 -0.93 5.50 84.93 0.47 -0.46 15 9 N -0.92 -53.42 13.05 21.67 0.28 -53.14 15 10 Si 1.00 44.09 29.55 68.60 2.03 46.11 15 11 H -0.27 -11.52 7.11 99.48 0.71 -10.82 15 12 H -0.27 -11.14 7.11 99.48 0.71 -10.43 15 13 H -0.27 -11.50 7.11 99.48 0.71 -10.79 15 14 C -0.11 -2.84 6.05 31.65 0.19 -2.65 15 15 C 0.10 2.30 7.78 86.83 0.68 2.98 15 16 N -0.72 -19.98 6.24 -459.82 -2.87 -22.85 15 17 C 0.52 19.93 7.08 87.90 0.62 20.55 15 18 O -0.57 -26.30 17.69 -3.03 -0.05 -26.36 15 19 H 0.08 2.37 8.14 -2.39 -0.02 2.35 15 20 H 0.09 2.39 8.14 -2.39 -0.02 2.37 15 21 H 0.04 1.65 7.70 -2.38 -0.02 1.64 15 22 H 0.39 22.64 7.24 -92.71 -0.67 21.97 15 23 H 0.28 15.01 8.31 -92.71 -0.77 14.24 15 24 H 0.12 2.19 7.92 -2.38 -0.02 2.17 15 25 H 0.09 2.82 6.91 -2.39 -0.02 2.80 15 26 H 0.06 1.61 8.14 -2.39 -0.02 1.59 15 27 H 0.13 1.63 8.14 -2.39 -0.02 1.61 15 28 H 0.42 9.56 8.96 -92.71 -0.83 8.73 15 Total: -1.00 -74.78 246.46 1.36 -73.42 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: -0.30 Total: 32.83 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: 3.90 Total: 16.35 kcal Atomic # 7 Polarization: -104.82 SS G_CDS: -4.16 Total: -108.98 kcal Atomic # 8 Polarization: -59.64 SS G_CDS: -0.10 Total: -59.74 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -74.78 1.36 -73.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348937872.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.070 kcal (2) G-P(sol) polarization free energy of solvation -74.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds