Wall clock time and date at job start Sun Mar 29 2020 21:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00418 * 2 1 4 4 H 1.48495 * 109.47123 * 270.00148 * 3 2 1 5 5 H 1.48497 * 109.46880 * 30.00157 * 3 2 1 6 6 H 1.48495 * 109.46945 * 149.99653 * 3 2 1 7 7 C 1.38815 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99898 * 201.46779 * 7 2 1 9 9 N 1.36935 * 120.00385 * 21.47639 * 7 2 1 10 10 C 1.46501 * 119.99625 * 17.09124 * 9 7 2 11 11 C 1.50697 * 109.47784 * 263.93593 * 10 9 7 12 12 N 1.34772 * 120.00592 * 180.02562 * 11 10 9 13 13 O 1.21284 * 119.99708 * 0.02562 * 11 10 9 14 14 C 1.46501 * 120.00572 * 197.10303 * 9 7 2 15 15 C 1.54270 * 110.02572 * 302.08791 * 14 9 7 16 16 C 1.54962 * 104.16438 * 95.75315 * 15 14 9 17 17 C 1.54894 * 102.77297 * 37.88434 * 16 15 14 18 18 C 1.53868 * 110.03242 * 59.29828 * 14 9 7 19 19 H 0.97000 * 119.99701 * 0.02562 * 1 2 3 20 20 H 1.09005 * 109.47411 * 23.94391 * 10 9 7 21 21 H 1.09008 * 109.47294 * 143.93628 * 10 9 7 22 22 H 0.97003 * 119.99792 * 359.97438 * 12 11 10 23 23 H 0.96994 * 120.00183 * 180.02562 * 12 11 10 24 24 H 1.08997 * 110.01831 * 180.70089 * 14 9 7 25 25 H 1.09004 * 110.48086 * 214.40154 * 15 14 9 26 26 H 1.09000 * 110.48797 * 337.04046 * 15 14 9 27 27 H 1.09001 * 110.71861 * 279.57745 * 16 15 14 28 28 H 1.08995 * 110.92412 * 156.28806 * 16 15 14 29 29 H 1.09004 * 110.48776 * 203.40492 * 17 16 15 30 30 H 1.08999 * 110.59765 * 80.81831 * 17 16 15 31 31 H 1.08994 * 110.03650 * 359.95922 * 18 14 9 32 32 H 1.09009 * 110.02729 * 121.38488 * 18 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0340 -1.2346 0.3429 9 7 1.3968 -2.3471 -0.4331 10 6 0.1732 -2.2641 -1.2344 11 6 -1.0271 -2.4173 -0.3361 12 7 -2.2691 -2.3742 -0.8576 13 8 -0.8753 -2.5793 0.8563 14 6 1.9640 -3.6551 -0.0956 15 6 3.4130 -3.7527 -0.6160 16 6 4.2820 -3.3643 0.6068 17 6 3.5210 -4.0152 1.7884 18 6 2.0326 -3.8214 1.4325 19 1 -0.4850 0.8401 -0.0004 20 1 0.1314 -1.2966 -1.7348 21 1 0.1725 -3.0591 -1.9802 22 1 -2.3905 -2.2442 -1.8111 23 1 -3.0416 -2.4724 -0.2793 24 1 1.3567 -4.4487 -0.5308 25 1 3.6361 -4.7711 -0.9344 26 1 3.5719 -3.0523 -1.4359 27 1 4.3221 -2.2812 0.7229 28 1 5.2860 -3.7794 0.5184 29 1 3.7593 -3.5063 2.7224 30 1 3.7608 -5.0760 1.8612 31 1 1.6445 -2.9288 1.9231 32 1 1.4584 -4.6958 1.7390 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042253631.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:19 Heat of formation + Delta-G solvation = -43.209770 kcal Electronic energy + Delta-G solvation = -15167.040264 eV Core-core repulsion = 12741.020528 eV Total energy + Delta-G solvation = -2426.019736 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.03999 -38.81330 -35.63661 -33.95832 -32.73435 -29.31126 -28.89494 -28.11580 -24.45010 -21.45579 -21.05073 -20.67670 -18.56667 -17.48512 -17.25203 -16.88286 -16.17300 -15.89179 -15.20075 -14.76555 -14.40566 -14.28723 -13.81013 -13.15433 -12.85280 -12.56486 -12.31791 -12.10317 -11.92019 -11.76846 -11.69645 -11.48119 -11.32304 -11.10459 -10.62254 -10.20443 -10.05626 -8.64451 -7.76860 -5.07479 1.49012 1.50800 1.57722 2.51302 2.62110 3.25849 3.39968 3.70251 4.00767 4.08044 4.33090 4.69096 4.72687 4.80103 4.90514 4.97537 5.04361 5.08937 5.20729 5.29934 5.31970 5.33056 5.51053 5.66057 5.83017 5.93116 6.42505 6.45905 7.03419 7.27459 7.96204 8.16826 8.41774 9.30699 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.021429 B = 0.017504 C = 0.011126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.301311 B = 1599.249097 C = 2516.095166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.060 4.060 3 Si 0.955 3.045 4 H -0.284 1.284 5 H -0.309 1.309 6 H -0.277 1.277 7 C -0.233 4.233 8 H 0.082 0.918 9 N -0.578 5.578 10 C 0.158 3.842 11 C 0.521 3.479 12 N -0.859 5.859 13 O -0.587 6.587 14 C 0.163 3.837 15 C -0.121 4.121 16 C -0.118 4.118 17 C -0.114 4.114 18 C -0.124 4.124 19 H 0.240 0.760 20 H 0.083 0.917 21 H 0.069 0.931 22 H 0.404 0.596 23 H 0.387 0.613 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.031 0.969 32 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.447 -7.287 -4.844 9.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.254 4.254 3 Si 0.786 3.214 4 H -0.211 1.211 5 H -0.236 1.236 6 H -0.202 1.202 7 C -0.363 4.363 8 H 0.100 0.900 9 N -0.297 5.297 10 C 0.028 3.972 11 C 0.306 3.694 12 N -0.424 5.424 13 O -0.466 6.466 14 C 0.057 3.943 15 C -0.160 4.160 16 C -0.156 4.156 17 C -0.151 4.151 18 C -0.163 4.163 19 H 0.049 0.951 20 H 0.101 0.899 21 H 0.086 0.914 22 H 0.233 0.767 23 H 0.216 0.784 24 H 0.073 0.927 25 H 0.100 0.900 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.050 0.950 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.697 -7.257 -4.115 8.767 hybrid contribution -0.646 1.439 0.263 1.600 sum 2.051 -5.817 -3.851 7.272 Atomic orbital electron populations 1.70105 1.05766 1.24387 1.56750 1.25450 0.95975 1.00600 1.03351 0.85416 0.77873 0.80755 0.77319 1.21090 1.23641 1.20225 1.19578 0.95100 0.85546 1.36086 0.90033 1.44229 1.25218 1.01593 1.58687 1.20647 0.84064 1.00971 0.91542 1.22143 0.85821 0.71745 0.89672 1.43791 1.07368 1.78615 1.12599 1.90509 1.86715 1.50824 1.18509 1.21205 0.94091 0.86251 0.92787 1.22692 0.94843 1.00881 0.97621 1.22500 0.98421 0.99728 0.94910 1.22276 0.94340 1.00665 0.97844 1.22458 0.96344 0.99152 0.98354 0.95075 0.89902 0.91355 0.76703 0.78436 0.92656 0.90034 0.92294 0.93409 0.90206 0.93183 0.90168 0.94998 0.93909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.26 9.27 21.65 0.20 -53.06 16 2 C -0.06 -3.30 4.87 84.86 0.41 -2.88 16 3 Si 0.96 45.58 29.61 68.60 2.03 47.61 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.31 -15.29 7.11 99.48 0.71 -14.59 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.23 -12.44 8.19 84.03 0.69 -11.75 16 8 H 0.08 4.30 5.09 -2.91 -0.01 4.28 16 9 N -0.58 -27.99 1.91 -678.31 -1.30 -29.29 16 10 C 0.16 7.15 5.32 85.63 0.46 7.61 16 11 C 0.52 24.41 6.30 87.66 0.55 24.96 16 12 N -0.86 -30.27 8.87 -173.54 -1.54 -31.81 16 13 O -0.59 -33.49 16.91 -3.04 -0.05 -33.54 16 14 C 0.16 6.74 3.42 45.71 0.16 6.89 16 15 C -0.12 -4.13 6.08 31.70 0.19 -3.94 16 16 C -0.12 -3.93 6.51 31.91 0.21 -3.72 16 17 C -0.11 -3.84 6.83 31.67 0.22 -3.63 16 18 C -0.12 -5.24 6.24 31.32 0.20 -5.05 16 19 H 0.24 13.83 8.31 -92.71 -0.77 13.06 16 20 H 0.08 4.05 6.39 -2.38 -0.02 4.04 16 21 H 0.07 2.55 8.06 -2.38 -0.02 2.54 16 22 H 0.40 11.15 8.83 -92.71 -0.82 10.33 16 23 H 0.39 12.70 8.93 -92.71 -0.83 11.87 16 24 H 0.06 2.15 7.90 -2.39 -0.02 2.13 16 25 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 26 H 0.06 2.15 7.97 -2.39 -0.02 2.13 16 27 H 0.05 1.84 5.89 -2.39 -0.01 1.83 16 28 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.03 1.68 7.34 -2.39 -0.02 1.67 16 32 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -68.80 257.08 1.91 -66.89 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: -0.51 Total: 24.71 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 3.08 Total: 8.49 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -2.64 Total: -114.16 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.05 Total: -33.54 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -68.80 1.91 -66.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042253631.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.684 kcal (2) G-P(sol) polarization free energy of solvation -68.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds