Wall clock time and date at job start Sun Mar 29 2020 21:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47077 * 178.96300 * 3 2 1 5 5 C 1.37093 * 120.00239 * 96.07643 * 4 3 2 6 6 H 1.08001 * 120.00204 * 162.27974 * 5 4 3 7 7 C 1.38947 * 120.00428 * 342.27916 * 5 4 3 8 8 N 1.31416 * 119.99792 * 339.21088 * 7 5 4 9 9 Si 1.86793 * 120.00411 * 159.20377 * 7 5 4 10 10 H 1.48501 * 109.47291 * 180.02562 * 9 7 5 11 11 H 1.48505 * 109.47392 * 300.00556 * 9 7 5 12 12 H 1.48502 * 109.47100 * 60.00024 * 9 7 5 13 13 C 1.34784 * 119.99743 * 276.07857 * 4 3 2 14 14 O 1.21287 * 119.99756 * 180.02562 * 13 4 3 15 15 C 1.50693 * 119.99849 * 359.97438 * 13 4 3 16 16 H 1.09006 * 115.55027 * 34.33149 * 15 13 4 17 17 C 1.53002 * 117.50216 * 248.61993 * 15 13 4 18 18 C 1.52997 * 59.99918 * 252.51208 * 17 15 13 19 19 H 1.08999 * 117.49755 * 107.48954 * 18 17 15 20 20 F 1.39900 * 117.49764 * 252.50322 * 18 17 15 21 21 H 1.08994 * 109.47605 * 58.95825 * 3 2 1 22 22 H 1.09002 * 109.47469 * 298.95750 * 3 2 1 23 23 H 0.96997 * 120.00423 * 179.97438 * 8 7 5 24 24 H 1.09000 * 117.49526 * 0.02562 * 17 15 13 25 25 H 1.08998 * 117.50079 * 145.02068 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0956 1.3819 -0.0250 5 6 3.4423 2.0077 1.1444 6 1 4.0582 2.8946 1.1203 7 6 3.0014 1.5012 2.3608 8 7 1.9557 0.7062 2.4012 9 14 3.8950 1.9498 3.9386 10 1 3.2324 1.2846 5.0891 11 1 5.3074 1.4989 3.8530 12 1 3.8562 3.4222 4.1280 13 6 3.2034 2.0374 -1.1978 14 8 3.6076 3.1807 -1.2185 15 6 2.8228 1.3492 -2.4833 16 1 1.9905 0.6488 -2.4130 17 6 3.9473 1.0146 -3.4653 18 6 2.9675 2.1465 -3.7810 19 1 3.3381 3.1687 -3.7050 20 9 2.0219 1.9205 -4.7870 21 1 2.9716 -0.5291 -0.8804 22 1 2.9715 -0.4967 0.8992 23 1 1.6480 0.3523 3.2503 24 1 4.9625 1.2918 -3.1814 25 1 3.8551 0.0938 -4.0413 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527586180.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:49 Heat of formation + Delta-G solvation = -19.211112 kcal Electronic energy + Delta-G solvation = -13805.420805 eV Core-core repulsion = 11121.148329 eV Total energy + Delta-G solvation = -2684.272476 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.070 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.38508 -39.13131 -36.16478 -35.13722 -34.25085 -31.87301 -27.56856 -25.68029 -23.01389 -22.11231 -19.06650 -17.99744 -17.33335 -16.29394 -15.50629 -15.43581 -14.51739 -14.41411 -13.95248 -13.68861 -13.06426 -12.93667 -12.30776 -11.97645 -11.90943 -11.63684 -11.32607 -11.18727 -10.62685 -10.49009 -10.47765 -10.17175 -9.78193 -9.32629 -8.74600 -8.12871 -6.57438 -4.07540 3.01322 3.18114 3.20253 3.27250 3.63650 3.90996 4.01779 4.03965 4.27682 4.71134 4.87680 4.95578 5.17890 5.20245 5.32791 5.64880 5.79809 6.03315 6.13219 6.35331 6.46365 7.40154 7.80602 8.19498 8.69246 8.90639 9.10996 9.64075 10.48472 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.039615 B = 0.010227 C = 0.008723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.639661 B = 2737.299229 C = 3209.005263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.243 3.757 3 C 0.221 3.779 4 N -0.433 5.433 5 C -0.316 4.316 6 H 0.110 0.890 7 C 0.033 3.967 8 N -0.876 5.876 9 Si 0.931 3.069 10 H -0.284 1.284 11 H -0.271 1.271 12 H -0.272 1.272 13 C 0.482 3.518 14 O -0.573 6.573 15 C -0.190 4.190 16 H 0.121 0.879 17 C -0.167 4.167 18 C 0.041 3.959 19 H 0.144 0.856 20 F -0.188 7.188 21 H 0.086 0.914 22 H 0.130 0.870 23 H 0.275 0.725 24 H 0.115 0.885 25 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.249 -3.785 -5.865 8.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.075 4.075 3 C 0.094 3.906 4 N -0.152 5.152 5 C -0.443 4.443 6 H 0.128 0.872 7 C -0.171 4.171 8 N -0.514 5.514 9 Si 0.757 3.243 10 H -0.209 1.209 11 H -0.196 1.196 12 H -0.197 1.197 13 C 0.271 3.729 14 O -0.457 6.457 15 C -0.212 4.212 16 H 0.139 0.861 17 C -0.205 4.205 18 C 0.005 3.995 19 H 0.162 0.838 20 F -0.168 7.168 21 H 0.104 0.896 22 H 0.147 0.853 23 H 0.086 0.914 24 H 0.133 0.867 25 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.640 -3.320 -5.710 7.542 hybrid contribution 0.401 -0.015 0.968 1.048 sum 4.042 -3.335 -4.742 7.067 Atomic orbital electron populations 1.80906 1.13596 1.08378 1.12113 1.29320 0.95397 0.92557 0.90226 1.18788 0.81532 0.86321 1.03991 1.43524 1.55829 1.09989 1.05883 1.19717 1.30230 1.12917 0.81459 0.87245 1.25318 0.94957 0.97092 0.99776 1.69860 1.20168 1.33409 1.27958 0.85911 0.79427 0.79054 0.79894 1.20943 1.19602 1.19734 1.18964 0.84196 0.86148 0.83621 1.90542 1.50930 1.17732 1.86455 1.22995 1.02629 1.03971 0.91605 0.86142 1.23621 0.96281 0.99708 1.00879 1.22067 0.92106 0.98857 0.86466 0.83835 1.92775 1.66450 1.96181 1.61410 0.89621 0.85278 0.91413 0.86712 0.87386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.24 18.54 42.15 0.78 -10.46 15 2 C 0.24 5.37 12.81 -20.76 -0.27 5.11 15 3 C 0.22 4.32 4.80 -6.83 -0.03 4.29 15 4 N -0.43 -9.97 2.60 -117.94 -0.31 -10.27 15 5 C -0.32 -8.00 9.33 -14.94 -0.14 -8.14 15 6 H 0.11 2.90 7.38 -52.49 -0.39 2.51 15 7 C 0.03 0.79 4.88 -17.47 -0.09 0.71 15 8 N -0.88 -21.77 9.46 55.50 0.52 -21.24 15 9 Si 0.93 19.21 29.60 -169.99 -5.03 14.18 15 10 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 11 H -0.27 -5.42 7.11 56.52 0.40 -5.02 15 12 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 13 C 0.48 10.78 7.35 -10.99 -0.08 10.70 15 14 O -0.57 -14.61 15.91 5.55 0.09 -14.52 15 15 C -0.19 -3.34 4.79 -91.78 -0.44 -3.78 15 16 H 0.12 2.06 6.71 -51.93 -0.35 1.72 15 17 C -0.17 -2.27 10.22 -26.73 -0.27 -2.54 15 18 C 0.04 0.66 7.41 -26.73 -0.20 0.47 15 19 H 0.14 2.31 7.67 -51.93 -0.40 1.91 15 20 F -0.19 -3.11 17.60 2.25 0.04 -3.07 15 21 H 0.09 1.28 6.99 -51.93 -0.36 0.92 15 22 H 0.13 2.56 6.42 -51.93 -0.33 2.23 15 23 H 0.28 6.64 8.31 -40.82 -0.34 6.30 15 24 H 0.11 1.48 8.14 -51.93 -0.42 1.06 15 25 H 0.11 1.20 8.14 -51.93 -0.42 0.78 15 LS Contribution 236.38 15.07 3.56 3.56 Total: -1.00 -29.75 236.38 -3.67 -33.42 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -1.81 Total: 1.60 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -1.52 Total: 6.80 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 1.00 Total: -41.97 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.09 Total: -14.52 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.04 Total: -3.07 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.75 -3.67 -33.42 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527586180.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.210 kcal (2) G-P(sol) polarization free energy of solvation -29.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds