Wall clock time and date at job start Sun Mar 29 2020 21:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99710 * 2 1 4 4 H 1.48510 * 109.46942 * 239.99598 * 3 2 1 5 5 H 1.48492 * 109.47564 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47274 * 120.00181 * 3 2 1 7 7 C 1.37874 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00195 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99905 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47045 * 180.02562 * 9 7 2 11 11 C 1.39009 * 119.99809 * 179.97438 * 10 9 7 12 12 C 1.39079 * 119.69893 * 359.97438 * 11 10 9 13 13 C 1.38451 * 119.07719 * 180.28122 * 12 11 10 14 14 Cl 1.73595 * 120.75655 * 179.70058 * 13 12 11 15 15 C 1.39027 * 118.47767 * 359.45504 * 13 12 11 16 16 C 1.37969 * 119.31457 * 0.52492 * 15 13 12 17 17 N 1.31995 * 120.86811 * 359.74340 * 16 15 13 18 18 H 0.96998 * 119.99953 * 0.02562 * 1 2 3 19 19 H 1.08994 * 109.47416 * 59.99562 * 9 7 2 20 20 H 1.09001 * 109.46824 * 299.99738 * 9 7 2 21 21 H 0.97003 * 120.00067 * 359.97438 * 10 9 7 22 22 H 1.08002 * 120.45783 * 359.97438 * 12 11 10 23 23 H 1.07997 * 120.34281 * 180.28899 * 15 13 12 24 24 H 1.07997 * 119.56825 * 179.76696 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0018 11 6 1.7397 -4.9232 0.0025 12 6 0.3710 -5.1702 0.0027 13 6 -0.0763 -6.4804 0.0094 14 17 -1.7749 -6.8385 0.0176 15 6 0.8660 -7.5026 0.0041 16 6 2.2084 -7.1839 0.0035 17 7 2.6056 -5.9252 0.0027 18 1 -0.4850 0.8400 -0.0004 19 1 0.6247 -2.5571 -0.8896 20 1 0.6241 -2.5567 0.8903 21 1 3.1568 -3.4354 0.0021 22 1 -0.3330 -4.3512 0.0026 23 1 0.5505 -8.5355 0.0044 24 1 2.9439 -7.9747 0.0032 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515700938.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:06 Heat of formation + Delta-G solvation = 4.809444 kcal Electronic energy + Delta-G solvation = -11271.939508 eV Core-core repulsion = 9017.045016 eV Total energy + Delta-G solvation = -2254.894491 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.041 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.11501 -37.78080 -36.94574 -34.66532 -33.02109 -31.12417 -28.57864 -25.34496 -24.11360 -22.95421 -19.42386 -18.14337 -17.68772 -16.79562 -16.44355 -15.73404 -15.50867 -15.10258 -14.55467 -14.38479 -14.06272 -13.22822 -13.19111 -12.84342 -12.74333 -12.21163 -11.98069 -11.52287 -11.23445 -10.62460 -10.52758 -10.42643 -8.60741 -8.32840 -6.47195 0.17131 0.40890 0.96833 1.42064 1.44701 1.52997 2.27830 2.51574 2.87952 3.03071 3.74424 4.07894 4.10277 4.35044 4.64271 4.82314 4.94756 5.14270 5.20777 5.45007 5.63897 5.83058 6.07660 6.60624 6.87705 7.17825 7.30530 8.78407 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.046023 B = 0.007052 C = 0.006135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.251364 B = 3969.419156 C = 4562.521705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.012 3.988 3 Si 0.979 3.021 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.561 4.561 8 H 0.072 0.928 9 C 0.274 3.726 10 N -0.706 5.706 11 C 0.401 3.599 12 C -0.260 4.260 13 C 0.049 3.951 14 Cl -0.055 7.055 15 C -0.235 4.235 16 C 0.165 3.835 17 N -0.568 5.568 18 H 0.270 0.730 19 H 0.000 1.000 20 H 0.000 1.000 21 H 0.402 0.598 22 H 0.121 0.879 23 H 0.172 0.828 24 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.016 -12.882 0.018 12.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.802 3.198 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.599 4.599 8 H 0.090 0.910 9 C 0.151 3.849 10 N -0.334 5.334 11 C 0.164 3.836 12 C -0.287 4.287 13 C 0.014 3.986 14 Cl -0.026 7.026 15 C -0.258 4.258 16 C 0.006 3.994 17 N -0.288 5.288 18 H 0.079 0.921 19 H 0.018 0.982 20 H 0.018 0.982 21 H 0.237 0.763 22 H 0.139 0.861 23 H 0.190 0.810 24 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 1.419 -12.381 0.019 12.462 hybrid contribution -0.742 0.971 0.001 1.222 sum 0.678 -11.411 0.020 11.431 Atomic orbital electron populations 1.70058 1.07752 1.28713 1.49640 1.25891 0.95831 1.03326 0.93776 0.85295 0.78079 0.77170 0.79245 1.19104 1.20584 1.19095 1.21510 0.94081 0.90990 1.53351 0.90972 1.18723 0.88367 0.83174 0.94648 1.45093 1.10104 1.01421 1.76800 1.18580 0.88599 0.86593 0.89820 1.21271 0.95424 0.97060 1.14907 1.21116 0.86090 0.93710 0.97639 1.98361 1.12978 1.94781 1.96471 1.21990 0.92751 1.00300 1.10806 1.23123 0.94764 0.91927 0.89604 1.67300 1.38422 1.00705 1.22331 0.92071 0.98182 0.98192 0.76250 0.86121 0.81047 0.77920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.34 13.29 21.45 0.28 -53.06 14 2 C 0.01 0.66 5.46 84.65 0.46 1.13 14 3 Si 0.98 42.22 29.54 68.60 2.03 44.25 14 4 H -0.27 -11.07 7.11 99.48 0.71 -10.36 14 5 H -0.28 -11.83 7.11 99.48 0.71 -11.13 14 6 H -0.27 -11.06 7.11 99.48 0.71 -10.36 14 7 C -0.56 -30.51 9.28 25.60 0.24 -30.28 14 8 H 0.07 3.71 7.60 -2.91 -0.02 3.69 14 9 C 0.27 14.26 4.64 85.63 0.40 14.65 14 10 N -0.71 -31.41 5.72 -348.82 -2.00 -33.41 14 11 C 0.40 16.19 7.65 133.04 1.02 17.21 14 12 C -0.26 -10.08 9.15 22.52 0.21 -9.87 14 13 C 0.05 1.54 6.37 22.51 0.14 1.68 14 14 Cl -0.05 -1.52 29.02 -2.72 -0.08 -1.60 14 15 C -0.23 -5.84 9.93 22.40 0.22 -5.62 14 16 C 0.16 4.23 11.17 84.60 0.95 5.18 14 17 N -0.57 -19.81 10.39 -193.32 -2.01 -21.82 14 18 H 0.27 14.66 8.31 -92.71 -0.77 13.88 14 19 H 0.00 0.02 7.93 -2.39 -0.02 0.00 14 20 H 0.00 0.02 7.92 -2.39 -0.02 0.00 14 21 H 0.40 16.96 8.44 -92.71 -0.78 16.18 14 22 H 0.12 5.18 6.71 -2.91 -0.02 5.16 14 23 H 0.17 2.95 8.06 -2.91 -0.02 2.93 14 24 H 0.20 3.22 8.06 -2.91 -0.02 3.20 14 Total: -1.00 -60.67 235.94 2.30 -58.37 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.44 Total: 13.19 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 3.63 Total: -5.92 kcal Atomic # 7 Polarization: -104.57 SS G_CDS: -3.72 Total: -108.29 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.08 Total: -1.60 kcal Total: -60.67 2.30 -58.37 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515700938.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.183 kcal (2) G-P(sol) polarization free energy of solvation -60.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds