Wall clock time and date at job start Sun Mar 29 2020 22:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36937 * 120.00356 * 2 1 4 4 H 1.07999 * 119.99966 * 184.33881 * 3 2 1 5 5 C 1.38815 * 119.99984 * 4.33870 * 3 2 1 6 6 N 1.31618 * 119.99766 * 350.98730 * 5 3 2 7 7 Si 1.86797 * 120.00077 * 170.99152 * 5 3 2 8 8 H 1.48493 * 109.47249 * 94.98582 * 7 5 3 9 9 H 1.48502 * 109.47080 * 214.98524 * 7 5 3 10 10 H 1.48496 * 109.47007 * 334.98309 * 7 5 3 11 11 C 1.46508 * 119.99828 * 179.97438 * 2 1 3 12 12 H 1.08991 * 109.62995 * 275.95512 * 11 2 1 13 13 C 1.53061 * 109.79262 * 36.45800 * 11 2 1 14 14 C 1.51787 * 110.74868 * 34.88044 * 13 11 2 15 15 C 1.51785 * 113.81257 * 66.80803 * 14 13 11 16 16 C 1.52948 * 110.88152 * 293.00667 * 15 14 13 17 17 N 1.47193 * 108.67431 * 86.46210 * 16 15 14 18 18 C 1.33369 * 120.42792 * 288.02449 * 17 16 15 19 19 O 1.21280 * 119.89491 * 180.28705 * 18 17 16 20 20 H 1.08995 * 109.47110 * 178.38666 * 1 2 3 21 21 H 1.08995 * 109.47075 * 298.39646 * 1 2 3 22 22 H 1.09006 * 109.46886 * 58.39207 * 1 2 3 23 23 H 0.97001 * 119.99869 * 180.02562 * 6 5 3 24 24 H 1.09006 * 109.22049 * 155.20887 * 13 11 2 25 25 H 1.09003 * 109.22062 * 274.59257 * 13 11 2 26 26 H 1.08998 * 108.62063 * 187.92579 * 14 13 11 27 27 H 1.09003 * 108.61789 * 305.82903 * 14 13 11 28 28 H 1.09000 * 109.19589 * 53.35428 * 15 14 13 29 29 H 1.08999 * 109.19691 * 172.68911 * 15 14 13 30 30 H 1.08997 * 109.61453 * 326.69178 * 16 15 14 31 31 H 1.09007 * 109.58243 * 206.20596 * 16 15 14 32 32 H 0.97001 * 119.78910 * 108.29831 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2274 1.1871 -0.0708 5 6 1.4587 2.3864 0.0909 6 7 0.1458 2.3985 -0.0014 7 14 2.3921 3.9845 0.3443 8 1 2.6330 4.6308 -0.9707 9 1 1.5924 4.8939 1.2037 10 1 3.6929 3.6991 1.0014 11 6 2.1975 -1.2688 0.0006 12 1 2.2883 -1.6387 1.0218 13 6 1.4535 -2.2972 -0.8548 14 6 0.7874 -1.6274 -2.0429 15 6 1.7662 -1.0573 -3.0532 16 6 2.5442 0.1164 -2.4561 17 7 3.7205 -0.4107 -1.7455 18 6 3.5763 -1.0605 -0.5897 19 8 4.5526 -1.4863 -0.0097 20 1 -0.3633 -1.0272 -0.0289 21 1 -0.3633 0.4887 0.9040 22 1 -0.3633 0.5386 -0.8753 23 1 -0.3370 3.2375 0.0618 24 1 2.1611 -3.0444 -1.2142 25 1 0.6928 -2.7868 -0.2466 26 1 0.1553 -2.3593 -2.5457 27 1 0.1566 -0.8172 -1.6771 28 1 2.4672 -1.8366 -3.3522 29 1 1.2171 -0.7136 -3.9297 30 1 1.9079 0.6596 -1.7576 31 1 2.8682 0.7840 -3.2546 32 1 4.6067 -0.2812 -2.1181 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045059762.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:17 Heat of formation + Delta-G solvation = 21.755868 kcal Electronic energy + Delta-G solvation = -15674.396708 eV Core-core repulsion = 13251.194093 eV Total energy + Delta-G solvation = -2423.202615 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.91742 -36.70292 -34.33052 -33.14834 -31.16320 -29.06675 -26.92556 -25.04875 -23.39893 -21.59027 -19.93176 -18.82658 -16.95134 -16.34520 -15.90389 -14.84903 -14.35812 -13.70436 -13.58993 -13.12821 -13.02304 -12.81726 -12.09487 -12.05939 -11.50441 -11.17400 -10.99717 -10.75466 -10.47309 -10.28936 -10.20784 -9.97043 -9.87055 -9.41154 -8.95460 -8.53738 -8.10197 -6.90054 -5.80210 -3.22648 3.31337 3.40339 3.42778 3.48500 4.20958 4.40212 5.22358 5.30589 5.34798 5.45689 5.56722 5.77340 5.98216 6.05181 6.22910 6.27807 6.46954 6.58750 6.62094 6.67276 6.72502 6.97924 7.33210 7.52394 7.60974 7.73468 7.81714 8.12569 8.20488 9.06109 9.13129 9.71052 10.13555 11.17317 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.031862 B = 0.014818 C = 0.012994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.586183 B = 1889.128343 C = 2154.346107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.606 5.606 3 C -0.252 4.252 4 H 0.080 0.920 5 C 0.002 3.998 6 N -0.909 5.909 7 Si 0.905 3.095 8 H -0.287 1.287 9 H -0.288 1.288 10 H -0.280 1.280 11 C 0.163 3.837 12 H 0.056 0.944 13 C -0.119 4.119 14 C -0.142 4.142 15 C -0.125 4.125 16 C 0.062 3.938 17 N -0.707 5.707 18 C 0.531 3.469 19 O -0.584 6.584 20 H 0.004 0.996 21 H 0.037 0.963 22 H 0.057 0.943 23 H 0.253 0.747 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.042 0.958 27 H 0.108 0.892 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.172 0.828 31 H 0.056 0.944 32 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.430 -4.750 -5.534 7.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.335 5.335 3 C -0.380 4.380 4 H 0.098 0.902 5 C -0.195 4.195 6 N -0.556 5.556 7 Si 0.734 3.266 8 H -0.214 1.214 9 H -0.214 1.214 10 H -0.205 1.205 11 C 0.053 3.947 12 H 0.074 0.926 13 C -0.158 4.158 14 C -0.179 4.179 15 C -0.163 4.163 16 C -0.061 4.061 17 N -0.356 5.356 18 C 0.317 3.683 19 O -0.464 6.464 20 H 0.023 0.977 21 H 0.055 0.945 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.061 0.939 27 H 0.126 0.874 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.189 0.811 31 H 0.075 0.925 32 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -0.268 -4.851 -5.144 7.075 hybrid contribution 0.885 0.926 -0.129 1.287 sum 0.617 -3.925 -5.273 6.602 Atomic orbital electron populations 1.21169 0.81031 0.93786 1.01746 1.44157 1.02426 0.99497 1.87372 1.19222 0.91534 0.83353 1.43904 0.90200 1.24836 0.95699 0.97845 1.01165 1.70213 1.05208 1.25213 1.54954 0.86218 0.79044 0.83405 0.77907 1.21434 1.21422 1.20544 1.20795 0.88340 0.88666 0.96943 0.92619 1.21589 0.99436 0.97566 0.97247 1.21618 0.99229 1.01706 0.95342 1.21632 0.98350 0.98355 0.97969 1.23014 0.89019 0.95630 0.98439 1.45745 1.09995 1.56529 1.23282 1.20817 0.91700 0.75751 0.80022 1.90631 1.41487 1.52776 1.61553 0.97741 0.94493 0.92474 0.93607 0.92716 0.91691 0.93912 0.87449 0.93614 0.92098 0.81104 0.92516 0.78293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 3.69 6.62 59.85 0.40 4.09 16 2 N -0.61 -14.03 1.67 -174.36 -0.29 -14.32 16 3 C -0.25 -6.40 6.09 -15.06 -0.09 -6.49 16 4 H 0.08 2.10 6.06 -52.49 -0.32 1.78 16 5 C 0.00 0.05 5.42 -17.43 -0.09 -0.04 16 6 N -0.91 -24.00 9.48 55.49 0.53 -23.47 16 7 Si 0.90 21.09 29.56 -169.99 -5.03 16.07 16 8 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 9 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 C 0.16 3.45 3.37 -68.69 -0.23 3.22 16 12 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 13 C -0.12 -2.09 4.72 -27.32 -0.13 -2.21 16 14 C -0.14 -2.37 4.86 -27.96 -0.14 -2.50 16 15 C -0.12 -2.01 5.73 -27.37 -0.16 -2.17 16 16 C 0.06 1.14 5.96 -3.69 -0.02 1.12 16 17 N -0.71 -13.61 4.60 -59.92 -0.28 -13.88 16 18 C 0.53 11.68 5.23 -11.25 -0.06 11.62 16 19 O -0.58 -14.49 17.92 5.56 0.10 -14.39 16 20 H 0.00 0.08 5.74 -51.93 -0.30 -0.22 16 21 H 0.04 0.92 7.16 -51.93 -0.37 0.55 16 22 H 0.06 1.35 6.02 -51.93 -0.31 1.04 16 23 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 24 H 0.05 0.92 7.86 -51.93 -0.41 0.51 16 25 H 0.06 1.04 7.61 -51.93 -0.40 0.65 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.11 2.00 3.33 -51.93 -0.17 1.83 16 28 H 0.05 0.71 8.05 -51.93 -0.42 0.30 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.17 3.78 3.09 -51.93 -0.16 3.62 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.38 6.64 8.91 -40.82 -0.36 6.27 16 LS Contribution 237.25 15.07 3.58 3.58 Total: -1.00 -28.15 237.25 -5.96 -34.11 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -4.04 Total: 5.68 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -0.52 Total: 6.63 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: -0.04 Total: -51.67 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.10 Total: -14.39 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -28.15 -5.96 -34.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045059762.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.868 kcal (2) G-P(sol) polarization free energy of solvation -28.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds