Wall clock time and date at job start Sun Mar 29 2020 21:49:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31438 * 1
3 3 Si 1.86805 * 120.00101 * 2 1
4 4 H 1.48498 * 109.47174 * 180.02562 * 3 2 1
5 5 H 1.48506 * 109.47031 * 300.00437 * 3 2 1
6 6 H 1.48505 * 109.46858 * 60.00220 * 3 2 1
7 7 C 1.38752 * 119.99951 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00052 * 179.97438 * 7 2 1
9 9 O 1.34922 * 120.00163 * 0.02562 * 7 2 1
10 10 C 1.34308 * 117.00061 * 180.02562 * 9 7 2
11 11 O 1.21208 * 120.00236 * 359.97438 * 10 9 7
12 12 C 1.50701 * 119.99862 * 179.97438 * 10 9 7
13 13 C 1.52997 * 109.47212 * 179.97438 * 12 10 9
14 14 N 1.46500 * 109.47473 * 179.97438 * 13 12 10
15 15 C 1.34597 * 126.43783 * 125.00017 * 14 13 12
16 16 N 1.31072 * 106.67933 * 180.02562 * 15 14 13
17 17 N 1.28839 * 107.98903 * 359.97438 * 16 15 14
18 18 N 1.28743 * 109.40039 * 359.73711 * 17 16 15
19 19 H 0.97000 * 119.99981 * 0.02562 * 1 2 3
20 20 H 1.09002 * 109.47060 * 299.99738 * 12 10 9
21 21 H 1.09001 * 109.47380 * 59.99825 * 12 10 9
22 22 H 1.09002 * 109.47153 * 299.99998 * 13 12 10
23 23 H 1.08998 * 109.47533 * 59.99628 * 13 12 10
24 24 H 1.08006 * 126.66195 * 0.03258 * 15 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3144 0.0000 0.0000
3 14 2.2484 1.6178 0.0000
4 1 3.7084 1.3464 -0.0006
5 1 1.8896 2.3965 -1.2125
6 1 1.8897 2.3964 1.2126
7 6 2.0081 -1.2016 -0.0005
8 1 3.0881 -1.2017 -0.0010
9 8 1.3335 -2.3701 -0.0016
10 6 2.0651 -3.4965 -0.0015
11 8 3.2755 -3.4331 -0.0010
12 6 1.3809 -4.8393 -0.0021
13 6 2.4345 -5.9486 -0.0025
14 7 1.7695 -7.2539 -0.0024
15 6 1.9597 -8.2481 -0.8896
16 7 1.1730 -9.2317 -0.5268
17 7 0.5334 -8.8611 0.5285
18 7 0.8958 -7.6687 0.8515
19 1 -0.4850 0.8400 -0.0004
20 1 0.7578 -4.9299 0.8877
21 1 0.7584 -4.9296 -0.8923
22 1 3.0573 -5.8578 -0.8925
23 1 3.0574 -5.8585 0.8874
24 1 2.6305 -8.2375 -1.7360
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001350908391.mol2 24
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:49:51
Heat of formation + Delta-G solvation = 36.216492 kcal
Electronic energy + Delta-G solvation = -13271.701483 eV
Core-core repulsion = 10609.752490 eV
Total energy + Delta-G solvation = -2661.948993 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 212.070 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-44.17293 -39.28718 -36.39322 -35.20513 -32.51291 -32.31392 -31.34238 -26.52150
-24.94501 -23.81854 -22.52981 -20.09003 -18.08144 -17.79899 -17.02427 -16.41260
-15.75300 -15.55471 -14.63183 -14.45933 -13.96433 -13.31434 -12.77854 -12.38788
-12.13115 -11.70985 -11.59665 -11.24434 -11.19046 -10.84310 -10.58191 -10.49673
-10.35691 -9.97070 -9.32315 -8.72787 -6.55309 -4.24494 1.23865 1.93286
2.22820 2.97099 3.11215 3.18515 3.30390 3.76998 4.14770 4.20198
4.40868 4.67675 4.83095 4.99782 5.18613 5.34781 5.55813 5.74312
5.84555 6.11063 6.48114 7.25015 7.78157 8.48279 8.58254 8.92659
9.63654 10.61995
Molecular weight = 212.07amu
Principal moments of inertia in cm(-1)
A = 0.091473 B = 0.005678 C = 0.005461
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 306.029000 B = 4930.273422 C = 5125.577787
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.860 5.860
2 C 0.043 3.957
3 Si 0.945 3.055
4 H -0.264 1.264
5 H -0.275 1.275
6 H -0.275 1.275
7 C -0.386 4.386
8 H 0.099 0.901
9 O -0.206 6.206
10 C 0.400 3.600
11 O -0.560 6.560
12 C -0.118 4.118
13 C 0.130 3.870
14 N -0.303 5.303
15 C 0.159 3.841
16 N -0.314 5.314
17 N -0.083 5.083
18 N -0.088 5.088
19 H 0.271 0.729
20 H 0.110 0.890
21 H 0.100 0.900
22 H 0.124 0.876
23 H 0.116 0.884
24 H 0.235 0.765
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.256 -8.651 -2.417 9.939
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.496 5.496
2 C -0.162 4.162
3 Si 0.770 3.230
4 H -0.188 1.188
5 H -0.201 1.201
6 H -0.200 1.200
7 C -0.461 4.461
8 H 0.117 0.883
9 O -0.112 6.112
10 C 0.246 3.754
11 O -0.459 6.459
12 C -0.157 4.157
13 C 0.009 3.991
14 N -0.105 5.105
15 C -0.140 4.140
16 N -0.162 5.162
17 N -0.077 5.077
18 N -0.075 5.075
19 H 0.081 0.919
20 H 0.128 0.872
21 H 0.119 0.881
22 H 0.142 0.858
23 H 0.134 0.866
24 H 0.251 0.749
Dipole moment (debyes) X Y Z Total
from point charges 3.404 -9.076 -1.591 9.823
hybrid contribution 1.090 1.399 -0.613 1.877
sum 4.494 -7.677 -2.204 9.165
Atomic orbital electron populations
1.69998 1.06102 1.27944 1.45570 1.25399 0.95852 0.99057 0.95865
0.85578 0.79427 0.79765 0.78266 1.18849 1.20059 1.20027 1.21317
0.92474 0.79516 1.52840 0.88332 1.83857 1.39360 1.13383 1.74640
1.22509 0.86389 0.86853 0.79644 1.90583 1.15372 1.88098 1.51876
1.21240 0.98177 0.89698 1.06616 1.22092 0.94287 0.75007 1.07690
1.48886 1.27922 1.15729 1.17972 1.27745 1.02453 0.84791 0.98976
1.74969 1.08066 1.24397 1.08793 1.78626 1.18324 1.03138 1.07604
1.78913 1.04925 1.08922 1.14751 0.91862 0.87173 0.88145 0.85819
0.86570 0.74923
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -24.38 13.67 55.48 0.76 -23.62 14
2 C 0.04 1.17 5.49 -17.53 -0.10 1.07 14
3 Si 0.95 20.33 29.55 -169.99 -5.02 15.31 14
4 H -0.26 -5.57 7.11 56.52 0.40 -5.17 14
5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 14
6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 14
7 C -0.39 -10.80 9.65 30.92 0.30 -10.51 14
8 H 0.10 2.76 6.86 -52.49 -0.36 2.40 14
9 O -0.21 -5.54 9.75 -20.70 -0.20 -5.74 14
10 C 0.40 8.69 7.91 36.01 0.28 8.98 14
11 O -0.56 -13.05 15.22 -19.05 -0.29 -13.34 14
12 C -0.12 -1.82 5.96 -27.88 -0.17 -1.98 14
13 C 0.13 1.53 5.77 -4.04 -0.02 1.50 14
14 N -0.30 -3.72 3.44 -62.55 -0.22 -3.93 14
15 C 0.16 1.66 12.79 -90.39 -1.16 0.51 14
16 N -0.31 -4.41 12.36 29.59 0.37 -4.05 14
17 N -0.08 -1.33 13.43 60.35 0.81 -0.52 14
18 N -0.09 -1.35 13.08 60.35 0.79 -0.56 14
19 H 0.27 7.02 8.31 -40.82 -0.34 6.69 14
20 H 0.11 1.69 8.14 -51.93 -0.42 1.27 14
21 H 0.10 1.43 8.14 -51.93 -0.42 1.00 14
22 H 0.12 1.17 8.04 -51.93 -0.42 0.75 14
23 H 0.12 1.37 8.10 -51.93 -0.42 0.95 14
24 H 0.23 1.15 8.06 -52.48 -0.42 0.73 14
LS Contribution 235.01 15.07 3.54 3.54
Total: -1.00 -33.48 235.01 -1.92 -35.41
By element:
Atomic # 1 Polarization: -0.47 SS G_CDS: -1.60 Total: -2.07 kcal
Atomic # 6 Polarization: 0.43 SS G_CDS: -0.86 Total: -0.43 kcal
Atomic # 7 Polarization: -35.19 SS G_CDS: 2.51 Total: -32.68 kcal
Atomic # 8 Polarization: -18.59 SS G_CDS: -0.49 Total: -19.08 kcal
Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal
Total LS contribution 3.54 Total: 3.54 kcal
Total: -33.48 -1.92 -35.41 kcal
The number of atoms in the molecule is 24
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001350908391.mol2 24
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.622 kcal
(2) G-P(sol) polarization free energy of solvation -33.482 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.140 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.924 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.405 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.216 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds