Wall clock time and date at job start Sun Mar 29 2020 22:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46938 * 2 1 4 4 C 1.50702 * 109.46762 * 120.00168 * 2 1 3 5 5 H 1.07991 * 120.00184 * 116.67896 * 4 2 1 6 6 C 1.37882 * 119.99747 * 296.67379 * 4 2 1 7 7 N 1.31517 * 120.00168 * 352.68016 * 6 4 2 8 8 Si 1.86798 * 119.99719 * 172.67229 * 6 4 2 9 9 H 1.48499 * 109.47211 * 265.07184 * 8 6 4 10 10 H 1.48497 * 109.47315 * 25.07518 * 8 6 4 11 11 H 1.48498 * 109.47028 * 145.07473 * 8 6 4 12 12 N 1.46892 * 109.47106 * 239.99892 * 2 1 3 13 13 C 1.46896 * 111.00067 * 85.00238 * 12 2 1 14 14 C 1.52999 * 109.47208 * 179.97438 * 13 12 2 15 15 H 1.08999 * 110.21713 * 294.52487 * 14 13 12 16 16 C 1.54488 * 110.24577 * 172.49976 * 14 13 12 17 17 C 1.54626 * 101.76671 * 266.41695 * 16 14 13 18 18 C 1.51282 * 104.19522 * 335.20193 * 17 16 14 19 19 O 1.21279 * 124.94134 * 196.27437 * 18 17 16 20 20 N 1.34420 * 110.11625 * 16.25198 * 18 17 16 21 21 H 1.09002 * 109.47704 * 297.70644 * 1 2 3 22 22 H 1.09006 * 109.47244 * 57.70387 * 1 2 3 23 23 H 1.09006 * 109.47446 * 177.70245 * 1 2 3 24 24 H 0.96994 * 119.99566 * 179.97438 * 7 6 4 25 25 H 1.00905 * 111.00519 * 321.04842 * 12 2 1 26 26 H 1.09003 * 109.47211 * 299.99554 * 13 12 2 27 27 H 1.08999 * 109.47174 * 60.00023 * 13 12 2 28 28 H 1.09001 * 110.96749 * 24.53673 * 16 14 13 29 29 H 1.09002 * 110.96982 * 148.29760 * 16 14 13 30 30 H 1.08995 * 110.48422 * 216.52510 * 17 16 14 31 31 H 1.08998 * 110.59973 * 93.93853 * 17 16 14 32 32 H 0.96996 * 124.34907 * 180.38203 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6081 -1.6187 1.1323 6 6 1.7566 -0.2007 2.4816 7 7 1.1823 0.9765 2.6002 8 14 2.1987 -1.1823 4.0082 9 1 1.0171 -1.9636 4.4537 10 1 3.3155 -2.1093 3.6944 11 1 2.6149 -0.2542 5.0901 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2226 -2.3468 14 6 2.5963 -0.5329 -3.5741 15 1 3.6278 -0.8485 -3.4175 16 6 2.4927 0.3577 -4.8321 17 6 1.1156 -0.0574 -5.3998 18 6 0.8997 -1.4556 -4.8642 19 8 0.0832 -2.2444 -5.2908 20 7 1.7449 -1.6968 -3.8472 21 1 -0.3634 0.4778 0.9098 22 1 -0.3634 0.5491 -0.8687 23 1 -0.3634 -1.0269 -0.0412 24 1 0.9881 1.3348 3.4803 25 1 1.4495 -1.4979 -1.4100 26 1 1.0871 0.6163 -2.5525 27 1 2.7589 1.0461 -2.1181 28 1 2.5018 1.4142 -4.5639 29 1 3.2908 0.1293 -5.5386 30 1 1.1390 -0.0656 -6.4895 31 1 0.3349 0.6134 -5.0410 32 1 1.7865 -2.5325 -3.3566 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070621892.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:33 Heat of formation + Delta-G solvation = -45.110032 kcal Electronic energy + Delta-G solvation = -14231.213100 eV Core-core repulsion = 11805.110962 eV Total energy + Delta-G solvation = -2426.102138 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.26675 -36.98846 -35.37350 -32.43266 -31.26381 -29.62106 -26.97637 -25.16304 -23.55450 -21.04246 -20.49598 -19.95557 -17.32421 -16.63115 -15.73781 -15.12178 -14.78561 -14.34978 -13.87773 -13.49318 -13.30311 -12.78214 -12.57115 -12.33125 -11.85237 -11.50860 -11.36319 -11.08981 -10.90791 -10.78018 -10.46945 -10.22499 -9.88306 -9.77253 -9.19267 -8.87193 -8.37057 -7.35140 -6.03649 -4.04407 2.70113 3.30729 3.37780 3.41675 3.51447 4.34037 4.44022 4.49428 4.80405 4.98352 5.29458 5.41900 5.45692 5.59871 5.62632 5.77864 5.91092 6.13503 6.23334 6.59887 6.74002 6.94194 6.99848 7.15855 7.28412 7.59001 7.83867 8.17058 8.36586 8.43665 8.54909 9.02078 9.60061 11.05389 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.054426 B = 0.006556 C = 0.006450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.339264 B = 4269.758880 C = 4340.239521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.211 3.789 3 H 0.039 0.961 4 C -0.498 4.498 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.895 3.105 9 H -0.282 1.282 10 H -0.273 1.273 11 H -0.288 1.288 12 N -0.682 5.682 13 C 0.048 3.952 14 C 0.131 3.869 15 H 0.095 0.905 16 C -0.128 4.128 17 C -0.157 4.157 18 C 0.517 3.483 19 O -0.547 6.547 20 N -0.720 5.720 21 H 0.076 0.924 22 H 0.007 0.993 23 H 0.028 0.972 24 H 0.260 0.740 25 H 0.323 0.677 26 H 0.023 0.977 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.747 0.451 -12.264 12.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.103 3.897 3 H 0.057 0.943 4 C -0.537 4.537 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.209 1.209 10 H -0.198 1.198 11 H -0.214 1.214 12 N -0.312 5.312 13 C -0.084 4.084 14 C 0.025 3.975 15 H 0.113 0.887 16 C -0.166 4.166 17 C -0.197 4.197 18 C 0.303 3.697 19 O -0.425 6.425 20 N -0.374 5.374 21 H 0.095 0.905 22 H 0.026 0.974 23 H 0.047 0.953 24 H 0.070 0.930 25 H 0.139 0.861 26 H 0.041 0.959 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 2.938 0.368 -12.232 12.586 hybrid contribution -0.808 -0.608 1.052 1.459 sum 2.129 -0.240 -11.180 11.384 Atomic orbital electron populations 1.22376 1.00985 0.98719 1.00253 1.19183 0.89250 0.94804 0.86453 0.94319 1.21129 1.33083 1.09865 0.89622 0.91937 1.24954 0.95538 0.94851 0.99057 1.69946 1.43581 1.16461 1.23558 0.86527 0.78604 0.79920 0.82624 1.20866 1.19822 1.21369 1.60847 1.57953 1.09044 1.03364 1.22348 0.99139 0.96136 0.90733 1.21855 0.95383 0.85697 0.94523 0.88695 1.22634 0.96538 1.00986 0.96455 1.22325 0.99330 0.95392 1.02648 1.20922 0.79647 0.89293 0.79811 1.90730 1.36316 1.52792 1.62664 1.46333 1.38598 1.17311 1.35205 0.90477 0.97360 0.95291 0.93035 0.86054 0.95920 0.90332 0.88977 0.89993 0.88400 0.87949 0.74911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 9.00 37.16 0.33 -3.55 16 2 C 0.21 5.14 2.46 -68.87 -0.17 4.97 16 3 H 0.04 1.04 7.80 -51.93 -0.40 0.63 16 4 C -0.50 -13.58 8.79 -34.44 -0.30 -13.88 16 5 H 0.06 1.72 7.82 -52.49 -0.41 1.30 16 6 C 0.06 1.57 5.21 -17.82 -0.09 1.48 16 7 N -0.90 -25.55 11.91 55.43 0.66 -24.89 16 8 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 N -0.68 -13.53 6.23 -107.96 -0.67 -14.20 16 13 C 0.05 0.75 5.15 -3.83 -0.02 0.73 16 14 C 0.13 1.58 3.82 -67.01 -0.26 1.33 16 15 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 16 C -0.13 -1.17 6.70 -25.10 -0.17 -1.34 16 17 C -0.16 -1.66 6.86 -26.74 -0.18 -1.84 16 18 C 0.52 7.52 8.43 -10.86 -0.09 7.43 16 19 O -0.55 -10.17 18.03 5.56 0.10 -10.07 16 20 N -0.72 -9.54 5.20 -52.76 -0.27 -9.81 16 21 H 0.08 2.02 6.58 -51.93 -0.34 1.68 16 22 H 0.01 0.16 7.51 -51.93 -0.39 -0.23 16 23 H 0.03 0.66 8.09 -51.93 -0.42 0.24 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.32 6.21 7.44 -39.29 -0.29 5.92 16 26 H 0.02 0.37 7.48 -51.93 -0.39 -0.02 16 27 H 0.08 1.23 8.06 -51.93 -0.42 0.82 16 28 H 0.09 0.74 7.89 -51.93 -0.41 0.33 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.41 5.40 8.62 -40.82 -0.35 5.05 16 LS Contribution 266.81 15.07 4.02 4.02 Total: -1.00 -30.86 266.81 -6.79 -37.65 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -4.65 Total: 5.68 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -0.95 Total: -4.67 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -0.29 Total: -48.90 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.10 Total: -10.07 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.86 -6.79 -37.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070621892.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.456 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds