Wall clock time and date at job start Sun Mar 29 2020 21:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36935 * 119.99621 * 2 1 4 4 H 1.07999 * 120.00172 * 203.04583 * 3 2 1 5 5 C 1.38810 * 120.00237 * 23.04378 * 3 2 1 6 6 N 1.31621 * 119.99904 * 12.93884 * 5 3 2 7 7 Si 1.86800 * 120.00280 * 192.93664 * 5 3 2 8 8 H 1.48496 * 109.46978 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.46854 * 120.00099 * 7 5 3 10 10 H 1.48501 * 109.47286 * 239.99955 * 7 5 3 11 11 C 1.46499 * 120.00268 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47108 * 89.99864 * 11 2 1 13 13 C 1.50705 * 109.46785 * 180.02562 * 12 11 2 14 14 C 1.33636 * 126.03975 * 89.72121 * 13 12 11 15 15 N 1.31779 * 114.50111 * 179.78795 * 14 13 12 16 16 C 1.29027 * 117.12268 * 0.51731 * 15 14 13 17 17 S 1.70971 * 110.16739 * 359.71448 * 16 15 14 18 18 H 1.09001 * 109.46978 * 275.12065 * 1 2 3 19 19 H 1.08993 * 109.47193 * 35.12400 * 1 2 3 20 20 H 1.08997 * 109.46629 * 155.12278 * 1 2 3 21 21 H 0.97004 * 120.00077 * 179.97438 * 6 5 3 22 22 H 1.08998 * 109.47123 * 210.00043 * 11 2 1 23 23 H 1.09003 * 109.46663 * 329.99650 * 11 2 1 24 24 H 1.08998 * 109.47274 * 300.00086 * 12 11 2 25 25 H 1.08995 * 109.46949 * 60.00060 * 12 11 2 26 26 H 1.08003 * 122.74565 * 359.96644 * 14 13 12 27 27 H 1.08000 * 124.91677 * 179.68580 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2234 -0.3661 5 6 1.5387 2.3401 0.4705 6 7 0.4118 2.2597 1.1459 7 14 2.3156 4.0074 0.1453 8 1 3.5690 3.8266 -0.6302 9 1 1.3712 4.8506 -0.6307 10 1 2.6239 4.6705 1.4378 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7097 -1.4432 13 6 3.2056 -3.0151 -1.4437 14 6 2.6625 -4.2361 -1.4391 15 7 3.5359 -5.2228 -1.4452 16 6 4.7857 -4.9021 -1.4443 17 16 4.9577 -3.2011 -1.4430 18 1 -0.3633 0.0917 1.0236 19 1 -0.3633 0.8405 -0.5912 20 1 -0.3632 -0.9323 -0.4323 21 1 -0.0150 3.0662 1.4751 22 1 3.1500 -1.1385 0.5133 23 1 1.6085 -2.0285 0.5130 24 1 1.5002 -1.8398 -1.9571 25 1 3.0416 -0.9498 -1.9567 26 1 1.5951 -4.4007 -1.4339 27 1 5.6046 -5.6062 -1.4439 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653305711.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:52 Heat of formation + Delta-G solvation = 62.374029 kcal Electronic energy + Delta-G solvation = -11686.196397 eV Core-core repulsion = 9571.674894 eV Total energy + Delta-G solvation = -2114.521503 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.40441 -35.99071 -32.96092 -30.73689 -27.84706 -25.89673 -25.08347 -22.98996 -20.57487 -19.73406 -17.78464 -16.71190 -15.43513 -14.87904 -14.24355 -13.91332 -13.62452 -13.56585 -12.84170 -12.43402 -12.10825 -11.35849 -11.27308 -10.86767 -10.82291 -10.53186 -10.22495 -9.91329 -9.85532 -9.48561 -9.07234 -8.78469 -8.52096 -6.77106 -5.75127 -3.22264 0.91613 1.55671 1.96099 3.02455 3.36094 3.43358 3.45403 4.45949 4.51091 5.18110 5.37649 5.40405 5.50228 5.82283 5.96226 6.07814 6.26217 6.38095 6.67474 6.71551 6.85989 7.34839 7.70848 7.78435 7.85445 8.36652 9.20514 9.83434 10.32157 11.29427 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.054180 B = 0.007133 C = 0.006464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.673817 B = 3924.656936 C = 4330.687853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.600 5.600 3 C -0.258 4.258 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.904 3.096 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.159 3.841 12 C -0.071 4.071 13 C -0.177 4.177 14 C 0.007 3.993 15 N -0.469 5.469 16 C -0.007 4.007 17 S 0.110 5.890 18 H 0.032 0.968 19 H 0.041 0.959 20 H -0.001 1.001 21 H 0.252 0.748 22 H 0.048 0.952 23 H 0.039 0.961 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.173 0.827 27 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.434 -9.972 -5.058 12.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.322 5.322 3 C -0.388 4.388 4 H 0.087 0.913 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.734 3.266 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.030 3.970 12 C -0.114 4.114 13 C -0.299 4.299 14 C -0.143 4.143 15 N -0.182 5.182 16 C -0.305 4.305 17 S 0.361 5.639 18 H 0.051 0.949 19 H 0.060 0.940 20 H 0.017 0.983 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.058 0.942 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.190 0.810 27 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 7.029 -9.757 -4.970 13.012 hybrid contribution -0.505 0.731 -0.142 0.899 sum 6.525 -9.026 -5.112 12.254 Atomic orbital electron populations 1.20825 0.82505 0.95478 0.99623 1.43948 1.01965 1.00635 1.85629 1.19233 0.98301 0.85572 1.35669 0.91326 1.25038 0.97843 0.98602 0.98073 1.70084 1.19419 1.27170 1.38401 0.86187 0.78599 0.84230 0.77549 1.20247 1.21573 1.21669 1.20704 0.96440 0.88518 0.91291 1.21046 0.98331 0.89119 1.02911 1.26350 0.95169 1.01222 1.07198 1.21700 1.00675 0.86367 1.05542 1.66267 1.01009 1.36351 1.14579 1.28178 0.97481 0.97881 1.06919 1.84102 1.06230 1.05533 1.68052 0.94936 0.94013 0.98251 0.93735 0.93341 0.94232 0.90317 0.90554 0.81006 0.79059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.92 8.98 59.85 0.54 4.46 15 2 N -0.60 -15.01 2.92 -181.12 -0.53 -15.54 15 3 C -0.26 -7.05 9.65 -15.06 -0.15 -7.19 15 4 H 0.07 1.83 7.86 -52.49 -0.41 1.41 15 5 C 0.00 0.08 5.10 -17.43 -0.09 -0.01 15 6 N -0.91 -26.39 10.71 55.49 0.59 -25.80 15 7 Si 0.90 21.69 29.57 -169.99 -5.03 16.67 15 8 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 11 C 0.16 3.25 5.63 -4.04 -0.02 3.23 15 12 C -0.07 -1.22 6.07 -27.88 -0.17 -1.39 15 13 C -0.18 -2.71 5.85 -35.92 -0.21 -2.92 15 14 C 0.01 0.10 11.25 -19.19 -0.22 -0.11 15 15 N -0.47 -6.97 10.54 -15.75 -0.17 -7.14 15 16 C -0.01 -0.09 12.23 51.58 0.63 0.54 15 17 S 0.11 1.44 23.22 -107.50 -2.50 -1.06 15 18 H 0.03 0.86 7.34 -51.93 -0.38 0.48 15 19 H 0.04 1.09 7.34 -51.93 -0.38 0.71 15 20 H 0.00 -0.02 8.03 -51.93 -0.42 -0.44 15 21 H 0.25 7.10 8.31 -40.82 -0.34 6.76 15 22 H 0.05 1.01 8.04 -51.93 -0.42 0.59 15 23 H 0.04 0.77 8.07 -51.93 -0.42 0.35 15 24 H 0.08 1.33 8.14 -51.93 -0.42 0.91 15 25 H 0.08 1.38 8.14 -51.93 -0.42 0.96 15 26 H 0.17 2.30 8.06 -52.48 -0.42 1.87 15 27 H 0.19 1.66 8.06 -52.49 -0.42 1.24 15 LS Contribution 250.45 15.07 3.77 3.77 Total: -1.00 -30.07 250.45 -6.79 -36.86 By element: Atomic # 1 Polarization: -1.12 SS G_CDS: -3.25 Total: -4.37 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 0.32 Total: -3.39 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -0.10 Total: -48.48 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.67 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.50 Total: -1.06 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.07 -6.79 -36.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653305711.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.232 kcal (2) G-P(sol) polarization free energy of solvation -30.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds