Wall clock time and date at job start Sun Mar 29 2020 22:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47143 * 2 1 4 4 H 1.08998 * 109.47046 * 54.44067 * 3 2 1 5 5 C 1.50699 * 109.47450 * 174.44525 * 3 2 1 6 6 H 1.07995 * 120.00538 * 119.99805 * 5 3 2 7 7 C 1.37882 * 119.99473 * 299.99937 * 5 3 2 8 8 N 1.31522 * 119.99663 * 180.02562 * 7 5 3 9 9 Si 1.86792 * 120.00184 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.47377 * 90.00224 * 9 7 5 11 11 H 1.48506 * 109.46794 * 210.00231 * 9 7 5 12 12 H 1.48496 * 109.47449 * 329.99907 * 9 7 5 13 13 N 1.46899 * 109.47065 * 294.44533 * 3 2 1 14 14 C 1.46898 * 111.00263 * 153.01196 * 13 3 2 15 15 C 1.53121 * 109.52240 * 273.31296 * 14 13 3 16 16 C 1.53044 * 109.27287 * 182.50332 * 15 14 13 17 17 N 1.46841 * 109.57463 * 59.08670 * 16 15 14 18 18 C 1.46841 * 111.20136 * 298.28508 * 17 16 15 19 19 C 1.53039 * 109.52119 * 61.74190 * 18 17 16 20 20 H 1.09004 * 109.46970 * 60.72552 * 1 2 3 21 21 H 1.08993 * 109.47356 * 300.72087 * 1 2 3 22 22 H 1.09000 * 109.46938 * 180.71830 * 1 2 3 23 23 H 1.09005 * 109.47002 * 119.99516 * 2 1 3 24 24 H 1.08997 * 109.47762 * 239.99813 * 2 1 3 25 25 H 0.96998 * 119.99642 * 180.02562 * 8 7 5 26 26 H 1.00900 * 111.00182 * 29.05300 * 13 3 2 27 27 H 1.08998 * 109.52405 * 33.44392 * 14 13 3 28 28 H 1.08997 * 109.50576 * 302.38408 * 15 14 13 29 29 H 1.08996 * 109.50000 * 62.49722 * 15 14 13 30 30 H 1.08996 * 109.41054 * 299.06616 * 16 15 14 31 31 H 1.09000 * 109.45206 * 179.12610 * 16 15 14 32 32 H 1.00901 * 111.00597 * 62.38714 * 17 16 15 33 33 H 1.09002 * 109.46247 * 301.73315 * 18 17 16 34 34 H 1.08999 * 109.46158 * 181.75500 * 18 17 16 35 35 H 1.09004 * 109.50546 * 180.87902 * 19 18 17 36 36 H 1.09001 * 109.53544 * 60.78602 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5976 1.9843 0.8360 5 6 3.5407 1.4448 0.1375 6 1 4.1531 1.8868 -0.6344 7 6 4.1319 0.8825 1.2490 8 7 5.4416 0.8849 1.3693 9 14 3.0727 0.1185 2.5845 10 1 2.8536 -1.3185 2.2812 11 1 3.7586 0.2488 3.8953 12 1 1.7639 0.8180 2.6391 13 7 1.6628 2.0952 -1.2608 14 6 1.5365 3.5481 -1.0844 15 6 0.1202 3.8846 -0.6095 16 6 -0.0242 5.4033 -0.4875 17 7 0.2374 6.0285 -1.7902 18 6 1.6079 5.7585 -2.2432 19 6 1.8006 4.2506 -2.4190 20 1 -0.3633 0.5025 -0.8965 21 1 -0.3634 0.5249 0.8834 22 1 -0.3633 -1.0276 0.0129 23 1 1.8933 -0.5138 0.8901 24 1 1.8934 -0.5138 -0.8899 25 1 5.8575 0.4890 2.1511 26 1 0.8115 1.7006 -1.6318 27 1 2.2598 3.8893 -0.3438 28 1 -0.6047 3.5078 -1.3309 29 1 -0.0575 3.4220 0.3613 30 1 0.6908 5.7775 0.2451 31 1 -1.0363 5.6470 -0.1645 32 1 -0.4366 5.7273 -2.4779 33 1 2.3153 6.1310 -1.5023 34 1 1.7812 6.2603 -3.1952 35 1 2.8226 4.0493 -2.7402 36 1 1.1034 3.8791 -3.1700 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183965.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:17 Heat of formation + Delta-G solvation = -31.263546 kcal Electronic energy + Delta-G solvation = -15026.747674 eV Core-core repulsion = 12737.079059 eV Total energy + Delta-G solvation = -2289.668615 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.15408 -37.73317 -34.52070 -33.55124 -31.74072 -30.28827 -28.54045 -24.62519 -23.79623 -23.44559 -21.76028 -21.20171 -18.82617 -17.42317 -16.94896 -16.08192 -15.61671 -15.56554 -15.16053 -14.98430 -14.56539 -14.43378 -13.87724 -13.63609 -13.20455 -13.16199 -12.78836 -12.61481 -12.44097 -12.22730 -12.15370 -11.87047 -11.56322 -11.45082 -11.24681 -11.16156 -10.70368 -9.38070 -8.96690 -8.29840 -6.31353 1.25180 1.30456 1.40709 2.28545 3.02756 3.32293 3.51904 3.84183 4.05076 4.18770 4.21833 4.31295 4.37036 4.39450 4.45264 4.54320 4.71793 4.76568 4.89626 4.95898 5.02173 5.07099 5.07558 5.12455 5.16807 5.29174 5.34054 5.45542 5.70220 6.05203 6.08305 6.50827 6.56428 6.75118 6.96828 7.33188 8.87784 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034223 B = 0.009665 C = 0.008734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.964739 B = 2896.221066 C = 3204.939584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C 0.199 3.801 4 H -0.007 1.007 5 C -0.500 4.500 6 H 0.028 0.972 7 C 0.005 3.995 8 N -0.952 5.952 9 Si 0.950 3.050 10 H -0.265 1.265 11 H -0.299 1.299 12 H -0.249 1.249 13 N -0.680 5.680 14 C 0.092 3.908 15 C -0.173 4.173 16 C 0.064 3.936 17 N -0.682 5.682 18 C 0.062 3.938 19 C -0.133 4.133 20 H 0.068 0.932 21 H 0.048 0.952 22 H 0.069 0.931 23 H 0.038 0.962 24 H 0.061 0.939 25 H 0.264 0.736 26 H 0.334 0.666 27 H 0.039 0.961 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.349 0.651 33 H 0.057 0.943 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.829 5.202 -4.585 16.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.090 3.910 4 H 0.010 0.990 5 C -0.539 4.539 6 H 0.047 0.953 7 C -0.191 4.191 8 N -0.593 5.593 9 Si 0.777 3.223 10 H -0.191 1.191 11 H -0.227 1.227 12 H -0.173 1.173 13 N -0.311 5.311 14 C -0.019 4.019 15 C -0.214 4.214 16 C -0.066 4.066 17 N -0.311 5.311 18 C -0.068 4.068 19 C -0.173 4.173 20 H 0.087 0.913 21 H 0.067 0.933 22 H 0.088 0.912 23 H 0.057 0.943 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.154 0.846 27 H 0.058 0.942 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.168 0.832 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.068 0.932 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.885 5.808 -4.452 15.695 hybrid contribution -0.237 -1.514 1.085 1.877 sum -14.122 4.294 -3.367 15.140 Atomic orbital electron populations 1.21827 0.94238 1.02527 1.01827 1.22027 0.96464 0.98263 1.00777 1.19347 0.93251 0.90949 0.87502 0.98951 1.21337 0.91909 1.36201 1.04407 0.95325 1.25850 0.95977 0.96777 1.00486 1.70060 1.11070 1.47684 1.30508 0.85835 0.79406 0.79554 0.77507 1.19074 1.22701 1.17321 1.60441 1.38392 1.03069 1.29188 1.21507 0.95227 0.88239 0.96910 1.22907 0.97416 0.99466 1.01630 1.21939 1.02308 0.90287 0.92085 1.60692 1.04177 1.61052 1.05139 1.21990 0.90561 0.92887 1.01349 1.22159 1.01845 0.96749 0.96532 0.91288 0.93325 0.91177 0.94336 0.92012 0.92687 0.84611 0.94230 0.90435 0.92857 0.92423 0.88888 0.83243 0.92442 0.88797 0.93174 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.44 9.74 71.98 0.70 -3.74 16 2 C -0.14 -5.64 5.00 30.59 0.15 -5.49 16 3 C 0.20 9.25 1.42 44.17 0.06 9.31 16 4 H -0.01 -0.34 6.32 -2.39 -0.02 -0.35 16 5 C -0.50 -29.43 9.19 25.60 0.24 -29.20 16 6 H 0.03 1.92 8.06 -2.91 -0.02 1.89 16 7 C 0.01 0.32 5.45 84.65 0.46 0.78 16 8 N -0.95 -61.19 13.96 21.45 0.30 -60.89 16 9 Si 0.95 45.78 24.41 68.60 1.67 47.46 16 10 H -0.26 -12.07 6.82 99.48 0.68 -11.39 16 11 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 12 H -0.25 -11.11 6.53 99.48 0.65 -10.46 16 13 N -0.68 -27.02 6.06 -472.91 -2.87 -29.88 16 14 C 0.09 3.24 2.33 45.00 0.10 3.34 16 15 C -0.17 -4.74 5.33 30.65 0.16 -4.58 16 16 C 0.06 1.53 6.55 86.33 0.57 2.10 16 17 N -0.68 -15.19 6.87 -514.02 -3.53 -18.72 16 18 C 0.06 1.55 6.55 86.33 0.57 2.12 16 19 C -0.13 -3.96 5.69 30.65 0.17 -3.78 16 20 H 0.07 1.80 6.49 -2.39 -0.02 1.79 16 21 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.04 1.69 3.22 -2.38 -0.01 1.68 16 24 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 25 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 26 H 0.33 11.24 6.20 -89.69 -0.56 10.68 16 27 H 0.04 1.73 7.70 -2.39 -0.02 1.72 16 28 H 0.08 1.81 8.09 -2.39 -0.02 1.79 16 29 H 0.05 1.59 7.61 -2.39 -0.02 1.57 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.35 6.41 8.86 -89.69 -0.79 5.62 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -67.38 273.13 -1.61 -68.99 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -0.38 Total: 22.17 kcal Atomic # 6 Polarization: -32.32 SS G_CDS: 3.19 Total: -29.13 kcal Atomic # 7 Polarization: -103.39 SS G_CDS: -6.10 Total: -109.49 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.67 Total: 47.46 kcal Total: -67.38 -1.61 -68.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183965.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.730 kcal (2) G-P(sol) polarization free energy of solvation -67.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds