Wall clock time and date at job start Sun Mar 29 2020 22:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00011 * 2 1 4 4 H 1.48507 * 109.47340 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47127 * 300.00100 * 3 2 1 6 6 H 1.48501 * 109.47230 * 60.00047 * 3 2 1 7 7 C 1.37879 * 120.00396 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00668 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99644 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47076 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46966 * 180.02562 * 10 9 7 12 12 O 1.42896 * 109.47357 * 180.02562 * 11 10 9 13 13 C 1.42896 * 114.00446 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.46906 * 89.99887 * 13 12 11 15 15 C 1.52999 * 109.47317 * 179.97438 * 14 13 12 16 16 C 1.53005 * 109.47159 * 300.00546 * 15 14 13 17 17 C 1.52997 * 109.47452 * 59.99536 * 16 15 14 18 18 C 1.53000 * 109.47231 * 209.99746 * 13 12 11 19 19 H 0.97002 * 119.99628 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.47068 * 60.00085 * 9 7 2 21 21 H 1.08996 * 109.47215 * 300.00396 * 9 7 2 22 22 H 1.08997 * 109.46932 * 60.00024 * 10 9 7 23 23 H 1.09000 * 109.47185 * 299.99987 * 10 9 7 24 24 H 1.08999 * 109.47594 * 59.99656 * 11 10 9 25 25 H 1.09000 * 109.47045 * 299.99934 * 11 10 9 26 26 H 1.09002 * 109.46984 * 330.00066 * 13 12 11 27 27 H 1.08996 * 109.47853 * 300.00254 * 14 13 12 28 28 H 1.09002 * 109.47153 * 60.00282 * 14 13 12 29 29 H 1.09000 * 109.47486 * 180.02562 * 15 14 13 30 30 H 1.09002 * 109.46716 * 60.00091 * 15 14 13 31 31 H 1.09002 * 109.46935 * 299.99411 * 16 15 14 32 32 H 1.09001 * 109.46812 * 179.97438 * 16 15 14 33 33 H 1.08993 * 109.47194 * 179.97438 * 17 16 15 34 34 H 1.09002 * 109.46695 * 59.99734 * 17 16 15 35 35 H 1.08992 * 109.47399 * 300.00058 * 18 13 12 36 36 H 1.09004 * 109.46724 * 60.00544 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 1.4804 -4.9871 -0.0025 12 8 2.4089 -6.0732 -0.0031 13 6 1.7944 -7.3633 -0.0031 14 6 1.5745 -7.8234 -1.4456 15 6 0.9171 -9.2049 -1.4458 16 6 1.8264 -10.2025 -0.7252 17 6 2.0463 -9.7424 0.7173 18 6 2.7032 -8.3612 0.7175 19 1 -0.4850 0.8401 0.0004 20 1 0.6241 -2.5567 -0.8904 21 1 0.6248 -2.5571 0.8896 22 1 2.8727 -3.6047 0.8877 23 1 2.8713 -3.6039 -0.8923 24 1 0.8532 -5.0442 -0.8922 25 1 0.8541 -5.0454 0.8878 26 1 0.8348 -7.3087 0.5111 27 1 0.9271 -7.1126 -1.9591 28 1 2.5341 -7.8780 -1.9598 29 1 0.7609 -9.5329 -2.4735 30 1 -0.0424 -9.1507 -0.9315 31 1 2.7859 -10.2567 -1.2396 32 1 1.3578 -11.1866 -0.7250 33 1 2.6936 -10.4533 1.2307 34 1 1.0867 -9.6882 1.2315 35 1 3.6626 -8.4158 0.2033 36 1 2.8597 -8.0334 1.7452 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049579508.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:38 Heat of formation + Delta-G solvation = -93.437271 kcal Electronic energy + Delta-G solvation = -13994.394720 eV Core-core repulsion = 11669.737300 eV Total energy + Delta-G solvation = -2324.657421 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.05267 -36.45353 -33.77733 -31.58366 -30.84869 -29.47758 -26.48878 -23.13314 -22.58301 -22.00750 -20.33222 -19.66039 -16.62985 -16.15490 -15.42170 -15.10321 -14.48640 -14.39759 -14.13763 -13.37685 -13.20071 -12.76165 -12.29810 -12.18976 -11.80655 -11.61969 -11.20411 -11.08706 -10.91266 -10.74702 -10.56878 -10.49996 -10.33630 -10.18624 -9.75723 -9.40117 -9.06234 -9.02810 -8.34017 -5.99113 -4.01106 3.32809 3.39972 3.45020 3.96875 4.48478 4.64516 4.67987 4.88767 5.14880 5.18597 5.31394 5.36983 5.41562 5.43451 5.52668 5.69125 5.78092 5.84173 5.91110 5.94470 6.02151 6.08594 6.15137 6.25794 6.29693 6.34662 6.73337 6.78979 7.13152 7.65925 7.72094 7.81435 8.00877 8.44196 9.05881 9.62930 11.12533 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.081097 B = 0.004563 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.180743 B = 6134.423900 C = 6260.152802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.023 3.977 10 C -0.108 4.108 11 C 0.063 3.937 12 O -0.386 6.386 13 C 0.089 3.911 14 C -0.142 4.142 15 C -0.117 4.117 16 C -0.121 4.121 17 C -0.117 4.117 18 C -0.116 4.116 19 H 0.260 0.740 20 H 0.017 0.983 21 H 0.017 0.983 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.053 -18.687 -0.601 18.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.075 0.925 9 C -0.015 4.015 10 C -0.145 4.145 11 C -0.013 4.013 12 O -0.306 6.306 13 C 0.031 3.969 14 C -0.180 4.180 15 C -0.155 4.155 16 C -0.159 4.159 17 C -0.154 4.154 18 C -0.154 4.154 19 H 0.069 0.931 20 H 0.035 0.965 21 H 0.035 0.965 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.104 -18.538 -0.601 18.667 hybrid contribution 0.042 0.962 -0.047 0.964 sum 2.146 -17.576 -0.647 17.718 Atomic orbital electron populations 1.69979 1.06080 1.26499 1.51072 1.25030 0.94864 0.99314 0.95322 0.86514 0.80160 0.83656 0.77553 1.19674 1.21009 1.21002 1.21273 0.93182 0.90867 1.50321 0.92469 1.19059 0.93949 0.91140 0.97303 1.21646 0.99616 0.91833 1.01430 1.22799 0.92177 0.87079 0.99251 1.87918 1.34380 1.13302 1.94991 1.22006 0.95919 0.84138 0.94866 1.22046 1.01572 0.96564 0.97820 1.21502 0.98764 0.94800 1.00425 1.21571 1.00055 0.98329 0.95918 1.21497 1.00885 0.96218 0.96815 1.21573 0.99266 0.93651 1.00910 0.93061 0.96509 0.96500 0.92644 0.92652 0.93986 0.93983 0.92646 0.91698 0.91268 0.91892 0.92021 0.91884 0.92123 0.91681 0.91955 0.91265 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.95 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.11 -2.39 5.52 -26.73 -0.15 -2.54 16 11 C 0.06 1.19 5.75 37.16 0.21 1.40 16 12 O -0.39 -6.85 9.99 -35.23 -0.35 -7.20 16 13 C 0.09 1.23 2.61 -26.73 -0.07 1.16 16 14 C -0.14 -1.76 5.54 -26.73 -0.15 -1.90 16 15 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 16 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 17 C -0.12 -1.08 5.92 -26.76 -0.16 -1.23 16 18 C -0.12 -1.36 5.57 -26.76 -0.15 -1.51 16 19 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 20 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 21 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 23 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.04 0.77 7.87 -51.93 -0.41 0.36 16 25 H 0.04 0.77 8.08 -51.93 -0.42 0.35 16 26 H 0.06 0.75 7.79 -51.93 -0.40 0.35 16 27 H 0.06 0.85 7.87 -51.93 -0.41 0.44 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 289.94 15.07 4.37 4.37 Total: -1.00 -30.43 289.94 -8.27 -38.71 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -6.68 Total: -5.71 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -1.33 Total: -20.55 kcal Atomic # 7 Polarization: -27.31 SS G_CDS: 0.74 Total: -26.57 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.35 Total: -7.20 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.43 -8.27 -38.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579508.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.731 kcal (2) G-P(sol) polarization free energy of solvation -30.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds