Wall clock time and date at job start Sun Mar 29 2020 22:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00011 * 2 1 4 4 H 1.48507 * 109.47340 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47127 * 300.00100 * 3 2 1 6 6 H 1.48501 * 109.47230 * 60.00047 * 3 2 1 7 7 C 1.37879 * 120.00396 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00668 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99644 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47076 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46966 * 180.02562 * 10 9 7 12 12 O 1.42896 * 109.47357 * 180.02562 * 11 10 9 13 13 C 1.42896 * 114.00446 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.46906 * 89.99887 * 13 12 11 15 15 C 1.52999 * 109.47317 * 179.97438 * 14 13 12 16 16 C 1.53005 * 109.47159 * 300.00546 * 15 14 13 17 17 C 1.52997 * 109.47452 * 59.99536 * 16 15 14 18 18 C 1.53000 * 109.47231 * 209.99746 * 13 12 11 19 19 H 0.97002 * 119.99628 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.47068 * 60.00085 * 9 7 2 21 21 H 1.08996 * 109.47215 * 300.00396 * 9 7 2 22 22 H 1.08997 * 109.46932 * 60.00024 * 10 9 7 23 23 H 1.09000 * 109.47185 * 299.99987 * 10 9 7 24 24 H 1.08999 * 109.47594 * 59.99656 * 11 10 9 25 25 H 1.09000 * 109.47045 * 299.99934 * 11 10 9 26 26 H 1.09002 * 109.46984 * 330.00066 * 13 12 11 27 27 H 1.08996 * 109.47853 * 300.00254 * 14 13 12 28 28 H 1.09002 * 109.47153 * 60.00282 * 14 13 12 29 29 H 1.09000 * 109.47486 * 180.02562 * 15 14 13 30 30 H 1.09002 * 109.46716 * 60.00091 * 15 14 13 31 31 H 1.09002 * 109.46935 * 299.99411 * 16 15 14 32 32 H 1.09001 * 109.46812 * 179.97438 * 16 15 14 33 33 H 1.08993 * 109.47194 * 179.97438 * 17 16 15 34 34 H 1.09002 * 109.46695 * 59.99734 * 17 16 15 35 35 H 1.08992 * 109.47399 * 300.00058 * 18 13 12 36 36 H 1.09004 * 109.46724 * 60.00544 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 1.4804 -4.9871 -0.0025 12 8 2.4089 -6.0732 -0.0031 13 6 1.7944 -7.3633 -0.0031 14 6 1.5745 -7.8234 -1.4456 15 6 0.9171 -9.2049 -1.4458 16 6 1.8264 -10.2025 -0.7252 17 6 2.0463 -9.7424 0.7173 18 6 2.7032 -8.3612 0.7175 19 1 -0.4850 0.8401 0.0004 20 1 0.6241 -2.5567 -0.8904 21 1 0.6248 -2.5571 0.8896 22 1 2.8727 -3.6047 0.8877 23 1 2.8713 -3.6039 -0.8923 24 1 0.8532 -5.0442 -0.8922 25 1 0.8541 -5.0454 0.8878 26 1 0.8348 -7.3087 0.5111 27 1 0.9271 -7.1126 -1.9591 28 1 2.5341 -7.8780 -1.9598 29 1 0.7609 -9.5329 -2.4735 30 1 -0.0424 -9.1507 -0.9315 31 1 2.7859 -10.2567 -1.2396 32 1 1.3578 -11.1866 -0.7250 33 1 2.6936 -10.4533 1.2307 34 1 1.0867 -9.6882 1.2315 35 1 3.6626 -8.4158 0.2033 36 1 2.8597 -8.0334 1.7452 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049579508.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:38 Heat of formation + Delta-G solvation = -110.234752 kcal Electronic energy + Delta-G solvation = -13995.123114 eV Core-core repulsion = 11669.737300 eV Total energy + Delta-G solvation = -2325.385814 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.14624 -37.66873 -35.77824 -33.53629 -31.70985 -30.59870 -28.40249 -24.96355 -23.51333 -23.03437 -22.08761 -20.67163 -18.59155 -17.61599 -16.78604 -16.49906 -16.33393 -15.35964 -15.19231 -14.69553 -14.42862 -14.21642 -13.89160 -13.48475 -13.23894 -13.09702 -12.78863 -12.51146 -12.27107 -12.06511 -11.95914 -11.74891 -11.60758 -11.43365 -11.32478 -11.23121 -11.09892 -10.58044 -10.31103 -8.22505 -6.33769 1.40214 1.40504 1.54489 2.39444 2.72132 3.10884 3.76986 3.81205 4.05692 4.12901 4.18805 4.30540 4.32712 4.39632 4.56301 4.56749 4.59195 4.68950 4.84483 4.89327 4.97917 5.10631 5.12284 5.15159 5.21819 5.25866 5.31397 5.39774 5.47491 5.51563 5.67419 5.80677 6.19012 6.37856 6.81918 7.35601 8.89891 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.081097 B = 0.004563 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.180743 B = 6134.423900 C = 6260.152802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.096 4.096 11 C 0.075 3.925 12 O -0.402 6.402 13 C 0.079 3.921 14 C -0.141 4.141 15 C -0.114 4.114 16 C -0.120 4.120 17 C -0.112 4.112 18 C -0.114 4.114 19 H 0.265 0.735 20 H -0.004 1.004 21 H -0.003 1.003 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.689 -19.563 -0.573 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.134 4.134 11 C -0.001 4.001 12 O -0.322 6.322 13 C 0.021 3.979 14 C -0.179 4.179 15 C -0.152 4.152 16 C -0.157 4.157 17 C -0.150 4.150 18 C -0.152 4.152 19 H 0.074 0.926 20 H 0.015 0.985 21 H 0.015 0.985 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.745 -19.437 -0.573 19.638 hybrid contribution -0.175 1.190 -0.056 1.204 sum 2.570 -18.247 -0.629 18.438 Atomic orbital electron populations 1.70097 1.07782 1.27862 1.51536 1.25990 0.95824 1.03407 0.94516 0.85351 0.78978 0.78492 0.77937 1.18722 1.20158 1.20128 1.21682 0.93574 0.92254 1.50846 0.92272 1.18935 0.94232 0.92567 0.95272 1.21398 0.98605 0.92229 1.01177 1.22477 0.91715 0.86304 0.99636 1.87873 1.34695 1.14473 1.95197 1.22339 0.96478 0.82741 0.96305 1.22029 1.01357 0.98026 0.96474 1.21505 0.98864 0.93308 1.01499 1.21581 1.00018 0.98840 0.95258 1.21501 1.01196 0.94749 0.97537 1.21595 0.98893 0.94546 1.00175 0.92623 0.98530 0.98476 0.92782 0.92874 0.93683 0.93554 0.92418 0.92938 0.91769 0.90739 0.91667 0.91814 0.90154 0.89986 0.91524 0.91633 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 2 C 0.00 0.02 5.46 84.66 0.46 0.49 16 3 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 4 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.55 -32.10 9.11 25.60 0.23 -31.86 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.03 1.48 4.97 29.85 0.15 1.63 16 10 C -0.10 -4.34 5.52 30.59 0.17 -4.17 16 11 C 0.08 2.85 5.75 71.98 0.41 3.27 16 12 O -0.40 -14.18 9.99 -148.98 -1.49 -15.67 16 13 C 0.08 2.12 2.61 30.59 0.08 2.20 16 14 C -0.14 -3.37 5.54 30.59 0.17 -3.20 16 15 C -0.11 -2.00 5.92 30.60 0.18 -1.82 16 16 C -0.12 -1.77 5.92 30.60 0.18 -1.59 16 17 C -0.11 -1.80 5.92 30.58 0.18 -1.62 16 18 C -0.11 -2.53 5.57 30.58 0.17 -2.36 16 19 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 20 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 21 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 22 H 0.05 2.41 8.14 -2.39 -0.02 2.40 16 23 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 24 H 0.04 1.67 7.87 -2.39 -0.02 1.65 16 25 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 26 H 0.06 1.52 7.79 -2.39 -0.02 1.50 16 27 H 0.05 1.36 7.87 -2.39 -0.02 1.34 16 28 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -64.61 289.94 4.21 -60.39 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: 1.00 Total: 4.43 kcal Atomic # 6 Polarization: -41.43 SS G_CDS: 2.39 Total: -39.04 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.28 Total: -57.09 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -1.49 Total: -15.67 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -64.61 4.21 -60.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579508.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.842 kcal (2) G-P(sol) polarization free energy of solvation -64.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds