Wall clock time and date at job start Sun Mar 29 2020 21:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99980 * 2 1 4 4 H 1.48504 * 109.46731 * 269.99669 * 3 2 1 5 5 H 1.48505 * 109.47080 * 29.99179 * 3 2 1 6 6 H 1.48494 * 109.47349 * 149.99319 * 3 2 1 7 7 C 1.37873 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00161 * 179.72252 * 7 2 1 9 9 C 1.50701 * 119.99724 * 0.02562 * 7 2 1 10 10 N 1.46910 * 109.46799 * 179.97438 * 9 7 2 11 11 C 1.46848 * 110.99891 * 288.50079 * 10 9 7 12 12 C 1.53034 * 109.52222 * 174.16070 * 11 10 9 13 13 C 1.53123 * 109.27616 * 59.17988 * 12 11 10 14 14 C 1.53121 * 109.16184 * 302.34218 * 13 12 11 15 15 C 1.46848 * 110.99717 * 164.29133 * 10 9 7 16 16 H 1.08996 * 109.46378 * 65.82615 * 15 10 9 17 17 C 1.50703 * 109.46274 * 305.85529 * 15 10 9 18 18 N 1.34774 * 120.00205 * 151.12262 * 17 15 10 19 19 O 1.21282 * 120.00111 * 331.11791 * 17 15 10 20 20 H 0.97003 * 119.99939 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47238 * 299.99050 * 9 7 2 22 22 H 1.08995 * 109.48017 * 59.99537 * 9 7 2 23 23 H 1.08998 * 109.46062 * 294.17848 * 11 10 9 24 24 H 1.08999 * 109.46067 * 54.14724 * 11 10 9 25 25 H 1.08997 * 109.50271 * 299.24175 * 12 11 10 26 26 H 1.09000 * 109.50347 * 179.11458 * 12 11 10 27 27 H 1.09004 * 109.52195 * 182.44205 * 13 12 11 28 28 H 1.09003 * 109.57742 * 62.28302 * 13 12 11 29 29 H 1.08999 * 109.50890 * 297.71864 * 14 13 12 30 30 H 1.08998 * 109.53512 * 177.61466 * 14 13 12 31 31 H 0.97006 * 119.99362 * 0.02562 * 18 17 15 32 32 H 0.96996 * 120.00538 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 -0.0040 9 6 1.2510 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.8783 -3.7330 -1.2996 12 6 3.9648 -4.8076 -1.2181 13 6 3.3259 -6.1441 -0.8306 14 6 2.5912 -5.9820 0.5031 15 6 1.5445 -4.8733 0.3717 16 1 0.8224 -5.1450 -0.3982 17 6 0.8323 -4.6966 1.6880 18 7 -0.2685 -5.4246 1.9617 19 8 1.2496 -3.8995 2.5012 20 1 -0.4850 0.8401 -0.0004 21 1 0.6241 -2.5567 0.8904 22 1 0.6246 -2.5571 -0.8895 23 1 2.1499 -4.0100 -2.0616 24 1 3.3319 -2.7770 -1.5613 25 1 4.7010 -4.5245 -0.4659 26 1 4.4533 -4.9054 -2.1876 27 1 4.1018 -6.9029 -0.7291 28 1 2.6181 -6.4478 -1.6019 29 1 3.3058 -5.7173 1.2824 30 1 2.0985 -6.9186 0.7639 31 1 -0.6020 -6.0625 1.3114 32 1 -0.7267 -5.3112 2.8090 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048582780.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:04 Heat of formation + Delta-G solvation = -72.388750 kcal Electronic energy + Delta-G solvation = -14770.082189 eV Core-core repulsion = 12342.797157 eV Total energy + Delta-G solvation = -2427.285032 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.12591 -38.71619 -35.50128 -34.58085 -33.66432 -31.84478 -28.99884 -25.83078 -24.86635 -23.11084 -21.53730 -20.49735 -18.58880 -18.22979 -17.73892 -16.80019 -16.07488 -15.86761 -15.41166 -15.06410 -15.06044 -14.18482 -14.07868 -13.92176 -13.41536 -13.17050 -12.67777 -12.59866 -12.28593 -12.06880 -11.75747 -11.60629 -11.48103 -11.03350 -10.67707 -10.60015 -10.49436 -8.98299 -8.20249 -6.28859 1.36363 1.39909 1.51441 1.72273 2.39107 2.57572 3.11702 3.28439 3.89894 3.98655 4.11510 4.21294 4.33786 4.42235 4.61857 4.86274 4.90275 4.98359 5.08379 5.17548 5.21541 5.28684 5.37386 5.53804 5.64611 5.96817 6.07011 6.38701 6.43774 6.70996 6.85174 7.38874 7.47705 8.90937 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.031252 B = 0.010634 C = 0.008598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.733420 B = 2632.494380 C = 3255.783973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.517 4.517 8 H 0.057 0.943 9 C 0.207 3.793 10 N -0.532 5.532 11 C 0.063 3.937 12 C -0.113 4.113 13 C -0.109 4.109 14 C -0.098 4.098 15 C 0.063 3.937 16 H 0.062 0.938 17 C 0.513 3.487 18 N -0.838 5.838 19 O -0.573 6.573 20 H 0.263 0.737 21 H 0.008 0.992 22 H -0.040 1.040 23 H 0.023 0.977 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.416 0.584 32 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.724 -15.179 -2.574 15.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.555 4.555 8 H 0.075 0.925 9 C 0.081 3.919 10 N -0.258 5.258 11 C -0.065 4.065 12 C -0.151 4.151 13 C -0.146 4.146 14 C -0.136 4.136 15 C -0.049 4.049 16 H 0.080 0.920 17 C 0.298 3.702 18 N -0.403 5.403 19 O -0.450 6.450 20 H 0.072 0.928 21 H 0.026 0.974 22 H -0.023 1.023 23 H 0.042 0.958 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.106 0.894 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.117 0.883 31 H 0.247 0.753 32 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 3.340 -14.426 -1.831 14.920 hybrid contribution -1.098 0.929 -0.345 1.479 sum 2.242 -13.496 -2.176 13.853 Atomic orbital electron populations 1.70089 1.07676 1.27711 1.52261 1.25935 0.95856 1.03245 0.94976 0.85375 0.78405 0.78160 0.78636 1.19112 1.20672 1.19366 1.21418 0.93396 0.91343 1.49379 0.92503 1.19416 0.90177 0.89127 0.93166 1.61767 1.31249 1.02276 1.30524 1.22046 0.96375 0.99804 0.88260 1.21631 0.96898 0.94239 1.02296 1.21559 1.00254 0.96980 0.95856 1.21557 0.96719 0.95795 0.99541 1.21751 0.96757 0.93237 0.93127 0.92004 1.20913 0.80980 0.79197 0.89127 1.43643 1.29132 1.43984 1.23589 1.90747 1.67163 1.36471 1.50642 0.92817 0.97421 1.02281 0.95839 0.92426 0.92391 0.89362 0.88842 0.90737 0.92539 0.88257 0.75256 0.76342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.68 13.29 21.45 0.28 -59.39 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.97 47.31 29.54 68.60 2.03 49.33 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.52 -31.87 8.51 25.60 0.22 -31.65 16 8 H 0.06 3.47 7.50 -2.91 -0.02 3.45 16 9 C 0.21 11.93 4.36 85.56 0.37 12.30 16 10 N -0.53 -24.54 4.20 -880.03 -3.70 -28.23 16 11 C 0.06 2.45 5.30 86.32 0.46 2.90 16 12 C -0.11 -3.17 6.09 30.65 0.19 -2.98 16 13 C -0.11 -2.40 6.00 30.68 0.18 -2.21 16 14 C -0.10 -2.59 5.36 30.65 0.16 -2.43 16 15 C 0.06 2.28 2.23 44.19 0.10 2.37 16 16 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 17 C 0.51 20.03 5.97 87.66 0.52 20.56 16 18 N -0.84 -21.99 8.87 -173.53 -1.54 -23.53 16 19 O -0.57 -29.52 16.20 -3.04 -0.05 -29.56 16 20 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 21 H 0.01 0.49 5.68 -2.39 -0.01 0.48 16 22 H -0.04 -2.45 8.06 -2.39 -0.02 -2.47 16 23 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.06 2.52 7.12 -2.39 -0.02 2.50 16 25 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.42 7.34 8.83 -92.70 -0.82 6.52 16 32 H 0.41 9.69 8.93 -92.71 -0.83 8.86 16 Total: -1.00 -80.36 262.27 -0.83 -81.19 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -0.52 Total: 11.06 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 2.67 Total: -0.86 kcal Atomic # 7 Polarization: -106.20 SS G_CDS: -4.95 Total: -111.15 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.05 Total: -29.56 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.33 kcal Total: -80.36 -0.83 -81.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048582780.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.798 kcal (2) G-P(sol) polarization free energy of solvation -80.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds