Wall clock time and date at job start Sun Mar 29 2020 21:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 119.99728 * 2 1 4 4 H 1.48501 * 109.47104 * 239.99312 * 3 2 1 5 5 H 1.48499 * 109.47309 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47139 * 119.99652 * 3 2 1 7 7 C 1.37878 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99564 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00048 * 0.02562 * 7 2 1 10 10 S 1.81395 * 109.46829 * 179.97438 * 9 7 2 11 11 C 1.81399 * 102.99781 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47162 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.47035 * 179.97438 * 12 11 10 14 14 C 1.34944 * 126.03372 * 125.00124 * 13 12 11 15 15 C 1.35317 * 107.74658 * 179.97438 * 14 13 12 16 16 C 1.39871 * 107.91935 * 0.02562 * 15 14 13 17 17 N 1.30845 * 108.20108 * 359.74200 * 16 15 14 18 18 H 0.97002 * 120.00083 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.46894 * 59.99920 * 9 7 2 20 20 H 1.09004 * 109.46887 * 299.99959 * 9 7 2 21 21 H 1.09004 * 109.47089 * 60.00064 * 11 10 9 22 22 H 1.09004 * 109.47568 * 300.00054 * 11 10 9 23 23 H 1.09004 * 109.46930 * 60.00133 * 12 11 10 24 24 H 1.09000 * 109.47312 * 300.00077 * 12 11 10 25 25 H 1.08001 * 126.12891 * 0.02562 * 14 13 12 26 26 H 1.08002 * 126.04160 * 179.97438 * 15 14 13 27 27 H 1.07995 * 125.90070 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 16 2.4299 -3.8779 0.0005 11 6 1.3516 -5.3366 0.0013 12 6 2.2085 -6.6042 0.0008 13 7 1.3376 -7.7824 0.0020 14 6 1.3681 -8.7930 -0.8916 15 6 0.4093 -9.6816 -0.5422 16 6 -0.2295 -9.1971 0.6039 17 7 0.3297 -8.0611 0.9340 18 1 -0.4850 0.8401 -0.0004 19 1 0.6248 -2.5571 -0.8897 20 1 0.6241 -2.5567 0.8903 21 1 0.7221 -5.3237 -0.8885 22 1 0.7227 -5.3232 0.8915 23 1 2.8383 -6.6174 0.8904 24 1 2.8370 -6.6175 -0.8896 25 1 2.0383 -8.8780 -1.7343 26 1 0.1775 -10.6019 -1.0578 27 1 -1.0412 -9.6793 1.1282 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473042068.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:02 Heat of formation + Delta-G solvation = 65.898691 kcal Electronic energy + Delta-G solvation = -11125.004621 eV Core-core repulsion = 9010.635959 eV Total energy + Delta-G solvation = -2114.368662 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.06238 -34.34164 -33.18279 -30.34419 -29.17607 -28.56901 -24.11326 -22.84005 -21.06984 -20.47095 -17.26921 -16.55856 -15.64010 -15.16233 -14.56923 -14.44473 -13.99448 -13.48485 -12.81585 -12.58374 -12.41144 -12.31945 -12.12786 -11.39783 -10.87010 -10.75848 -10.58871 -10.06667 -9.67291 -9.40222 -8.98962 -8.64263 -8.59142 -6.80736 -6.22316 -4.27447 1.89899 2.17592 2.86145 2.94131 3.26340 3.29670 3.33605 3.74378 4.32789 4.55181 4.82877 4.97921 5.08078 5.14641 5.34586 5.51095 5.70715 5.83895 5.98534 6.09741 6.65569 7.01929 7.04191 7.07082 7.71193 7.73875 7.96043 8.73950 9.35809 10.88919 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.087819 B = 0.005149 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 318.760708 B = 5436.180315 C = 5627.399441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.066 3.934 3 Si 0.909 3.091 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.068 0.932 9 C 0.096 3.904 10 S -0.298 6.298 11 C -0.105 4.105 12 C 0.153 3.847 13 N -0.366 5.366 14 C 0.053 3.947 15 C -0.281 4.281 16 C 0.038 3.962 17 N -0.292 5.292 18 H 0.267 0.733 19 H 0.036 0.964 20 H 0.038 0.962 21 H 0.076 0.924 22 H 0.087 0.913 23 H 0.093 0.907 24 H 0.103 0.897 25 H 0.173 0.827 26 H 0.145 0.855 27 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.900 -15.368 -1.850 15.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.735 3.265 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.086 0.914 9 C -0.050 4.050 10 S -0.072 6.072 11 C -0.254 4.254 12 C 0.032 3.968 13 N -0.148 5.148 14 C -0.094 4.094 15 C -0.311 4.311 16 C -0.148 4.148 17 N -0.114 5.114 18 H 0.076 0.924 19 H 0.055 0.945 20 H 0.056 0.944 21 H 0.095 0.905 22 H 0.106 0.894 23 H 0.111 0.889 24 H 0.121 0.879 25 H 0.190 0.810 26 H 0.162 0.838 27 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 2.941 -14.119 -1.023 14.458 hybrid contribution -1.040 0.137 -0.662 1.241 sum 1.901 -13.982 -1.685 14.211 Atomic orbital electron populations 1.69951 1.06172 1.27557 1.49339 1.24976 0.94992 0.99325 0.94566 0.86379 0.79374 0.81731 0.78974 1.19880 1.21018 1.19854 1.20625 0.93452 0.88645 1.52728 0.91428 1.21063 0.93394 0.90307 1.00283 1.86483 1.20785 1.01822 1.98133 1.23441 1.01113 0.95228 1.05587 1.21509 0.90193 0.80420 1.04725 1.48932 1.27760 1.17550 1.20603 1.22614 1.00867 0.89650 0.96227 1.21481 1.02927 1.04108 1.02589 1.23889 1.00290 0.93663 0.96985 1.77406 1.02837 1.17566 1.13544 0.92357 0.94525 0.94412 0.90535 0.89433 0.88909 0.87875 0.81016 0.83753 0.80244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.37 15 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 15 3 Si 0.91 21.34 29.54 -169.99 -5.02 16.31 15 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 7 C -0.52 -14.53 9.13 -34.44 -0.31 -14.84 15 8 H 0.07 1.89 7.71 -52.49 -0.40 1.48 15 9 C 0.10 2.52 5.70 36.01 0.21 2.73 15 10 S -0.30 -6.33 21.66 -107.50 -2.33 -8.66 15 11 C -0.10 -1.82 6.13 37.16 0.23 -1.59 15 12 C 0.15 2.12 6.52 -4.04 -0.03 2.10 15 13 N -0.37 -5.16 3.68 -61.36 -0.23 -5.38 15 14 C 0.05 0.61 11.45 -17.22 -0.20 0.41 15 15 C -0.28 -3.10 10.80 -40.01 -0.43 -3.53 15 16 C 0.04 0.47 12.03 -17.36 -0.21 0.26 15 17 N -0.29 -4.55 12.42 30.63 0.38 -4.17 15 18 H 0.27 7.33 8.31 -40.82 -0.34 6.99 15 19 H 0.04 1.00 8.14 -51.92 -0.42 0.57 15 20 H 0.04 1.04 8.14 -51.92 -0.42 0.61 15 21 H 0.08 1.35 8.14 -51.92 -0.42 0.93 15 22 H 0.09 1.64 8.14 -51.92 -0.42 1.22 15 23 H 0.09 1.27 8.14 -51.93 -0.42 0.84 15 24 H 0.10 1.19 8.07 -51.93 -0.42 0.77 15 25 H 0.17 1.34 8.06 -52.49 -0.42 0.91 15 26 H 0.14 1.20 8.06 -52.49 -0.42 0.77 15 27 H 0.18 1.63 8.06 -52.49 -0.42 1.21 15 LS Contribution 258.09 15.07 3.89 3.89 Total: -1.00 -31.00 258.09 -6.75 -37.75 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -3.34 Total: -1.65 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -0.84 Total: -12.73 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.89 Total: -34.91 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -6.33 SS G_CDS: -2.33 Total: -8.66 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.00 -6.75 -37.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473042068.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.653 kcal (2) G-P(sol) polarization free energy of solvation -31.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds