Wall clock time and date at job start Sun Mar 29 2020 22:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36937 * 120.00356 * 2 1 4 4 H 1.07999 * 119.99966 * 184.33881 * 3 2 1 5 5 C 1.38815 * 119.99984 * 4.33870 * 3 2 1 6 6 N 1.31618 * 119.99766 * 350.98730 * 5 3 2 7 7 Si 1.86797 * 120.00077 * 170.99152 * 5 3 2 8 8 H 1.48493 * 109.47249 * 94.98582 * 7 5 3 9 9 H 1.48502 * 109.47080 * 214.98524 * 7 5 3 10 10 H 1.48496 * 109.47007 * 334.98309 * 7 5 3 11 11 C 1.46508 * 119.99828 * 179.97438 * 2 1 3 12 12 H 1.08991 * 109.62995 * 275.95512 * 11 2 1 13 13 C 1.53061 * 109.79262 * 36.45800 * 11 2 1 14 14 C 1.51787 * 110.74868 * 34.88044 * 13 11 2 15 15 C 1.51785 * 113.81257 * 66.80803 * 14 13 11 16 16 C 1.52948 * 110.88152 * 293.00667 * 15 14 13 17 17 N 1.47193 * 108.67431 * 86.46210 * 16 15 14 18 18 C 1.33369 * 120.42792 * 288.02449 * 17 16 15 19 19 O 1.21280 * 119.89491 * 180.28705 * 18 17 16 20 20 H 1.08995 * 109.47110 * 178.38666 * 1 2 3 21 21 H 1.08995 * 109.47075 * 298.39646 * 1 2 3 22 22 H 1.09006 * 109.46886 * 58.39207 * 1 2 3 23 23 H 0.97001 * 119.99869 * 180.02562 * 6 5 3 24 24 H 1.09006 * 109.22049 * 155.20887 * 13 11 2 25 25 H 1.09003 * 109.22062 * 274.59257 * 13 11 2 26 26 H 1.08998 * 108.62063 * 187.92579 * 14 13 11 27 27 H 1.09003 * 108.61789 * 305.82903 * 14 13 11 28 28 H 1.09000 * 109.19589 * 53.35428 * 15 14 13 29 29 H 1.08999 * 109.19691 * 172.68911 * 15 14 13 30 30 H 1.08997 * 109.61453 * 326.69178 * 16 15 14 31 31 H 1.09007 * 109.58243 * 206.20596 * 16 15 14 32 32 H 0.97001 * 119.78910 * 108.29831 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2274 1.1871 -0.0708 5 6 1.4587 2.3864 0.0909 6 7 0.1458 2.3985 -0.0014 7 14 2.3921 3.9845 0.3443 8 1 2.6330 4.6308 -0.9707 9 1 1.5924 4.8939 1.2037 10 1 3.6929 3.6991 1.0014 11 6 2.1975 -1.2688 0.0006 12 1 2.2883 -1.6387 1.0218 13 6 1.4535 -2.2972 -0.8548 14 6 0.7874 -1.6274 -2.0429 15 6 1.7662 -1.0573 -3.0532 16 6 2.5442 0.1164 -2.4561 17 7 3.7205 -0.4107 -1.7455 18 6 3.5763 -1.0605 -0.5897 19 8 4.5526 -1.4863 -0.0097 20 1 -0.3633 -1.0272 -0.0289 21 1 -0.3633 0.4887 0.9040 22 1 -0.3633 0.5386 -0.8753 23 1 -0.3370 3.2375 0.0618 24 1 2.1611 -3.0444 -1.2142 25 1 0.6928 -2.7868 -0.2466 26 1 0.1553 -2.3593 -2.5457 27 1 0.1566 -0.8172 -1.6771 28 1 2.4672 -1.8366 -3.3522 29 1 1.2171 -0.7136 -3.9297 30 1 1.9079 0.6596 -1.7576 31 1 2.8682 0.7840 -3.2546 32 1 4.6067 -0.2812 -2.1181 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045059762.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:16 Heat of formation + Delta-G solvation = 3.261314 kcal Electronic energy + Delta-G solvation = -15675.198692 eV Core-core repulsion = 13251.194093 eV Total energy + Delta-G solvation = -2424.004599 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.57151 -38.43676 -36.01235 -34.78066 -32.87042 -30.75237 -28.66406 -26.77801 -24.91909 -23.38689 -21.39007 -20.47739 -18.74877 -18.01358 -17.66004 -16.54268 -16.04071 -15.40254 -15.30616 -14.69926 -14.64035 -14.46253 -13.76277 -13.65004 -13.13048 -12.87167 -12.71137 -12.51552 -12.26165 -12.03723 -11.79415 -11.73092 -11.39979 -10.89341 -10.69158 -10.39953 -9.75137 -8.75176 -7.76496 -5.19217 1.44426 1.49796 1.56198 1.74168 2.48072 2.65659 3.31067 3.61240 3.76581 4.04570 4.20181 4.27049 4.54348 4.58858 4.79634 4.93899 4.98227 5.04396 5.25978 5.31282 5.33684 5.48814 5.59669 5.72803 5.85948 5.95376 6.15142 6.30157 6.48785 7.16876 7.40754 7.83195 8.20895 9.18763 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.031862 B = 0.014818 C = 0.012994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.586183 B = 1889.128343 C = 2154.346107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.609 5.609 3 C -0.246 4.246 4 H 0.067 0.933 5 C -0.038 4.038 6 N -0.925 5.925 7 Si 0.953 3.047 8 H -0.280 1.280 9 H -0.293 1.293 10 H -0.288 1.288 11 C 0.156 3.844 12 H 0.041 0.959 13 C -0.112 4.112 14 C -0.141 4.141 15 C -0.119 4.119 16 C 0.058 3.942 17 N -0.695 5.695 18 C 0.524 3.476 19 O -0.620 6.620 20 H 0.035 0.965 21 H 0.003 0.997 22 H 0.045 0.955 23 H 0.248 0.752 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.140 0.860 31 H 0.076 0.924 32 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.609 -5.491 -6.909 8.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.337 5.337 3 C -0.375 4.375 4 H 0.085 0.915 5 C -0.234 4.234 6 N -0.573 5.573 7 Si 0.782 3.218 8 H -0.206 1.206 9 H -0.220 1.220 10 H -0.214 1.214 11 C 0.046 3.954 12 H 0.059 0.941 13 C -0.151 4.151 14 C -0.178 4.178 15 C -0.158 4.158 16 C -0.064 4.064 17 N -0.343 5.343 18 C 0.311 3.689 19 O -0.503 6.503 20 H 0.053 0.947 21 H 0.021 0.979 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.083 0.917 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.157 0.843 31 H 0.095 0.905 32 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -0.451 -5.590 -6.553 8.625 hybrid contribution 0.973 1.133 0.286 1.520 sum 0.522 -4.457 -6.267 7.708 Atomic orbital electron populations 1.20907 0.80514 0.95005 0.99449 1.44213 1.02748 0.99619 1.87144 1.19188 0.91016 0.84353 1.42916 0.91473 1.25309 0.96356 0.99757 1.01940 1.70348 1.05793 1.25180 1.56000 0.85471 0.77517 0.81031 0.77746 1.20634 1.21993 1.21423 1.20887 0.88570 0.88810 0.97099 0.94143 1.21551 0.99729 0.96537 0.97267 1.21576 0.99282 1.01705 0.95221 1.21581 0.98317 0.97489 0.98367 1.22968 0.88411 0.96944 0.98116 1.45712 1.11047 1.55065 1.22442 1.20953 0.91529 0.75848 0.80544 1.90609 1.42453 1.54561 1.62709 0.94662 0.97881 0.93716 0.94131 0.91689 0.89991 0.90961 0.89441 0.92566 0.89942 0.84256 0.90539 0.77142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.11 6.62 127.77 0.85 8.95 16 2 N -0.61 -27.86 1.67 -705.56 -1.18 -29.04 16 3 C -0.25 -12.45 6.09 84.03 0.51 -11.94 16 4 H 0.07 3.54 6.06 -2.91 -0.02 3.52 16 5 C -0.04 -1.98 5.42 84.86 0.46 -1.52 16 6 N -0.93 -49.05 9.48 21.65 0.21 -48.84 16 7 Si 0.95 43.40 29.56 68.60 2.03 45.43 16 8 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 9 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 10 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 11 C 0.16 6.46 3.37 44.50 0.15 6.61 16 12 H 0.04 1.81 8.13 -2.39 -0.02 1.79 16 13 C -0.11 -3.61 4.72 30.22 0.14 -3.46 16 14 C -0.14 -4.22 4.86 29.80 0.14 -4.07 16 15 C -0.12 -3.44 5.73 30.18 0.17 -3.26 16 16 C 0.06 2.02 5.96 86.23 0.51 2.54 16 17 N -0.69 -25.66 4.60 -462.67 -2.13 -27.79 16 18 C 0.52 22.64 5.23 88.11 0.46 23.11 16 19 O -0.62 -30.63 17.92 -3.03 -0.05 -30.68 16 20 H 0.04 1.31 5.74 -2.39 -0.01 1.29 16 21 H 0.00 0.14 7.16 -2.39 -0.02 0.12 16 22 H 0.04 2.09 6.02 -2.38 -0.01 2.08 16 23 H 0.25 12.99 8.31 -92.71 -0.77 12.22 16 24 H 0.06 1.98 7.86 -2.38 -0.02 1.96 16 25 H 0.08 2.36 7.61 -2.39 -0.02 2.34 16 26 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.09 3.03 3.33 -2.39 -0.01 3.03 16 28 H 0.06 1.53 8.05 -2.39 -0.02 1.51 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.14 5.98 3.09 -2.39 -0.01 5.97 16 31 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 32 H 0.39 12.99 8.91 -92.71 -0.83 12.16 16 Total: -1.00 -59.58 237.25 2.59 -56.99 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.31 Total: 16.98 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 3.40 Total: 16.95 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -3.10 Total: -105.66 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.05 Total: -30.68 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -59.58 2.59 -56.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045059762.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.249 kcal (2) G-P(sol) polarization free energy of solvation -59.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds