Wall clock time and date at job start Sun Mar 29 2020 21:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47077 * 178.96300 * 3 2 1 5 5 C 1.37093 * 120.00239 * 96.07643 * 4 3 2 6 6 H 1.08001 * 120.00204 * 162.27974 * 5 4 3 7 7 C 1.38947 * 120.00428 * 342.27916 * 5 4 3 8 8 N 1.31416 * 119.99792 * 339.21088 * 7 5 4 9 9 Si 1.86793 * 120.00411 * 159.20377 * 7 5 4 10 10 H 1.48501 * 109.47291 * 180.02562 * 9 7 5 11 11 H 1.48505 * 109.47392 * 300.00556 * 9 7 5 12 12 H 1.48502 * 109.47100 * 60.00024 * 9 7 5 13 13 C 1.34784 * 119.99743 * 276.07857 * 4 3 2 14 14 O 1.21287 * 119.99756 * 180.02562 * 13 4 3 15 15 C 1.50693 * 119.99849 * 359.97438 * 13 4 3 16 16 H 1.09006 * 115.55027 * 34.33149 * 15 13 4 17 17 C 1.53002 * 117.50216 * 248.61993 * 15 13 4 18 18 C 1.52997 * 59.99918 * 252.51208 * 17 15 13 19 19 H 1.08999 * 117.49755 * 107.48954 * 18 17 15 20 20 F 1.39900 * 117.49764 * 252.50322 * 18 17 15 21 21 H 1.08994 * 109.47605 * 58.95825 * 3 2 1 22 22 H 1.09002 * 109.47469 * 298.95750 * 3 2 1 23 23 H 0.96997 * 120.00423 * 179.97438 * 8 7 5 24 24 H 1.09000 * 117.49526 * 0.02562 * 17 15 13 25 25 H 1.08998 * 117.50079 * 145.02068 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0956 1.3819 -0.0250 5 6 3.4423 2.0077 1.1444 6 1 4.0582 2.8946 1.1203 7 6 3.0014 1.5012 2.3608 8 7 1.9557 0.7062 2.4012 9 14 3.8950 1.9498 3.9386 10 1 3.2324 1.2846 5.0891 11 1 5.3074 1.4989 3.8530 12 1 3.8562 3.4222 4.1280 13 6 3.2034 2.0374 -1.1978 14 8 3.6076 3.1807 -1.2185 15 6 2.8228 1.3492 -2.4833 16 1 1.9905 0.6488 -2.4130 17 6 3.9473 1.0146 -3.4653 18 6 2.9675 2.1465 -3.7810 19 1 3.3381 3.1687 -3.7050 20 9 2.0219 1.9205 -4.7870 21 1 2.9716 -0.5291 -0.8804 22 1 2.9715 -0.4967 0.8992 23 1 1.6480 0.3523 3.2503 24 1 4.9625 1.2918 -3.1814 25 1 3.8551 0.0938 -4.0413 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001527586180.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:49 Heat of formation + Delta-G solvation = -37.704547 kcal Electronic energy + Delta-G solvation = -13806.222741 eV Core-core repulsion = 11121.148329 eV Total energy + Delta-G solvation = -2685.074412 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.070 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.65909 -40.81092 -37.83782 -36.68518 -36.00346 -33.71944 -29.27196 -27.40339 -24.57118 -23.31114 -20.65056 -19.79239 -18.85309 -17.96648 -17.14584 -16.78913 -16.15030 -15.84711 -15.47392 -15.38555 -14.77307 -14.48350 -13.91699 -13.56736 -13.32533 -13.25309 -13.01544 -12.88672 -12.35652 -12.22989 -12.11787 -11.48005 -11.15171 -11.05366 -10.51051 -9.96838 -8.42981 -5.99963 1.36514 1.49163 1.58287 1.67229 1.95836 2.21143 2.33223 2.63673 2.82143 2.99359 3.31544 3.56512 3.69317 3.78908 4.07172 4.24221 4.57054 4.73200 4.88371 4.92161 5.17646 5.46443 5.98873 6.35365 6.95977 7.06916 7.30507 7.85981 8.60608 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.039615 B = 0.010227 C = 0.008723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.639661 B = 2737.299229 C = 3209.005263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.256 3.744 3 C 0.222 3.778 4 N -0.446 5.446 5 C -0.345 4.345 6 H 0.086 0.914 7 C 0.006 3.994 8 N -0.893 5.893 9 Si 0.991 3.009 10 H -0.280 1.280 11 H -0.258 1.258 12 H -0.283 1.283 13 C 0.478 3.522 14 O -0.615 6.615 15 C -0.210 4.210 16 H 0.127 0.873 17 C -0.122 4.122 18 C 0.033 3.967 19 H 0.137 0.863 20 F -0.191 7.191 21 H 0.139 0.861 22 H 0.128 0.872 23 H 0.276 0.724 24 H 0.125 0.875 25 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.254 -5.063 -6.478 10.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.062 4.062 3 C 0.096 3.904 4 N -0.165 5.165 5 C -0.472 4.472 6 H 0.104 0.896 7 C -0.197 4.197 8 N -0.531 5.531 9 Si 0.815 3.185 10 H -0.205 1.205 11 H -0.182 1.182 12 H -0.208 1.208 13 C 0.268 3.732 14 O -0.501 6.501 15 C -0.231 4.231 16 H 0.145 0.855 17 C -0.160 4.160 18 C -0.003 4.003 19 H 0.155 0.845 20 F -0.171 7.171 21 H 0.157 0.843 22 H 0.145 0.855 23 H 0.086 0.914 24 H 0.143 0.857 25 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.643 -4.626 -6.335 9.115 hybrid contribution 0.076 0.432 1.120 1.203 sum 4.718 -4.194 -5.215 8.188 Atomic orbital electron populations 1.80906 1.14839 1.09562 1.13581 1.29843 0.95917 0.91409 0.89004 1.19126 0.79879 0.84997 1.06410 1.43693 1.55922 1.11286 1.05555 1.19661 1.31180 1.13245 0.83120 0.89588 1.25952 0.95111 0.96753 1.01857 1.69942 1.20699 1.33935 1.28523 0.85026 0.79030 0.77960 0.76530 1.20489 1.18203 1.20839 1.19750 0.82679 0.85845 0.84959 1.90509 1.52551 1.19699 1.87375 1.22838 1.05305 1.05156 0.89836 0.85470 1.23810 0.95218 0.99782 0.97146 1.22101 0.93033 0.99689 0.85510 0.84539 1.92772 1.66827 1.96202 1.61301 0.84338 0.85474 0.91403 0.85686 0.83630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.06 18.54 20.00 0.37 -23.69 15 2 C 0.26 11.04 12.81 89.44 1.15 12.18 15 3 C 0.22 8.31 4.80 84.57 0.41 8.71 15 4 N -0.45 -20.28 2.60 -645.44 -1.68 -21.96 15 5 C -0.34 -17.58 9.33 84.04 0.78 -16.80 15 6 H 0.09 4.70 7.38 -2.91 -0.02 4.68 15 7 C 0.01 0.27 4.88 84.93 0.41 0.69 15 8 N -0.89 -43.95 9.46 21.66 0.20 -43.75 15 9 Si 0.99 39.09 29.60 68.60 2.03 41.12 15 10 H -0.28 -10.77 7.11 99.48 0.71 -10.07 15 11 H -0.26 -9.58 7.11 99.48 0.71 -8.87 15 12 H -0.28 -11.57 7.11 99.48 0.71 -10.87 15 13 C 0.48 21.08 7.35 87.65 0.64 21.73 15 14 O -0.62 -31.78 15.91 -3.05 -0.05 -31.83 15 15 C -0.21 -6.90 4.79 -11.54 -0.06 -6.95 15 16 H 0.13 4.03 6.71 -2.38 -0.02 4.01 15 17 C -0.12 -2.83 10.22 30.59 0.31 -2.51 15 18 C 0.03 0.99 7.41 30.59 0.23 1.22 15 19 H 0.14 4.29 7.67 -2.39 -0.02 4.27 15 20 F -0.19 -5.91 17.60 44.97 0.79 -5.12 15 21 H 0.14 3.66 6.99 -2.39 -0.02 3.64 15 22 H 0.13 4.85 6.42 -2.39 -0.02 4.84 15 23 H 0.28 13.13 8.31 -92.71 -0.77 12.35 15 24 H 0.12 2.73 8.14 -2.39 -0.02 2.71 15 25 H 0.15 2.37 8.14 -2.39 -0.02 2.35 15 Total: -1.00 -64.67 236.38 6.77 -57.90 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 1.22 Total: 9.06 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: 3.88 Total: 18.27 kcal Atomic # 7 Polarization: -88.29 SS G_CDS: -1.10 Total: -89.40 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.05 Total: -31.83 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.79 Total: -5.12 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -64.67 6.77 -57.90 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527586180.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.194 kcal (2) G-P(sol) polarization free energy of solvation -64.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds