Wall clock time and date at job start Sun Mar 29 2020 21:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00118 * 2 1 4 4 H 1.48500 * 109.46921 * 270.00027 * 3 2 1 5 5 H 1.48500 * 109.47163 * 29.99695 * 3 2 1 6 6 H 1.48494 * 109.47628 * 149.99891 * 3 2 1 7 7 C 1.37882 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00242 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99798 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47239 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47473 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.47378 * 179.97438 * 11 10 9 13 13 C 1.47194 * 110.99892 * 170.00283 * 12 11 10 14 14 C 1.52974 * 108.73029 * 54.36853 * 13 12 11 15 15 N 1.46006 * 110.04476 * 50.29424 * 14 13 12 16 16 C 1.33719 * 122.92313 * 341.83452 * 15 14 13 17 17 O 1.21285 * 118.62076 * 181.69151 * 16 15 14 18 18 C 1.46897 * 110.99926 * 292.89093 * 12 11 10 19 19 H 0.97001 * 120.00663 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.47585 * 59.99116 * 9 7 2 21 21 H 1.09000 * 109.46916 * 299.99278 * 9 7 2 22 22 H 1.09004 * 109.47108 * 59.99559 * 10 9 7 23 23 H 1.09004 * 109.47368 * 299.99660 * 10 9 7 24 24 H 1.09004 * 109.46862 * 59.99962 * 11 10 9 25 25 H 1.09000 * 109.47250 * 299.99985 * 11 10 9 26 26 H 1.09001 * 109.58922 * 174.14633 * 13 12 11 27 27 H 1.09002 * 109.58960 * 294.59494 * 13 12 11 28 28 H 1.09008 * 109.37454 * 170.46894 * 14 13 12 29 29 H 1.09005 * 109.37833 * 290.11709 * 14 13 12 30 30 H 0.97001 * 118.53924 * 161.82227 * 15 14 13 31 31 H 1.09009 * 109.38352 * 47.09030 * 18 12 11 32 32 H 1.09006 * 109.38792 * 166.77125 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1037 0.0006 13 6 1.7493 -7.3840 0.2397 14 6 0.6259 -7.5388 -0.7870 15 7 1.1400 -7.2961 -2.1318 16 6 2.2904 -6.6556 -2.3655 17 8 2.6283 -6.4692 -3.5153 18 6 3.1816 -6.1572 -1.2634 19 1 -0.4851 0.8400 -0.0004 20 1 0.6246 -2.5571 -0.8895 21 1 0.6242 -2.5567 0.8904 22 1 2.8720 -3.6043 0.8905 23 1 2.8719 -3.6044 -0.8895 24 1 0.8534 -5.0450 -0.8886 25 1 0.8540 -5.0446 0.8914 26 1 2.4589 -8.2043 0.1318 27 1 1.3290 -7.3912 1.2454 28 1 0.2219 -8.5498 -0.7313 29 1 -0.1658 -6.8223 -0.5677 30 1 0.6242 -7.6137 -2.8894 31 1 3.5424 -5.1593 -1.5130 32 1 4.0318 -6.8304 -1.1532 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042224152.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:47 Heat of formation + Delta-G solvation = -66.645454 kcal Electronic energy + Delta-G solvation = -14244.192967 eV Core-core repulsion = 11817.156983 eV Total energy + Delta-G solvation = -2427.035984 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.66997 -38.64374 -36.25557 -35.08301 -33.17053 -30.83551 -29.10668 -26.67258 -24.93542 -23.54220 -22.19024 -19.87939 -18.61989 -18.23306 -17.58978 -16.84969 -16.60577 -16.13207 -15.97116 -15.43421 -14.85922 -14.40437 -14.07813 -13.77919 -13.44577 -13.06853 -12.72343 -12.69133 -12.48435 -12.27702 -12.18111 -11.69029 -11.38074 -11.36906 -11.11194 -10.55584 -10.18663 -9.33791 -8.20993 -6.31670 1.39678 1.41042 1.45794 1.52290 2.16747 2.40695 2.89234 3.12382 3.52956 3.91590 3.99736 4.04673 4.27266 4.43854 4.49779 4.62470 4.69401 4.75869 4.94630 4.99364 5.06399 5.22336 5.51172 5.61084 5.74419 5.85008 5.89611 5.97416 6.18538 6.26157 6.85142 7.06569 7.37610 8.90893 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.046687 B = 0.006464 C = 0.006246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.598988 B = 4330.769887 C = 4481.929622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.095 4.095 11 C 0.061 3.939 12 N -0.525 5.525 13 C 0.033 3.967 14 C 0.068 3.932 15 N -0.715 5.715 16 C 0.485 3.515 17 O -0.606 6.606 18 C 0.037 3.963 19 H 0.264 0.736 20 H -0.017 1.017 21 H -0.001 1.001 22 H 0.061 0.939 23 H 0.041 0.959 24 H 0.022 0.978 25 H 0.087 0.913 26 H 0.104 0.896 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.066 0.934 30 H 0.402 0.598 31 H 0.099 0.901 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.966 -16.976 1.976 17.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.133 4.133 11 C -0.067 4.067 12 N -0.248 5.248 13 C -0.095 4.095 14 C -0.056 4.056 15 N -0.367 5.367 16 C 0.272 3.728 17 O -0.487 6.487 18 C -0.094 4.094 19 H 0.072 0.928 20 H 0.001 0.999 21 H 0.017 0.983 22 H 0.080 0.920 23 H 0.060 0.940 24 H 0.040 0.960 25 H 0.106 0.894 26 H 0.122 0.878 27 H 0.137 0.863 28 H 0.137 0.863 29 H 0.084 0.916 30 H 0.238 0.762 31 H 0.117 0.883 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.452 -16.627 2.009 16.927 hybrid contribution -0.814 0.894 -1.206 1.708 sum 1.638 -15.733 0.803 15.839 Atomic orbital electron populations 1.70083 1.07751 1.27768 1.51741 1.25973 0.95794 1.03348 0.94707 0.85465 0.78818 0.78498 0.78402 1.20081 1.20474 1.18588 1.21719 0.93572 0.92518 1.50469 0.92306 1.18944 0.94364 0.93054 0.94660 1.21447 0.98107 0.93006 1.00691 1.22159 0.93678 0.90179 1.00683 1.62601 1.27347 1.04162 1.30698 1.22820 0.95479 0.91078 1.00089 1.22367 0.98136 1.04233 0.80901 1.45642 1.22555 1.57541 1.10926 1.21682 0.83018 0.76817 0.91284 1.90719 1.74088 1.59141 1.24772 1.22530 0.97060 1.04425 0.85345 0.92762 0.99864 0.98302 0.92017 0.94011 0.95974 0.89439 0.87793 0.86253 0.86324 0.91592 0.76215 0.88314 0.84634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.96 45.06 29.54 68.60 2.03 47.08 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.54 -31.71 9.11 25.60 0.23 -31.48 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.46 4.97 29.85 0.15 1.61 16 10 C -0.09 -3.90 5.13 30.59 0.16 -3.75 16 11 C 0.06 1.94 4.02 86.30 0.35 2.28 16 12 N -0.53 -13.05 5.03 -900.90 -4.53 -17.58 16 13 C 0.03 0.52 6.03 86.24 0.52 1.04 16 14 C 0.07 1.06 6.46 86.46 0.56 1.61 16 15 N -0.72 -16.04 5.33 -466.10 -2.48 -18.53 16 16 C 0.49 14.55 7.06 87.68 0.62 15.16 16 17 O -0.61 -23.70 17.83 -3.05 -0.05 -23.75 16 18 C 0.04 1.00 5.76 85.42 0.49 1.49 16 19 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 20 H -0.02 -1.00 8.14 -2.39 -0.02 -1.01 16 21 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 22 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 23 H 0.04 1.76 6.36 -2.39 -0.02 1.74 16 24 H 0.02 0.76 6.23 -2.38 -0.01 0.75 16 25 H 0.09 2.61 8.08 -2.39 -0.02 2.59 16 26 H 0.10 1.28 8.08 -2.39 -0.02 1.26 16 27 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.07 1.16 7.10 -2.38 -0.02 1.15 16 30 H 0.40 8.23 8.84 -92.71 -0.82 7.41 16 31 H 0.10 3.10 6.05 -2.38 -0.01 3.08 16 32 H 0.14 2.84 8.14 -2.38 -0.02 2.82 16 Total: -1.00 -73.10 261.97 -0.93 -74.03 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 0.29 Total: 7.55 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 3.54 Total: -11.60 kcal Atomic # 7 Polarization: -86.58 SS G_CDS: -6.73 Total: -93.31 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.05 Total: -23.75 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -73.10 -0.93 -74.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042224152.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.381 kcal (2) G-P(sol) polarization free energy of solvation -73.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds