Wall clock time and date at job start Sun Mar 29 2020 21:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00066 * 2 1 4 4 H 1.48506 * 109.46915 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47336 * 300.00007 * 3 2 1 6 6 H 1.48503 * 109.46980 * 60.00506 * 3 2 1 7 7 C 1.37884 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99894 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99772 * 359.97438 * 7 2 1 10 10 S 1.81390 * 109.46944 * 180.02562 * 9 7 2 11 11 C 1.81405 * 103.00038 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47299 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47192 * 179.97438 * 12 11 10 14 14 C 1.39874 * 126.04031 * 269.99886 * 13 12 11 15 15 N 1.30836 * 108.20052 * 179.73886 * 14 13 12 16 16 N 1.40084 * 108.20904 * 0.40640 * 15 14 13 17 17 H 0.97001 * 126.04219 * 179.85882 * 16 15 14 18 18 C 1.34947 * 107.92164 * 359.58781 * 16 15 14 19 19 H 0.96997 * 119.99545 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.46718 * 60.00411 * 9 7 2 21 21 H 1.08994 * 109.47241 * 300.00538 * 9 7 2 22 22 H 1.08994 * 109.47051 * 59.99428 * 11 10 9 23 23 H 1.09004 * 109.46576 * 299.99869 * 11 10 9 24 24 H 1.09007 * 109.47384 * 59.99924 * 12 11 10 25 25 H 1.09002 * 109.46954 * 299.99941 * 12 11 10 26 26 H 1.08001 * 125.89534 * 0.02562 * 14 13 12 27 27 H 1.08006 * 126.12506 * 180.22115 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 16 2.4298 -3.8779 -0.0005 11 6 1.3516 -5.3367 -0.0013 12 6 2.2084 -6.6043 -0.0008 13 6 1.3126 -7.8161 -0.0008 14 6 0.8231 -8.4777 1.1302 15 7 0.0784 -9.4759 0.7294 16 7 0.0780 -9.4869 -0.6714 17 1 -0.3906 -10.1204 -1.2371 18 6 0.8397 -8.4566 -1.0949 19 1 -0.4849 0.8401 0.0004 20 1 0.6241 -2.5567 -0.8904 21 1 0.6247 -2.5571 0.8896 22 1 0.7227 -5.3231 -0.8914 23 1 0.7221 -5.3236 0.8885 24 1 2.8370 -6.6176 0.8897 25 1 2.8382 -6.6175 -0.8903 26 1 1.0215 -8.2079 2.1570 27 1 1.0369 -8.1910 -2.1231 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001613848237.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:41 Heat of formation + Delta-G solvation = 53.069864 kcal Electronic energy + Delta-G solvation = -11068.849611 eV Core-core repulsion = 8953.924649 eV Total energy + Delta-G solvation = -2114.924962 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.19143 -33.96676 -33.10920 -31.33937 -28.73985 -28.44632 -23.79895 -22.64238 -21.96751 -19.96171 -17.76853 -16.45881 -15.33411 -14.69989 -14.65434 -14.41365 -14.22968 -13.42246 -12.86073 -12.52787 -12.15861 -12.08865 -11.89784 -11.10936 -10.87227 -10.64882 -10.50283 -9.85118 -9.70990 -9.51403 -8.79600 -8.59162 -8.49459 -6.62686 -6.16490 -4.20195 1.82664 2.59387 2.82617 2.93360 3.26874 3.33978 3.40738 3.95283 4.38156 4.77646 4.85950 5.20647 5.26111 5.47419 5.54883 5.65906 5.84302 5.97261 6.35739 6.39112 6.60977 7.14496 7.16555 7.17791 7.57881 7.78685 8.05466 8.82217 9.42627 10.94966 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.084842 B = 0.005032 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 329.947577 B = 5563.553058 C = 5687.589184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.510 4.510 8 H 0.068 0.932 9 C 0.093 3.907 10 S -0.317 6.317 11 C -0.080 4.080 12 C -0.022 4.022 13 C -0.225 4.225 14 C 0.057 3.943 15 N -0.302 5.302 16 N -0.482 5.482 17 H 0.437 0.563 18 C 0.059 3.941 19 H 0.264 0.736 20 H 0.034 0.966 21 H 0.035 0.965 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.184 0.816 27 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.010 -15.133 -1.963 15.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.549 4.549 8 H 0.086 0.914 9 C -0.054 4.054 10 S -0.090 6.090 11 C -0.229 4.229 12 C -0.062 4.062 13 C -0.238 4.238 14 C -0.129 4.129 15 N -0.124 5.124 16 N -0.190 5.190 17 H 0.280 0.720 18 C -0.089 4.089 19 H 0.074 0.926 20 H 0.052 0.948 21 H 0.053 0.947 22 H 0.087 0.913 23 H 0.089 0.911 24 H 0.096 0.904 25 H 0.092 0.908 26 H 0.201 0.799 27 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.234 -15.943 -1.590 16.070 hybrid contribution -0.842 1.294 -0.605 1.659 sum 0.392 -14.649 -2.195 14.818 Atomic orbital electron populations 1.69970 1.06152 1.27151 1.49977 1.24982 0.94968 0.99303 0.94764 0.86303 0.80120 0.82594 0.77687 1.19392 1.20791 1.20761 1.20754 0.93517 0.88797 1.51837 0.91399 1.21011 0.93592 0.90876 0.99946 1.86541 1.21755 1.02676 1.98077 1.23228 1.00305 0.95371 1.03958 1.19602 0.95137 0.87995 1.03428 1.20211 1.09062 1.02766 0.91789 1.23889 0.95676 0.93140 1.00225 1.77293 1.23314 1.22869 0.88931 1.46269 1.41131 1.25801 1.05795 0.71952 1.22443 0.95647 0.90551 1.00248 0.92615 0.94766 0.94711 0.91305 0.91090 0.90440 0.90751 0.79944 0.80655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.57 15 2 C 0.06 1.79 5.46 -17.82 -0.10 1.70 15 3 Si 0.91 21.52 29.54 -169.99 -5.02 16.50 15 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 15 7 C -0.51 -14.55 9.13 -34.44 -0.31 -14.87 15 8 H 0.07 1.94 7.71 -52.49 -0.40 1.53 15 9 C 0.09 2.45 5.70 36.01 0.21 2.65 15 10 S -0.32 -6.91 21.66 -107.50 -2.33 -9.24 15 11 C -0.08 -1.35 5.92 37.16 0.22 -1.13 15 12 C -0.02 -0.30 5.71 -27.88 -0.16 -0.46 15 13 C -0.23 -2.78 5.35 -105.05 -0.56 -3.34 15 14 C 0.06 0.72 11.96 -17.36 -0.21 0.51 15 15 N -0.30 -3.90 12.70 30.63 0.39 -3.52 15 16 N -0.48 -4.89 7.36 30.45 0.22 -4.66 15 17 H 0.44 2.90 8.96 -182.61 -1.64 1.26 15 18 C 0.06 0.61 11.90 -17.22 -0.21 0.40 15 19 H 0.26 7.27 8.31 -40.82 -0.34 6.93 15 20 H 0.03 0.94 8.14 -51.92 -0.42 0.52 15 21 H 0.03 0.96 8.14 -51.93 -0.42 0.53 15 22 H 0.07 1.15 8.14 -51.93 -0.42 0.73 15 23 H 0.07 1.21 8.14 -51.92 -0.42 0.79 15 24 H 0.08 1.03 8.14 -51.93 -0.42 0.61 15 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 26 H 0.18 1.88 8.06 -52.49 -0.42 1.45 15 27 H 0.18 1.29 8.06 -52.48 -0.42 0.87 15 LS Contribution 256.94 15.07 3.87 3.87 Total: -1.00 -31.85 256.94 -7.81 -39.66 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -4.56 Total: -2.51 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -1.12 Total: -14.54 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 1.35 Total: -33.74 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -6.91 SS G_CDS: -2.33 Total: -9.24 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.85 -7.81 -39.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001613848237.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.728 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds