Wall clock time and date at job start Sun Mar 29 2020 21:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47083 * 309.18976 * 3 2 1 5 5 C 1.37098 * 120.00496 * 263.95354 * 4 3 2 6 6 H 1.07999 * 120.00661 * 196.14854 * 5 4 3 7 7 C 1.38956 * 119.99715 * 16.14621 * 5 4 3 8 8 N 1.31417 * 119.99844 * 21.79401 * 7 5 4 9 9 Si 1.86798 * 120.00263 * 201.78938 * 7 5 4 10 10 H 1.48500 * 109.47000 * 85.41668 * 9 7 5 11 11 H 1.48496 * 109.47377 * 205.42035 * 9 7 5 12 12 H 1.48504 * 109.46815 * 325.42142 * 9 7 5 13 13 C 1.34783 * 119.99899 * 83.95669 * 4 3 2 14 14 O 1.21292 * 119.99838 * 179.97438 * 13 4 3 15 15 C 1.50692 * 119.99882 * 359.97438 * 13 4 3 16 16 H 1.09008 * 115.55016 * 325.67033 * 15 13 4 17 17 C 1.53004 * 117.52209 * 111.37175 * 15 13 4 18 18 C 1.52999 * 117.50189 * 180.02562 * 15 13 4 19 19 H 1.08995 * 117.50327 * 144.99302 * 18 15 13 20 20 F 1.39902 * 117.49576 * 359.97392 * 18 15 13 21 21 H 1.09002 * 109.46806 * 189.19223 * 3 2 1 22 22 H 1.08996 * 109.47194 * 69.19818 * 3 2 1 23 23 H 0.97000 * 120.00074 * 179.97438 * 8 7 5 24 24 H 1.08999 * 117.49483 * 359.97438 * 17 15 13 25 25 H 1.09000 * 117.49961 * 214.97033 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0967 -0.8719 1.0705 5 6 3.4429 -0.3388 2.2852 6 1 4.0382 -0.9150 2.9780 7 6 3.0279 0.9431 2.6250 8 7 1.9889 1.4782 2.0241 9 14 3.9466 1.9056 3.9361 10 1 5.1008 2.6064 3.3180 11 1 3.0330 2.9024 4.5498 12 1 4.4366 0.9729 4.9826 13 6 3.2061 -2.1989 0.8612 14 8 3.6111 -2.9212 1.7474 15 6 2.8251 -2.7850 -0.4738 16 1 1.9917 -2.2981 -0.9804 17 6 3.9493 -3.3489 -1.3451 18 6 2.9711 -4.2979 -0.6487 19 1 2.2342 -4.8061 -1.2705 20 9 3.4487 -5.0312 0.4428 21 1 2.9709 1.0153 0.1642 22 1 2.9715 -0.3641 -0.9606 23 1 1.6989 2.3729 2.2615 24 1 4.9649 -3.2956 -0.9529 25 1 3.8555 -3.2330 -2.4249 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527586179.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:47 Heat of formation + Delta-G solvation = -14.439494 kcal Electronic energy + Delta-G solvation = -13937.483118 eV Core-core repulsion = 11253.417555 eV Total energy + Delta-G solvation = -2684.065563 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.070 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.01436 -38.97224 -36.06564 -35.17442 -34.23325 -31.80102 -27.52469 -25.63217 -22.98567 -22.08994 -18.90552 -17.92568 -17.29535 -16.24603 -15.46456 -15.23159 -14.39390 -14.13406 -13.77476 -13.61936 -13.01677 -12.68576 -12.43376 -11.96890 -11.83404 -11.61697 -11.29132 -11.18152 -10.59407 -10.43337 -10.38727 -10.04867 -9.66341 -9.26713 -8.59312 -8.06432 -6.52608 -4.00084 3.05429 3.21645 3.25263 3.31949 3.67225 3.91452 4.03038 4.11041 4.46758 4.62386 4.86521 4.98320 5.17957 5.22252 5.33157 5.66958 5.81876 6.05195 6.15723 6.35309 6.51700 7.45921 7.87589 8.27389 8.69384 8.98988 9.18055 9.73822 10.53647 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.035181 B = 0.011233 C = 0.009242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.695288 B = 2492.119470 C = 3028.986306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.245 3.755 3 C 0.221 3.779 4 N -0.440 5.440 5 C -0.312 4.312 6 H 0.110 0.890 7 C 0.031 3.969 8 N -0.878 5.878 9 Si 0.929 3.071 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.480 3.520 14 O -0.557 6.557 15 C -0.195 4.195 16 H 0.122 0.878 17 C -0.172 4.172 18 C 0.044 3.956 19 H 0.131 0.869 20 F -0.166 7.166 21 H 0.130 0.870 22 H 0.085 0.915 23 H 0.274 0.726 24 H 0.108 0.892 25 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.876 -2.614 -8.412 9.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.074 4.074 3 C 0.093 3.907 4 N -0.160 5.160 5 C -0.439 4.439 6 H 0.127 0.873 7 C -0.173 4.173 8 N -0.517 5.517 9 Si 0.756 3.244 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.267 3.733 14 O -0.438 6.438 15 C -0.217 4.217 16 H 0.140 0.860 17 C -0.210 4.210 18 C 0.008 3.992 19 H 0.148 0.852 20 F -0.146 7.146 21 H 0.148 0.852 22 H 0.102 0.898 23 H 0.084 0.916 24 H 0.127 0.873 25 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.324 -2.806 -7.880 8.682 hybrid contribution 0.564 0.791 0.734 1.218 sum 2.889 -2.016 -7.146 7.967 Atomic orbital electron populations 1.80903 1.13617 1.10212 1.10589 1.29415 0.95448 0.91531 0.90972 1.18803 0.81406 0.99742 0.90705 1.43579 1.56457 1.03918 1.12020 1.19758 1.31114 0.98538 0.94505 0.87271 1.25279 0.95146 0.97942 0.98901 1.69889 1.20885 1.17144 1.43770 0.85882 0.79073 0.79133 0.80359 1.20049 1.21096 1.19366 1.19040 0.84279 0.82256 0.87692 1.90613 1.49573 1.58570 1.45078 1.23042 1.02493 0.97069 0.99060 0.85965 1.23616 0.96640 1.01873 0.98854 1.21880 1.00877 0.87399 0.89068 0.85158 1.92873 1.89078 1.77379 1.55286 0.85218 0.89750 0.91590 0.87310 0.87000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.16 18.54 42.15 0.78 -10.37 15 2 C 0.24 5.35 12.89 -20.76 -0.27 5.09 15 3 C 0.22 4.35 4.80 -6.83 -0.03 4.32 15 4 N -0.44 -10.36 2.60 -117.94 -0.31 -10.67 15 5 C -0.31 -8.12 9.35 -14.93 -0.14 -8.26 15 6 H 0.11 3.02 7.37 -52.49 -0.39 2.63 15 7 C 0.03 0.76 4.87 -17.46 -0.09 0.68 15 8 N -0.88 -22.09 9.47 55.50 0.53 -21.57 15 9 Si 0.93 19.67 29.61 -169.99 -5.03 14.64 15 10 H -0.27 -5.62 7.11 56.52 0.40 -5.21 15 11 H -0.29 -6.09 7.11 56.52 0.40 -5.69 15 12 H -0.27 -5.82 7.11 56.52 0.40 -5.41 15 13 C 0.48 11.15 7.35 -10.99 -0.08 11.07 15 14 O -0.56 -15.20 14.78 5.55 0.08 -15.11 15 15 C -0.19 -3.37 4.80 -91.77 -0.44 -3.81 15 16 H 0.12 1.90 6.71 -51.92 -0.35 1.55 15 17 C -0.17 -2.31 10.22 -26.71 -0.27 -2.58 15 18 C 0.04 0.69 7.83 -26.71 -0.21 0.48 15 19 H 0.13 1.50 8.14 -51.93 -0.42 1.08 15 20 F -0.17 -3.33 15.71 2.25 0.04 -3.29 15 21 H 0.13 2.62 6.34 -51.93 -0.33 2.29 15 22 H 0.08 1.26 6.99 -51.93 -0.36 0.90 15 23 H 0.27 6.66 8.31 -40.82 -0.34 6.32 15 24 H 0.11 1.57 8.14 -51.93 -0.42 1.15 15 25 H 0.11 1.06 8.14 -51.93 -0.42 0.63 15 LS Contribution 234.28 15.07 3.53 3.53 Total: -1.00 -31.89 234.28 -3.74 -35.63 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -1.83 Total: 0.23 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -1.53 Total: 6.99 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 1.00 Total: -42.61 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.08 Total: -15.11 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.04 Total: -3.29 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -31.89 -3.74 -35.63 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527586179.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.189 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds