Wall clock time and date at job start Sun Mar 29 2020 21:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31438 * 1 3 3 Si 1.86805 * 120.00101 * 2 1 4 4 H 1.48498 * 109.47174 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47031 * 300.00437 * 3 2 1 6 6 H 1.48505 * 109.46858 * 60.00220 * 3 2 1 7 7 C 1.38752 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00052 * 179.97438 * 7 2 1 9 9 O 1.34922 * 120.00163 * 0.02562 * 7 2 1 10 10 C 1.34308 * 117.00061 * 180.02562 * 9 7 2 11 11 O 1.21208 * 120.00236 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99862 * 179.97438 * 10 9 7 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 10 9 14 14 N 1.46500 * 109.47473 * 179.97438 * 13 12 10 15 15 C 1.34597 * 126.43783 * 125.00017 * 14 13 12 16 16 N 1.31072 * 106.67933 * 180.02562 * 15 14 13 17 17 N 1.28839 * 107.98903 * 359.97438 * 16 15 14 18 18 N 1.28743 * 109.40039 * 359.73711 * 17 16 15 19 19 H 0.97000 * 119.99981 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99738 * 12 10 9 21 21 H 1.09001 * 109.47380 * 59.99825 * 12 10 9 22 22 H 1.09002 * 109.47153 * 299.99998 * 13 12 10 23 23 H 1.08998 * 109.47533 * 59.99628 * 13 12 10 24 24 H 1.08006 * 126.66195 * 0.03258 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7084 1.3464 -0.0006 5 1 1.8896 2.3965 -1.2125 6 1 1.8897 2.3964 1.2126 7 6 2.0081 -1.2016 -0.0005 8 1 3.0881 -1.2017 -0.0010 9 8 1.3335 -2.3701 -0.0016 10 6 2.0651 -3.4965 -0.0015 11 8 3.2755 -3.4331 -0.0010 12 6 1.3809 -4.8393 -0.0021 13 6 2.4345 -5.9486 -0.0025 14 7 1.7695 -7.2539 -0.0024 15 6 1.9597 -8.2481 -0.8896 16 7 1.1730 -9.2317 -0.5268 17 7 0.5334 -8.8611 0.5285 18 7 0.8958 -7.6687 0.8515 19 1 -0.4850 0.8400 -0.0004 20 1 0.7578 -4.9299 0.8877 21 1 0.7584 -4.9296 -0.8923 22 1 3.0573 -5.8578 -0.8925 23 1 3.0574 -5.8585 0.8874 24 1 2.6305 -8.2375 -1.7360 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350908391.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:51 Heat of formation + Delta-G solvation = 36.216492 kcal Electronic energy + Delta-G solvation = -13271.701483 eV Core-core repulsion = 10609.752490 eV Total energy + Delta-G solvation = -2661.948993 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.070 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.17293 -39.28718 -36.39322 -35.20513 -32.51291 -32.31392 -31.34238 -26.52150 -24.94501 -23.81854 -22.52981 -20.09003 -18.08144 -17.79899 -17.02427 -16.41260 -15.75300 -15.55471 -14.63183 -14.45933 -13.96433 -13.31434 -12.77854 -12.38788 -12.13115 -11.70985 -11.59665 -11.24434 -11.19046 -10.84310 -10.58191 -10.49673 -10.35691 -9.97070 -9.32315 -8.72787 -6.55309 -4.24494 1.23865 1.93286 2.22820 2.97099 3.11215 3.18515 3.30390 3.76998 4.14770 4.20198 4.40868 4.67675 4.83095 4.99782 5.18613 5.34781 5.55813 5.74312 5.84555 6.11063 6.48114 7.25015 7.78157 8.48279 8.58254 8.92659 9.63654 10.61995 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.091473 B = 0.005678 C = 0.005461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 306.029000 B = 4930.273422 C = 5125.577787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.043 3.957 3 Si 0.945 3.055 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.386 4.386 8 H 0.099 0.901 9 O -0.206 6.206 10 C 0.400 3.600 11 O -0.560 6.560 12 C -0.118 4.118 13 C 0.130 3.870 14 N -0.303 5.303 15 C 0.159 3.841 16 N -0.314 5.314 17 N -0.083 5.083 18 N -0.088 5.088 19 H 0.271 0.729 20 H 0.110 0.890 21 H 0.100 0.900 22 H 0.124 0.876 23 H 0.116 0.884 24 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.256 -8.651 -2.417 9.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.162 4.162 3 Si 0.770 3.230 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.461 4.461 8 H 0.117 0.883 9 O -0.112 6.112 10 C 0.246 3.754 11 O -0.459 6.459 12 C -0.157 4.157 13 C 0.009 3.991 14 N -0.105 5.105 15 C -0.140 4.140 16 N -0.162 5.162 17 N -0.077 5.077 18 N -0.075 5.075 19 H 0.081 0.919 20 H 0.128 0.872 21 H 0.119 0.881 22 H 0.142 0.858 23 H 0.134 0.866 24 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 3.404 -9.076 -1.591 9.823 hybrid contribution 1.090 1.399 -0.613 1.877 sum 4.494 -7.677 -2.204 9.165 Atomic orbital electron populations 1.69998 1.06102 1.27944 1.45570 1.25399 0.95852 0.99057 0.95865 0.85578 0.79427 0.79765 0.78266 1.18849 1.20059 1.20027 1.21317 0.92474 0.79516 1.52840 0.88332 1.83857 1.39360 1.13383 1.74640 1.22509 0.86389 0.86853 0.79644 1.90583 1.15372 1.88098 1.51876 1.21240 0.98177 0.89698 1.06616 1.22092 0.94287 0.75007 1.07690 1.48886 1.27922 1.15729 1.17972 1.27745 1.02453 0.84791 0.98976 1.74969 1.08066 1.24397 1.08793 1.78626 1.18324 1.03138 1.07604 1.78913 1.04925 1.08922 1.14751 0.91862 0.87173 0.88145 0.85819 0.86570 0.74923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.38 13.67 55.48 0.76 -23.62 14 2 C 0.04 1.17 5.49 -17.53 -0.10 1.07 14 3 Si 0.95 20.33 29.55 -169.99 -5.02 15.31 14 4 H -0.26 -5.57 7.11 56.52 0.40 -5.17 14 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 14 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 14 7 C -0.39 -10.80 9.65 30.92 0.30 -10.51 14 8 H 0.10 2.76 6.86 -52.49 -0.36 2.40 14 9 O -0.21 -5.54 9.75 -20.70 -0.20 -5.74 14 10 C 0.40 8.69 7.91 36.01 0.28 8.98 14 11 O -0.56 -13.05 15.22 -19.05 -0.29 -13.34 14 12 C -0.12 -1.82 5.96 -27.88 -0.17 -1.98 14 13 C 0.13 1.53 5.77 -4.04 -0.02 1.50 14 14 N -0.30 -3.72 3.44 -62.55 -0.22 -3.93 14 15 C 0.16 1.66 12.79 -90.39 -1.16 0.51 14 16 N -0.31 -4.41 12.36 29.59 0.37 -4.05 14 17 N -0.08 -1.33 13.43 60.35 0.81 -0.52 14 18 N -0.09 -1.35 13.08 60.35 0.79 -0.56 14 19 H 0.27 7.02 8.31 -40.82 -0.34 6.69 14 20 H 0.11 1.69 8.14 -51.93 -0.42 1.27 14 21 H 0.10 1.43 8.14 -51.93 -0.42 1.00 14 22 H 0.12 1.17 8.04 -51.93 -0.42 0.75 14 23 H 0.12 1.37 8.10 -51.93 -0.42 0.95 14 24 H 0.23 1.15 8.06 -52.48 -0.42 0.73 14 LS Contribution 235.01 15.07 3.54 3.54 Total: -1.00 -33.48 235.01 -1.92 -35.41 By element: Atomic # 1 Polarization: -0.47 SS G_CDS: -1.60 Total: -2.07 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -0.86 Total: -0.43 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 2.51 Total: -32.68 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.49 Total: -19.08 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -33.48 -1.92 -35.41 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350908391.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.622 kcal (2) G-P(sol) polarization free energy of solvation -33.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds