Wall clock time and date at job start Sun Mar 29 2020 21:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31438 * 1 3 3 Si 1.86805 * 120.00101 * 2 1 4 4 H 1.48498 * 109.47174 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47031 * 300.00437 * 3 2 1 6 6 H 1.48505 * 109.46858 * 60.00220 * 3 2 1 7 7 C 1.38752 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00052 * 179.97438 * 7 2 1 9 9 O 1.34922 * 120.00163 * 0.02562 * 7 2 1 10 10 C 1.34308 * 117.00061 * 180.02562 * 9 7 2 11 11 O 1.21208 * 120.00236 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99862 * 179.97438 * 10 9 7 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 10 9 14 14 N 1.46500 * 109.47473 * 179.97438 * 13 12 10 15 15 C 1.34597 * 126.43783 * 125.00017 * 14 13 12 16 16 N 1.31072 * 106.67933 * 180.02562 * 15 14 13 17 17 N 1.28839 * 107.98903 * 359.97438 * 16 15 14 18 18 N 1.28743 * 109.40039 * 359.73711 * 17 16 15 19 19 H 0.97000 * 119.99981 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99738 * 12 10 9 21 21 H 1.09001 * 109.47380 * 59.99825 * 12 10 9 22 22 H 1.09002 * 109.47153 * 299.99998 * 13 12 10 23 23 H 1.08998 * 109.47533 * 59.99628 * 13 12 10 24 24 H 1.08006 * 126.66195 * 0.03258 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7084 1.3464 -0.0006 5 1 1.8896 2.3965 -1.2125 6 1 1.8897 2.3964 1.2126 7 6 2.0081 -1.2016 -0.0005 8 1 3.0881 -1.2017 -0.0010 9 8 1.3335 -2.3701 -0.0016 10 6 2.0651 -3.4965 -0.0015 11 8 3.2755 -3.4331 -0.0010 12 6 1.3809 -4.8393 -0.0021 13 6 2.4345 -5.9486 -0.0025 14 7 1.7695 -7.2539 -0.0024 15 6 1.9597 -8.2481 -0.8896 16 7 1.1730 -9.2317 -0.5268 17 7 0.5334 -8.8611 0.5285 18 7 0.8958 -7.6687 0.8515 19 1 -0.4850 0.8400 -0.0004 20 1 0.7578 -4.9299 0.8877 21 1 0.7584 -4.9296 -0.8923 22 1 3.0573 -5.8578 -0.8925 23 1 3.0574 -5.8585 0.8874 24 1 2.6305 -8.2375 -1.7360 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350908391.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:51 Heat of formation + Delta-G solvation = 12.827105 kcal Electronic energy + Delta-G solvation = -13272.715723 eV Core-core repulsion = 10609.752490 eV Total energy + Delta-G solvation = -2662.963233 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.070 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.18348 -41.11729 -37.82077 -36.76157 -34.33271 -33.54770 -32.57714 -28.09965 -26.55571 -24.80283 -23.70070 -21.70952 -19.94084 -19.15975 -18.06202 -17.92832 -17.10350 -16.80200 -16.35720 -16.20037 -15.31211 -14.66403 -14.10974 -13.76519 -13.61796 -13.27034 -13.08341 -12.60736 -12.36766 -12.21130 -12.16147 -11.99315 -11.87591 -11.37566 -11.14450 -10.72327 -8.56024 -6.36235 0.27075 0.95477 1.22588 1.26964 1.37022 1.55082 1.59814 2.11215 2.70734 2.96379 3.24497 3.50460 3.56386 3.85758 4.18094 4.32615 4.45910 4.63593 4.64933 4.80221 5.16144 5.23395 5.80234 6.59979 6.89737 7.55813 7.70509 8.64679 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.091473 B = 0.005678 C = 0.005461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 306.029000 B = 4930.273422 C = 5125.577787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.006 4.006 3 Si 1.018 2.982 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.264 1.264 7 C -0.418 4.418 8 H 0.090 0.910 9 O -0.245 6.245 10 C 0.407 3.593 11 O -0.573 6.573 12 C -0.107 4.107 13 C 0.140 3.860 14 N -0.304 5.304 15 C 0.186 3.814 16 N -0.342 5.342 17 N -0.109 5.109 18 N -0.115 5.115 19 H 0.278 0.722 20 H 0.110 0.890 21 H 0.117 0.883 22 H 0.157 0.843 23 H 0.117 0.883 24 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.540 -8.735 -3.322 10.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.206 4.206 3 Si 0.837 3.163 4 H -0.184 1.184 5 H -0.187 1.187 6 H -0.189 1.189 7 C -0.493 4.493 8 H 0.107 0.893 9 O -0.153 6.153 10 C 0.254 3.746 11 O -0.471 6.471 12 C -0.146 4.146 13 C 0.020 3.980 14 N -0.105 5.105 15 C -0.112 4.112 16 N -0.191 5.191 17 N -0.104 5.104 18 N -0.102 5.102 19 H 0.088 0.912 20 H 0.128 0.872 21 H 0.135 0.865 22 H 0.174 0.826 23 H 0.135 0.865 24 H 0.305 0.695 Dipole moment (debyes) X Y Z Total from point charges 4.695 -9.195 -2.493 10.621 hybrid contribution 0.750 1.275 -0.366 1.524 sum 5.446 -7.920 -2.859 10.028 Atomic orbital electron populations 1.70086 1.07804 1.29391 1.46893 1.26570 0.96817 1.02567 0.94673 0.84546 0.77999 0.74707 0.79020 1.18369 1.18671 1.18868 1.21504 0.92328 0.80809 1.54686 0.89274 1.83884 1.40600 1.14405 1.76434 1.23651 0.86434 0.87713 0.76791 1.90560 1.16344 1.88580 1.51646 1.21246 0.98967 0.86974 1.07379 1.22085 0.92899 0.73554 1.09476 1.48863 1.27653 1.16028 1.18006 1.28757 1.00967 0.82802 0.98642 1.74921 1.09300 1.25977 1.08874 1.78614 1.19381 1.03644 1.08729 1.78881 1.06220 1.09044 1.16050 0.91228 0.87223 0.86490 0.82558 0.86479 0.69468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.97 13.67 21.62 0.30 -51.67 14 2 C -0.01 -0.32 5.49 84.87 0.47 0.14 14 3 Si 1.02 41.37 29.55 68.60 2.03 43.40 14 4 H -0.26 -10.21 7.11 99.48 0.71 -9.51 14 5 H -0.26 -10.01 7.11 99.48 0.71 -9.31 14 6 H -0.26 -10.17 7.11 99.48 0.71 -9.47 14 7 C -0.42 -23.78 9.65 67.94 0.66 -23.12 14 8 H 0.09 5.07 6.86 -2.91 -0.02 5.05 14 9 O -0.25 -13.38 9.75 14.88 0.14 -13.24 14 10 C 0.41 17.47 7.91 71.24 0.56 18.03 14 11 O -0.57 -26.16 15.22 20.78 0.32 -25.85 14 12 C -0.11 -3.10 5.96 29.85 0.18 -2.92 14 13 C 0.14 2.88 5.77 86.38 0.50 3.37 14 14 N -0.30 -6.62 3.44 -351.82 -1.21 -7.83 14 15 C 0.19 3.22 12.79 180.27 2.31 5.52 14 16 N -0.34 -8.97 12.36 -60.29 -0.74 -9.71 14 17 N -0.11 -3.42 13.43 37.01 0.50 -2.92 14 18 N -0.11 -3.36 13.08 37.02 0.48 -2.87 14 19 H 0.28 14.52 8.31 -92.71 -0.77 13.75 14 20 H 0.11 3.27 8.14 -2.39 -0.02 3.25 14 21 H 0.12 3.06 8.14 -2.39 -0.02 3.04 14 22 H 0.16 2.25 8.04 -2.39 -0.02 2.23 14 23 H 0.12 2.46 8.10 -2.39 -0.02 2.44 14 24 H 0.29 1.18 8.06 -2.91 -0.02 1.16 14 Total: -1.00 -74.73 235.01 7.71 -67.03 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: 1.23 Total: 2.64 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 4.67 Total: 1.03 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -0.68 Total: -75.01 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: 0.46 Total: -39.08 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -74.73 7.71 -67.03 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350908391.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.854 kcal (2) G-P(sol) polarization free energy of solvation -74.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds