Wall clock time and date at job start Sun Mar 29 2020 21:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00066 * 2 1 4 4 H 1.48506 * 109.46915 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47336 * 300.00007 * 3 2 1 6 6 H 1.48503 * 109.46980 * 60.00506 * 3 2 1 7 7 C 1.37884 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99894 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99772 * 359.97438 * 7 2 1 10 10 S 1.81390 * 109.46944 * 180.02562 * 9 7 2 11 11 C 1.81405 * 103.00038 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47299 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47192 * 179.97438 * 12 11 10 14 14 C 1.39874 * 126.04031 * 269.99886 * 13 12 11 15 15 N 1.30836 * 108.20052 * 179.73886 * 14 13 12 16 16 N 1.40084 * 108.20904 * 0.40640 * 15 14 13 17 17 H 0.97001 * 126.04219 * 179.85882 * 16 15 14 18 18 C 1.34947 * 107.92164 * 359.58781 * 16 15 14 19 19 H 0.96997 * 119.99545 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.46718 * 60.00411 * 9 7 2 21 21 H 1.08994 * 109.47241 * 300.00538 * 9 7 2 22 22 H 1.08994 * 109.47051 * 59.99428 * 11 10 9 23 23 H 1.09004 * 109.46576 * 299.99869 * 11 10 9 24 24 H 1.09007 * 109.47384 * 59.99924 * 12 11 10 25 25 H 1.09002 * 109.46954 * 299.99941 * 12 11 10 26 26 H 1.08001 * 125.89534 * 0.02562 * 14 13 12 27 27 H 1.08006 * 126.12506 * 180.22115 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 16 2.4298 -3.8779 -0.0005 11 6 1.3516 -5.3367 -0.0013 12 6 2.2084 -6.6043 -0.0008 13 6 1.3126 -7.8161 -0.0008 14 6 0.8231 -8.4777 1.1302 15 7 0.0784 -9.4759 0.7294 16 7 0.0780 -9.4869 -0.6714 17 1 -0.3906 -10.1204 -1.2371 18 6 0.8397 -8.4566 -1.0949 19 1 -0.4849 0.8401 0.0004 20 1 0.6241 -2.5567 -0.8904 21 1 0.6247 -2.5571 0.8896 22 1 0.7227 -5.3231 -0.8914 23 1 0.7221 -5.3236 0.8885 24 1 2.8370 -6.6176 0.8897 25 1 2.8382 -6.6175 -0.8903 26 1 1.0215 -8.2079 2.1570 27 1 1.0369 -8.1910 -2.1231 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001613848237.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:41 Heat of formation + Delta-G solvation = 32.865372 kcal Electronic energy + Delta-G solvation = -11069.725743 eV Core-core repulsion = 8953.924649 eV Total energy + Delta-G solvation = -2115.801094 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.06754 -35.28208 -35.06922 -32.22627 -30.66449 -29.73751 -25.50671 -24.22017 -22.88569 -20.87404 -18.66846 -18.59905 -17.11991 -16.37151 -15.78742 -15.48209 -15.26137 -14.89708 -14.50521 -14.29668 -13.68590 -13.56098 -13.35185 -12.76341 -12.50325 -12.23913 -11.85623 -11.58887 -11.34323 -10.74211 -10.63970 -10.58665 -9.43280 -8.41753 -8.32128 -6.45250 0.94472 1.10753 1.41293 1.41569 1.56770 1.84553 2.09454 2.11612 2.38227 3.02370 3.87337 4.04473 4.19880 4.30222 4.50541 4.67422 4.74727 4.87841 4.96254 4.96955 5.20387 5.32734 5.58931 5.68799 5.90715 6.46393 6.62961 6.72532 7.22888 8.80229 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.084842 B = 0.005032 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 329.947577 B = 5563.553058 C = 5687.589184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.012 3.988 3 Si 0.978 3.022 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.063 0.937 9 C 0.092 3.908 10 S -0.319 6.319 11 C -0.066 4.066 12 C -0.008 4.008 13 C -0.250 4.250 14 C 0.049 3.951 15 N -0.332 5.332 16 N -0.472 5.472 17 H 0.452 0.548 18 C 0.075 3.925 19 H 0.270 0.730 20 H 0.012 0.988 21 H 0.011 0.989 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.195 0.805 27 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.702 -15.615 -2.633 15.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.189 4.189 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.081 0.919 9 C -0.056 4.056 10 S -0.092 6.092 11 C -0.214 4.214 12 C -0.047 4.047 13 C -0.264 4.264 14 C -0.138 4.138 15 N -0.155 5.155 16 N -0.181 5.181 17 H 0.299 0.701 18 C -0.073 4.073 19 H 0.079 0.921 20 H 0.031 0.969 21 H 0.029 0.971 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.097 0.903 25 H 0.102 0.898 26 H 0.211 0.789 27 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 1.918 -16.453 -2.261 16.718 hybrid contribution -1.108 1.307 -0.430 1.766 sum 0.810 -15.146 -2.691 15.405 Atomic orbital electron populations 1.70074 1.07760 1.28469 1.50353 1.25956 0.95890 1.03186 0.93848 0.85202 0.78822 0.77691 0.78169 1.18760 1.19782 1.19849 1.21065 0.93487 0.90233 1.52505 0.91852 1.20710 0.94121 0.93067 0.97664 1.86323 1.21679 1.03152 1.98033 1.23365 0.99941 0.94134 1.03965 1.19434 0.94777 0.86521 1.04001 1.20134 1.10524 1.03090 0.92624 1.24179 0.95429 0.93044 1.01101 1.77252 1.24225 1.23578 0.90451 1.46326 1.40656 1.25933 1.05202 0.70150 1.22939 0.93770 0.89365 1.01259 0.92128 0.96926 0.97103 0.90943 0.91448 0.90327 0.89791 0.78856 0.77408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.24 13.29 21.45 0.28 -54.95 15 2 C 0.01 0.66 5.46 84.66 0.46 1.12 15 3 Si 0.98 43.98 29.54 68.60 2.03 46.00 15 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 15 5 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 7 C -0.53 -30.96 9.13 25.60 0.23 -30.73 15 8 H 0.06 3.65 7.71 -2.91 -0.02 3.62 15 9 C 0.09 4.99 5.70 71.24 0.41 5.39 15 10 S -0.32 -13.85 21.66 -56.49 -1.22 -15.07 15 11 C -0.07 -2.14 5.92 71.98 0.43 -1.72 15 12 C -0.01 -0.19 5.71 29.85 0.17 -0.02 15 13 C -0.25 -5.66 5.35 -20.14 -0.11 -5.77 15 14 C 0.05 1.14 11.96 85.24 1.02 2.16 15 15 N -0.33 -8.10 12.70 -57.02 -0.72 -8.83 15 16 N -0.47 -8.43 7.36 -57.59 -0.42 -8.86 15 17 H 0.45 4.86 8.96 -213.33 -1.91 2.94 15 18 C 0.08 1.34 11.90 83.54 0.99 2.33 15 19 H 0.27 14.91 8.31 -92.71 -0.77 14.13 15 20 H 0.01 0.71 8.14 -2.39 -0.02 0.69 15 21 H 0.01 0.62 8.14 -2.39 -0.02 0.60 15 22 H 0.07 2.33 8.14 -2.39 -0.02 2.31 15 23 H 0.07 2.26 8.14 -2.39 -0.02 2.24 15 24 H 0.08 1.95 8.14 -2.38 -0.02 1.93 15 25 H 0.08 1.95 8.14 -2.39 -0.02 1.93 15 26 H 0.19 3.81 8.06 -2.91 -0.02 3.78 15 27 H 0.21 2.21 8.06 -2.91 -0.02 2.19 15 Total: -1.00 -68.36 256.94 2.80 -65.56 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -0.75 Total: 3.37 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 3.60 Total: -27.22 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: -0.86 Total: -72.64 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -13.85 SS G_CDS: -1.22 Total: -15.07 kcal Total: -68.36 2.80 -65.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001613848237.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.424 kcal (2) G-P(sol) polarization free energy of solvation -68.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds