Wall clock time and date at job start Sun Mar 29 2020 21:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47083 * 309.18976 * 3 2 1 5 5 C 1.37098 * 120.00496 * 263.95354 * 4 3 2 6 6 H 1.07999 * 120.00661 * 196.14854 * 5 4 3 7 7 C 1.38956 * 119.99715 * 16.14621 * 5 4 3 8 8 N 1.31417 * 119.99844 * 21.79401 * 7 5 4 9 9 Si 1.86798 * 120.00263 * 201.78938 * 7 5 4 10 10 H 1.48500 * 109.47000 * 85.41668 * 9 7 5 11 11 H 1.48496 * 109.47377 * 205.42035 * 9 7 5 12 12 H 1.48504 * 109.46815 * 325.42142 * 9 7 5 13 13 C 1.34783 * 119.99899 * 83.95669 * 4 3 2 14 14 O 1.21292 * 119.99838 * 179.97438 * 13 4 3 15 15 C 1.50692 * 119.99882 * 359.97438 * 13 4 3 16 16 H 1.09008 * 115.55016 * 325.67033 * 15 13 4 17 17 C 1.53004 * 117.52209 * 111.37175 * 15 13 4 18 18 C 1.52999 * 117.50189 * 180.02562 * 15 13 4 19 19 H 1.08995 * 117.50327 * 144.99302 * 18 15 13 20 20 F 1.39902 * 117.49576 * 359.97392 * 18 15 13 21 21 H 1.09002 * 109.46806 * 189.19223 * 3 2 1 22 22 H 1.08996 * 109.47194 * 69.19818 * 3 2 1 23 23 H 0.97000 * 120.00074 * 179.97438 * 8 7 5 24 24 H 1.08999 * 117.49483 * 359.97438 * 17 15 13 25 25 H 1.09000 * 117.49961 * 214.97033 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0967 -0.8719 1.0705 5 6 3.4429 -0.3388 2.2852 6 1 4.0382 -0.9150 2.9780 7 6 3.0279 0.9431 2.6250 8 7 1.9889 1.4782 2.0241 9 14 3.9466 1.9056 3.9361 10 1 5.1008 2.6064 3.3180 11 1 3.0330 2.9024 4.5498 12 1 4.4366 0.9729 4.9826 13 6 3.2061 -2.1989 0.8612 14 8 3.6111 -2.9212 1.7474 15 6 2.8251 -2.7850 -0.4738 16 1 1.9917 -2.2981 -0.9804 17 6 3.9493 -3.3489 -1.3451 18 6 2.9711 -4.2979 -0.6487 19 1 2.2342 -4.8061 -1.2705 20 9 3.4487 -5.0312 0.4428 21 1 2.9709 1.0153 0.1642 22 1 2.9715 -0.3641 -0.9606 23 1 1.6989 2.3729 2.2615 24 1 4.9649 -3.2956 -0.9529 25 1 3.8555 -3.2330 -2.4249 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001527586179.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:47 Heat of formation + Delta-G solvation = -35.642495 kcal Electronic energy + Delta-G solvation = -13938.402549 eV Core-core repulsion = 11253.417555 eV Total energy + Delta-G solvation = -2684.984994 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.070 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.39082 -40.68419 -37.74822 -36.68000 -36.02328 -33.69615 -29.25143 -27.38380 -24.55246 -23.22057 -20.52297 -19.75720 -18.78212 -17.93502 -17.05616 -16.70380 -16.10938 -15.64385 -15.35718 -15.26987 -14.74547 -14.25241 -13.95854 -13.68135 -13.37988 -13.21755 -12.95154 -12.87210 -12.33446 -12.21334 -12.12153 -11.29244 -11.12666 -10.90105 -10.41947 -9.94899 -8.43363 -5.97848 1.36626 1.47009 1.56858 1.70680 1.98315 2.22312 2.33865 2.68816 2.95445 3.08000 3.30535 3.58001 3.78382 3.87082 4.17007 4.30936 4.60230 4.83712 4.89710 4.94830 5.23994 5.46309 6.00306 6.38771 6.97303 7.10312 7.33247 7.92288 8.60410 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.035181 B = 0.011233 C = 0.009242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.695288 B = 2492.119470 C = 3028.986306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.257 3.743 3 C 0.223 3.777 4 N -0.452 5.452 5 C -0.344 4.344 6 H 0.078 0.922 7 C 0.006 3.994 8 N -0.891 5.891 9 Si 0.988 3.012 10 H -0.257 1.257 11 H -0.283 1.283 12 H -0.281 1.281 13 C 0.467 3.533 14 O -0.612 6.612 15 C -0.218 4.218 16 H 0.145 0.855 17 C -0.132 4.132 18 C 0.029 3.971 19 H 0.178 0.822 20 F -0.200 7.200 21 H 0.126 0.874 22 H 0.141 0.859 23 H 0.276 0.724 24 H 0.094 0.906 25 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.195 -2.208 -10.517 11.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C -0.061 4.061 3 C 0.096 3.904 4 N -0.171 5.171 5 C -0.472 4.472 6 H 0.096 0.904 7 C -0.196 4.196 8 N -0.530 5.530 9 Si 0.812 3.188 10 H -0.181 1.181 11 H -0.209 1.209 12 H -0.207 1.207 13 C 0.258 3.742 14 O -0.498 6.498 15 C -0.239 4.239 16 H 0.162 0.838 17 C -0.170 4.170 18 C -0.007 4.007 19 H 0.195 0.805 20 F -0.180 7.180 21 H 0.143 0.857 22 H 0.159 0.841 23 H 0.086 0.914 24 H 0.113 0.887 25 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.636 -2.379 -10.022 10.632 hybrid contribution 0.458 0.643 1.402 1.609 sum 3.094 -1.736 -8.620 9.322 Atomic orbital electron populations 1.80908 1.14695 1.11389 1.11755 1.29833 0.95839 0.90469 0.89913 1.19133 0.79979 0.99276 0.92002 1.43764 1.56390 1.04811 1.12134 1.19610 1.32347 0.99333 0.95869 0.90381 1.25887 0.95317 0.97876 1.00509 1.69962 1.21166 1.17277 1.44552 0.85018 0.78395 0.77493 0.77852 1.18133 1.20876 1.20652 1.20094 0.82688 0.81883 0.89579 1.90572 1.51791 1.59816 1.47584 1.22941 1.05531 0.98487 0.96954 0.83765 1.23812 0.94513 0.97651 1.01024 1.22635 1.03007 0.86445 0.88629 0.80500 1.92804 1.89650 1.78116 1.57426 0.85667 0.84127 0.91404 0.88718 0.81392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.38 18.54 20.01 0.37 -23.01 15 2 C 0.26 10.88 12.89 89.44 1.15 12.03 15 3 C 0.22 8.35 4.80 84.57 0.41 8.76 15 4 N -0.45 -21.25 2.60 -645.42 -1.68 -22.93 15 5 C -0.34 -18.30 9.35 84.04 0.79 -17.52 15 6 H 0.08 4.55 7.37 -2.91 -0.02 4.53 15 7 C 0.01 0.32 4.87 84.93 0.41 0.73 15 8 N -0.89 -44.37 9.47 21.67 0.21 -44.17 15 9 Si 0.99 40.33 29.61 68.60 2.03 42.36 15 10 H -0.26 -9.72 7.11 99.48 0.71 -9.01 15 11 H -0.28 -11.41 7.11 99.48 0.71 -10.71 15 12 H -0.28 -11.96 7.11 99.48 0.71 -11.25 15 13 C 0.47 21.77 7.35 87.65 0.64 22.41 15 14 O -0.61 -34.60 14.78 -3.07 -0.05 -34.64 15 15 C -0.22 -6.96 4.80 -11.54 -0.06 -7.02 15 16 H 0.14 3.95 6.71 -2.38 -0.02 3.93 15 17 C -0.13 -3.00 10.22 30.61 0.31 -2.69 15 18 C 0.03 0.81 7.83 30.61 0.24 1.05 15 19 H 0.18 3.26 8.14 -2.39 -0.02 3.24 15 20 F -0.20 -7.95 15.71 44.97 0.71 -7.25 15 21 H 0.13 4.87 6.34 -2.39 -0.02 4.85 15 22 H 0.14 3.65 6.99 -2.39 -0.02 3.63 15 23 H 0.28 13.19 8.31 -92.71 -0.77 12.42 15 24 H 0.09 2.48 8.14 -2.39 -0.02 2.46 15 25 H 0.17 1.99 8.14 -2.39 -0.02 1.97 15 Total: -1.00 -72.52 234.28 6.71 -65.81 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: 1.22 Total: 6.06 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: 3.90 Total: 17.76 kcal Atomic # 7 Polarization: -89.01 SS G_CDS: -1.10 Total: -90.11 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -0.05 Total: -34.64 kcal Atomic # 9 Polarization: -7.95 SS G_CDS: 0.71 Total: -7.25 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -72.52 6.71 -65.81 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527586179.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.171 kcal (2) G-P(sol) polarization free energy of solvation -72.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds