Wall clock time and date at job start Sun Mar 29 2020 22:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.46977 * 2 1 4 4 C 1.46506 * 119.99524 * 90.00690 * 3 2 1 5 5 C 1.50698 * 109.47006 * 269.99278 * 4 3 2 6 6 H 1.08005 * 119.99819 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00046 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00192 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99979 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47261 * 60.00310 * 9 7 5 12 12 H 1.48500 * 109.47454 * 300.00304 * 9 7 5 13 13 C 1.34774 * 120.00119 * 269.99906 * 3 2 1 14 14 O 1.21285 * 119.99988 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00181 * 0.02562 * 13 3 2 16 16 H 1.09003 * 115.54664 * 325.66016 * 15 13 3 17 17 C 1.52992 * 117.50199 * 111.37395 * 15 13 3 18 18 C 1.52993 * 60.00235 * 107.48827 * 17 15 13 19 19 H 1.09005 * 117.52146 * 107.47767 * 18 17 15 20 20 N 1.46900 * 117.50186 * 252.51207 * 18 17 15 21 21 H 1.08998 * 109.47238 * 179.97438 * 1 2 3 22 22 H 1.09010 * 109.47084 * 299.99548 * 1 2 3 23 23 H 1.08996 * 109.47579 * 59.99762 * 1 2 3 24 24 H 1.09003 * 109.46439 * 240.00469 * 2 1 3 25 25 H 1.08995 * 109.47110 * 120.00844 * 2 1 3 26 26 H 1.09001 * 109.47068 * 149.99942 * 4 3 2 27 27 H 1.08993 * 109.47068 * 29.99396 * 4 3 2 28 28 H 0.97001 * 119.99934 * 359.97438 * 8 7 5 29 29 H 1.09002 * 117.49783 * 214.97882 * 17 15 13 30 30 H 1.08999 * 117.49903 * 359.97438 * 17 15 13 31 31 H 1.00901 * 111.00122 * 248.62235 * 20 18 17 32 32 H 1.00900 * 110.99716 * 12.57267 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 1.0068 2.7821 1.7039 6 1 0.1157 2.7247 1.0963 7 6 0.9951 3.5046 2.8782 8 7 2.0799 3.5741 3.6183 9 14 -0.5617 4.3846 3.4179 10 1 -0.3142 5.0847 4.7040 11 1 -1.6541 3.3943 3.5951 12 1 -0.9545 5.3750 2.3834 13 6 2.2429 2.0166 -1.1672 14 8 2.6476 3.1599 -1.1671 15 6 1.9913 1.3064 -2.4723 16 1 2.2012 0.2368 -2.4735 17 6 0.8249 1.7989 -3.3311 18 6 2.2653 2.0816 -3.7626 19 1 2.6554 1.5219 -4.6127 20 7 2.7535 3.4611 -3.6344 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.8932 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 3.0645 2.7984 1.1385 27 1 2.5506 1.3450 2.0283 28 1 2.8883 3.1168 3.3383 29 1 0.2670 1.0533 -3.8975 30 1 0.2392 2.6364 -2.9520 31 1 2.9009 3.8783 -4.5413 32 1 2.1218 4.0180 -3.0786 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050463467.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:19 Heat of formation + Delta-G solvation = -34.243951 kcal Electronic energy + Delta-G solvation = -14620.520067 eV Core-core repulsion = 12194.889118 eV Total energy + Delta-G solvation = -2425.630949 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.03409 -38.06909 -36.76278 -35.09907 -31.92483 -31.45953 -28.97059 -25.83762 -24.30637 -23.61261 -22.34942 -19.61242 -19.05492 -18.56735 -16.87360 -16.77084 -15.97706 -15.67222 -15.32937 -14.87131 -14.54197 -14.18555 -14.08388 -13.69823 -13.43749 -13.25164 -13.05022 -12.55739 -12.41120 -12.37414 -11.98815 -11.83317 -11.27868 -11.14555 -10.61089 -10.46772 -9.43903 -9.22873 -8.66819 -6.42359 1.46748 1.56200 1.74713 1.76366 2.30322 2.53689 2.96507 3.10619 3.45255 3.71865 3.93203 4.01959 4.08304 4.29471 4.43272 4.51302 4.73193 4.80926 4.87128 4.92833 4.96554 5.00287 5.06394 5.44571 5.65792 5.84704 6.16575 6.24441 6.46352 6.65354 6.81113 7.33602 7.54576 8.66644 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.033047 B = 0.009527 C = 0.008815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.075950 B = 2938.422627 C = 3175.518665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.107 3.893 3 N -0.603 5.603 4 C 0.248 3.752 5 C -0.604 4.604 6 H 0.046 0.954 7 C -0.036 4.036 8 N -0.934 5.934 9 Si 1.117 2.883 10 H -0.280 1.280 11 H -0.262 1.262 12 H -0.280 1.280 13 C 0.520 3.480 14 O -0.575 6.575 15 C -0.200 4.200 16 H 0.151 0.849 17 C -0.179 4.179 18 C 0.071 3.929 19 H 0.160 0.840 20 N -0.821 5.821 21 H 0.091 0.909 22 H 0.034 0.966 23 H 0.052 0.948 24 H 0.105 0.895 25 H 0.068 0.932 26 H -0.012 1.012 27 H 0.012 0.988 28 H 0.254 0.746 29 H 0.140 0.860 30 H 0.071 0.929 31 H 0.350 0.650 32 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.582 -9.030 -14.515 17.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.015 4.015 3 N -0.334 5.334 4 C 0.126 3.874 5 C -0.642 4.642 6 H 0.065 0.935 7 C -0.233 4.233 8 N -0.571 5.571 9 Si 0.938 3.062 10 H -0.205 1.205 11 H -0.187 1.187 12 H -0.206 1.206 13 C 0.309 3.691 14 O -0.454 6.454 15 C -0.222 4.222 16 H 0.168 0.832 17 C -0.219 4.219 18 C -0.043 4.043 19 H 0.178 0.822 20 N -0.351 5.351 21 H 0.110 0.890 22 H 0.053 0.947 23 H 0.071 0.929 24 H 0.123 0.877 25 H 0.087 0.913 26 H 0.006 0.994 27 H 0.030 0.970 28 H 0.063 0.937 29 H 0.158 0.842 30 H 0.090 0.910 31 H 0.166 0.834 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.342 -7.792 -12.949 15.724 hybrid contribution 0.144 -0.495 -0.992 1.118 sum -4.198 -8.287 -13.941 16.753 Atomic orbital electron populations 1.22109 0.95421 1.02688 1.01469 1.21707 0.95351 0.81135 1.03347 1.48098 1.64526 1.15045 1.05776 1.18815 0.95687 0.91326 0.81536 1.22487 0.98089 1.34441 1.09216 0.93541 1.27355 1.05551 0.96597 0.93820 1.70919 1.02418 1.43338 1.40465 0.82940 0.71237 0.75929 0.76058 1.20487 1.18685 1.20556 1.20447 0.77013 0.86151 0.85448 1.90609 1.47462 1.19814 1.87564 1.22637 1.08668 1.01348 0.89522 0.83180 1.23681 0.92142 1.04015 1.02038 1.22548 0.94666 0.91528 0.95549 0.82238 1.58258 1.54218 1.02606 1.20061 0.89001 0.94705 0.92858 0.87674 0.91302 0.99382 0.97049 0.93719 0.84224 0.91020 0.83448 0.84042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.79 10.24 71.98 0.74 -4.05 16 2 C 0.11 3.44 6.00 86.38 0.52 3.96 16 3 N -0.60 -26.77 2.46 -826.17 -2.03 -28.80 16 4 C 0.25 13.87 4.52 85.63 0.39 14.25 16 5 C -0.60 -35.84 8.92 25.60 0.23 -35.61 16 6 H 0.05 2.75 7.42 -2.91 -0.02 2.73 16 7 C -0.04 -2.13 5.46 84.65 0.46 -1.67 16 8 N -0.93 -59.71 13.65 21.45 0.29 -59.42 16 9 Si 1.12 52.37 29.90 68.60 2.05 54.42 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 13 C 0.52 22.57 7.46 87.66 0.65 23.22 16 14 O -0.57 -30.43 13.54 -3.05 -0.04 -30.47 16 15 C -0.20 -5.76 5.29 -11.54 -0.06 -5.82 16 16 H 0.15 3.27 6.44 -2.39 -0.02 3.25 16 17 C -0.18 -4.17 9.93 30.59 0.30 -3.86 16 18 C 0.07 1.72 7.20 44.91 0.32 2.04 16 19 H 0.16 2.58 8.14 -2.38 -0.02 2.56 16 20 N -0.82 -24.60 8.48 -168.69 -1.43 -26.03 16 21 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 22 H 0.03 1.31 7.26 -2.38 -0.02 1.29 16 23 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.11 2.50 6.00 -2.39 -0.01 2.48 16 25 H 0.07 2.21 7.89 -2.39 -0.02 2.19 16 26 H -0.01 -0.76 7.29 -2.39 -0.02 -0.77 16 27 H 0.01 0.65 7.76 -2.39 -0.02 0.63 16 28 H 0.25 16.47 7.22 -92.71 -0.67 15.80 16 29 H 0.14 2.14 8.14 -2.39 -0.02 2.13 16 30 H 0.07 2.06 8.09 -2.39 -0.02 2.04 16 31 H 0.35 7.85 9.08 -89.69 -0.81 7.03 16 32 H 0.34 12.17 7.29 -89.69 -0.65 11.51 16 Total: -1.00 -78.10 268.67 2.16 -75.94 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -0.24 Total: 21.89 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: 3.55 Total: -7.54 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -3.17 Total: -114.24 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.04 Total: -30.47 kcal Atomic # 14 Polarization: 52.37 SS G_CDS: 2.05 Total: 54.42 kcal Total: -78.10 2.16 -75.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050463467.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.696 kcal (2) G-P(sol) polarization free energy of solvation -78.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds