Wall clock time and date at job start Sun Mar 29 2020 22:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.46977 * 2 1 4 4 C 1.46506 * 119.99524 * 90.00690 * 3 2 1 5 5 C 1.50698 * 109.47006 * 269.99278 * 4 3 2 6 6 H 1.08005 * 119.99819 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00046 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00192 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99979 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47261 * 60.00310 * 9 7 5 12 12 H 1.48500 * 109.47454 * 300.00304 * 9 7 5 13 13 C 1.34774 * 120.00119 * 269.99906 * 3 2 1 14 14 O 1.21285 * 119.99988 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00181 * 0.02562 * 13 3 2 16 16 H 1.09003 * 115.54664 * 325.66016 * 15 13 3 17 17 C 1.52992 * 117.50199 * 111.37395 * 15 13 3 18 18 C 1.52993 * 60.00235 * 107.48827 * 17 15 13 19 19 H 1.09005 * 117.52146 * 107.47767 * 18 17 15 20 20 N 1.46900 * 117.50186 * 252.51207 * 18 17 15 21 21 H 1.08998 * 109.47238 * 179.97438 * 1 2 3 22 22 H 1.09010 * 109.47084 * 299.99548 * 1 2 3 23 23 H 1.08996 * 109.47579 * 59.99762 * 1 2 3 24 24 H 1.09003 * 109.46439 * 240.00469 * 2 1 3 25 25 H 1.08995 * 109.47110 * 120.00844 * 2 1 3 26 26 H 1.09001 * 109.47068 * 149.99942 * 4 3 2 27 27 H 1.08993 * 109.47068 * 29.99396 * 4 3 2 28 28 H 0.97001 * 119.99934 * 359.97438 * 8 7 5 29 29 H 1.09002 * 117.49783 * 214.97882 * 17 15 13 30 30 H 1.08999 * 117.49903 * 359.97438 * 17 15 13 31 31 H 1.00901 * 111.00122 * 248.62235 * 20 18 17 32 32 H 1.00900 * 110.99716 * 12.57267 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 1.0068 2.7821 1.7039 6 1 0.1157 2.7247 1.0963 7 6 0.9951 3.5046 2.8782 8 7 2.0799 3.5741 3.6183 9 14 -0.5617 4.3846 3.4179 10 1 -0.3142 5.0847 4.7040 11 1 -1.6541 3.3943 3.5951 12 1 -0.9545 5.3750 2.3834 13 6 2.2429 2.0166 -1.1672 14 8 2.6476 3.1599 -1.1671 15 6 1.9913 1.3064 -2.4723 16 1 2.2012 0.2368 -2.4735 17 6 0.8249 1.7989 -3.3311 18 6 2.2653 2.0816 -3.7626 19 1 2.6554 1.5219 -4.6127 20 7 2.7535 3.4611 -3.6344 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.8932 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 3.0645 2.7984 1.1385 27 1 2.5506 1.3450 2.0283 28 1 2.8883 3.1168 3.3383 29 1 0.2670 1.0533 -3.8975 30 1 0.2392 2.6364 -2.9520 31 1 2.9009 3.8783 -4.5413 32 1 2.1218 4.0180 -3.0786 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050463467.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:19 Heat of formation + Delta-G solvation = -9.098972 kcal Electronic energy + Delta-G solvation = -14619.429699 eV Core-core repulsion = 12194.889118 eV Total energy + Delta-G solvation = -2424.540581 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.49960 -36.69072 -35.06699 -32.94282 -30.70878 -29.87553 -27.00357 -24.00918 -22.71037 -22.09386 -21.16449 -18.03539 -17.22712 -16.90914 -15.46178 -15.18975 -14.22963 -13.91561 -13.66646 -13.54908 -13.12570 -12.71401 -12.36202 -12.00862 -11.93425 -11.58062 -11.36471 -11.15533 -10.81766 -10.63953 -10.34579 -10.11204 -10.07728 -9.04275 -8.80179 -8.34068 -8.09983 -7.52562 -6.32997 -4.04401 3.26623 3.43734 3.47934 3.65315 3.88173 4.20299 4.54801 4.56511 4.97080 5.04654 5.15375 5.31344 5.41086 5.55272 5.72303 5.76352 5.83400 5.95702 6.11313 6.15526 6.34729 6.78490 6.90356 7.21054 7.35860 7.55083 7.75444 8.10871 8.41866 8.51006 8.83572 9.19585 9.65151 11.03769 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.033047 B = 0.009527 C = 0.008815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.075950 B = 2938.422627 C = 3175.518665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.115 3.885 3 N -0.595 5.595 4 C 0.237 3.763 5 C -0.600 4.600 6 H 0.051 0.949 7 C 0.018 3.982 8 N -0.911 5.911 9 Si 1.070 2.930 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.289 1.289 13 C 0.534 3.466 14 O -0.522 6.522 15 C -0.184 4.184 16 H 0.117 0.883 17 C -0.199 4.199 18 C 0.065 3.935 19 H 0.119 0.881 20 N -0.798 5.798 21 H 0.051 0.949 22 H 0.073 0.927 23 H 0.050 0.950 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.032 0.968 27 H 0.018 0.982 28 H 0.267 0.733 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.333 0.667 32 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.000 -7.248 -12.504 14.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.010 4.010 3 N -0.327 5.327 4 C 0.117 3.883 5 C -0.639 4.639 6 H 0.070 0.930 7 C -0.186 4.186 8 N -0.547 5.547 9 Si 0.898 3.102 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.215 1.215 13 C 0.320 3.680 14 O -0.398 6.398 15 C -0.207 4.207 16 H 0.135 0.865 17 C -0.239 4.239 18 C -0.049 4.049 19 H 0.137 0.863 20 N -0.329 5.329 21 H 0.070 0.930 22 H 0.092 0.908 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.050 0.950 27 H 0.036 0.964 28 H 0.078 0.922 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.145 0.855 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.761 -5.949 -10.892 12.715 hybrid contribution -0.407 -1.030 -1.572 1.923 sum -3.168 -6.980 -12.464 14.632 Atomic orbital electron populations 1.22202 0.96330 1.00678 1.03363 1.21353 0.94632 0.83726 1.01249 1.48003 1.64217 1.13223 1.07217 1.19307 0.97813 0.92098 0.79075 1.22246 0.97733 1.34528 1.09345 0.93042 1.25778 1.03286 0.96106 0.93464 1.70791 1.02114 1.42185 1.39653 0.83531 0.74167 0.76219 0.76266 1.20701 1.21539 1.21520 1.19323 0.78458 0.86384 0.83791 1.90639 1.45327 1.17262 1.86580 1.22632 1.05616 1.00085 0.92323 0.86491 1.23627 0.92521 1.04232 1.03549 1.22192 0.94334 0.92471 0.95883 0.86320 1.58333 1.54132 1.01472 1.18937 0.93027 0.90758 0.93121 0.91984 0.91228 0.94955 0.96381 0.92230 0.88366 0.88553 0.85461 0.82320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 10.24 37.16 0.38 -2.34 16 2 C 0.11 1.96 6.00 -4.04 -0.02 1.93 16 3 N -0.59 -13.10 2.46 -175.06 -0.43 -13.53 16 4 C 0.24 6.32 4.52 -5.19 -0.02 6.30 16 5 C -0.60 -17.29 8.92 -34.44 -0.31 -17.60 16 6 H 0.05 1.49 7.42 -52.48 -0.39 1.10 16 7 C 0.02 0.52 5.46 -17.82 -0.10 0.42 16 8 N -0.91 -28.22 13.65 55.43 0.76 -27.47 16 9 Si 1.07 25.93 29.90 -169.99 -5.08 20.84 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.53 11.58 7.46 -10.99 -0.08 11.50 16 14 O -0.52 -13.32 13.54 5.55 0.08 -13.25 16 15 C -0.18 -2.92 5.29 -91.78 -0.49 -3.41 16 16 H 0.12 1.57 6.44 -51.93 -0.33 1.23 16 17 C -0.20 -2.67 9.93 -26.74 -0.27 -2.93 16 18 C 0.07 0.90 7.20 -67.72 -0.49 0.41 16 19 H 0.12 1.28 8.14 -51.93 -0.42 0.85 16 20 N -0.80 -12.33 8.48 -4.67 -0.04 -12.37 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.07 1.44 7.26 -51.92 -0.38 1.06 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.87 6.00 -51.93 -0.31 0.55 16 25 H 0.07 1.16 7.89 -51.93 -0.41 0.75 16 26 H 0.03 0.97 7.29 -51.93 -0.38 0.59 16 27 H 0.02 0.49 7.76 -51.93 -0.40 0.08 16 28 H 0.27 8.26 7.22 -40.82 -0.29 7.96 16 29 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.10 1.46 8.09 -51.93 -0.42 1.04 16 31 H 0.33 3.95 9.08 -39.29 -0.36 3.60 16 32 H 0.36 6.24 7.29 -39.29 -0.29 5.96 16 LS Contribution 268.67 15.07 4.05 4.05 Total: -1.00 -33.88 268.67 -6.51 -40.39 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -4.45 Total: 7.05 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -1.39 Total: -5.72 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 0.29 Total: -53.37 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.08 Total: -13.25 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -5.08 Total: 20.84 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -33.88 -6.51 -40.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050463467.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.293 kcal (2) G-P(sol) polarization free energy of solvation -33.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds