Wall clock time and date at job start Sun Mar 29 2020 21:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99682 * 2 1 4 4 H 1.48501 * 109.47129 * 240.00331 * 3 2 1 5 5 H 1.48498 * 109.47276 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47240 * 120.00269 * 3 2 1 7 7 C 1.37875 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21583 * 120.00270 * 359.72083 * 13 12 11 15 15 N 1.34775 * 119.99585 * 179.72218 * 13 12 11 16 16 C 1.46507 * 119.99876 * 179.97438 * 15 13 12 17 17 C 1.52999 * 117.49923 * 223.74790 * 16 15 13 18 18 C 1.52997 * 117.49798 * 155.08685 * 16 15 13 19 19 H 0.97000 * 120.00572 * 359.97438 * 1 2 3 20 20 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 21 21 H 1.09007 * 109.46560 * 299.99875 * 9 7 2 22 22 H 1.08995 * 109.47672 * 60.00122 * 10 9 7 23 23 H 1.09006 * 109.46819 * 299.99551 * 10 9 7 24 24 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 25 25 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 26 26 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 27 27 H 0.97000 * 120.00523 * 0.02562 * 15 13 12 28 28 H 1.08995 * 115.54817 * 9.42427 * 16 15 13 29 29 H 1.09004 * 117.50082 * 0.02562 * 17 16 15 30 30 H 1.09002 * 117.49430 * 145.02123 * 17 16 15 31 31 H 1.08995 * 117.50039 * 214.98179 * 18 16 15 32 32 H 1.09003 * 117.49972 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9871 -0.0020 12 7 2.4325 -6.1006 -0.0024 13 6 1.9833 -7.3712 -0.0086 14 8 0.7879 -7.5935 -0.0087 15 7 2.8592 -8.3956 -0.0146 16 6 2.3709 -9.7768 -0.0207 17 6 3.0609 -10.7742 0.9121 18 6 3.2952 -10.8503 -0.5987 19 1 -0.4851 0.8400 0.0004 20 1 0.6248 -2.5563 -0.8919 21 1 0.6241 -2.5575 0.8881 22 1 2.8714 -3.6047 0.8890 23 1 2.8727 -3.6038 -0.8910 24 1 0.8541 -5.0447 -0.8923 25 1 0.8534 -5.0450 0.8877 26 1 3.3862 -5.9232 -0.0026 27 1 3.8128 -8.2183 -0.0141 28 1 1.2994 -9.8959 -0.1811 29 1 3.8778 -10.4026 1.5307 30 1 2.4432 -11.5497 1.3652 31 1 2.8319 -11.6758 -1.1389 32 1 4.2665 -10.5288 -0.9748 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070650189.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:05 Heat of formation + Delta-G solvation = -23.235958 kcal Electronic energy + Delta-G solvation = -13328.738268 eV Core-core repulsion = 10903.584661 eV Total energy + Delta-G solvation = -2425.153607 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.90526 -37.39228 -35.28657 -33.41569 -32.65418 -30.86047 -26.64918 -23.42469 -22.64206 -21.87898 -20.85446 -20.41600 -18.16605 -16.76144 -16.24870 -15.42933 -15.00908 -14.69150 -14.39683 -14.03194 -13.76675 -12.89057 -12.26698 -11.96080 -11.82389 -11.80581 -11.39008 -10.87338 -10.74031 -10.71294 -10.60920 -10.12620 -9.84764 -9.43535 -9.12876 -9.00825 -8.54288 -8.36088 -6.00787 -4.04054 2.72361 3.20431 3.32596 3.37374 3.39242 3.79430 4.29951 4.45639 4.57107 4.73480 4.77169 5.34803 5.35334 5.53585 5.64731 5.77649 5.80645 5.82417 6.19462 6.46394 6.53235 6.63239 6.80626 7.02784 7.07121 7.64583 7.77766 7.98009 8.13086 8.38837 8.73447 9.02454 9.59987 11.10493 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.098562 B = 0.004197 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 284.015996 B = 6669.697503 C = 6859.449059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.134 3.866 12 N -0.741 5.741 13 C 0.703 3.297 14 O -0.591 6.591 15 N -0.723 5.723 16 C 0.105 3.895 17 C -0.199 4.199 18 C -0.194 4.194 19 H 0.262 0.738 20 H 0.019 0.981 21 H 0.019 0.981 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.394 0.606 27 H 0.396 0.604 28 H 0.138 0.862 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.437 -17.814 0.014 19.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.011 3.989 12 N -0.395 5.395 13 C 0.403 3.597 14 O -0.469 6.469 15 N -0.377 5.377 16 C -0.002 4.002 17 C -0.238 4.238 18 C -0.233 4.233 19 H 0.071 0.929 20 H 0.038 0.962 21 H 0.038 0.962 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.227 0.773 27 H 0.229 0.771 28 H 0.156 0.844 29 H 0.114 0.886 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.126 -17.833 0.012 19.204 hybrid contribution 1.465 1.075 0.021 1.818 sum 8.591 -16.758 0.033 18.832 Atomic orbital electron populations 1.69953 1.06060 1.26811 1.50456 1.25029 0.94858 0.99288 0.95277 0.86638 0.79553 0.83096 0.78571 1.20250 1.21271 1.20255 1.21171 0.92951 0.90971 1.51078 0.92707 1.19027 0.93857 0.90774 0.97721 1.21895 0.99804 0.93318 1.00831 1.21535 0.91288 0.84082 1.01968 1.45386 1.10509 1.04379 1.79193 1.15959 0.85245 0.80718 0.77775 1.90910 1.14111 1.84044 1.57862 1.44509 1.08712 1.04174 1.80301 1.21380 0.98162 0.77686 1.02998 1.23463 1.04177 1.03070 0.93054 1.23404 1.01691 1.01756 0.96399 0.92856 0.96213 0.96217 0.92757 0.92757 0.91888 0.91869 0.77293 0.77074 0.84412 0.88628 0.88089 0.87964 0.88610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 11 C 0.13 2.43 5.67 -4.04 -0.02 2.41 16 12 N -0.74 -10.94 5.56 -65.22 -0.36 -11.30 16 13 C 0.70 11.06 8.57 -86.92 -0.74 10.32 16 14 O -0.59 -11.87 15.91 5.29 0.08 -11.79 16 15 N -0.72 -8.22 5.57 -58.68 -0.33 -8.55 16 16 C 0.10 1.09 6.43 -67.93 -0.44 0.65 16 17 C -0.20 -1.57 10.46 -26.69 -0.28 -1.85 16 18 C -0.19 -1.44 10.46 -26.69 -0.28 -1.72 16 19 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 20 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.39 4.58 8.49 -40.82 -0.35 4.23 16 27 H 0.40 3.29 8.84 -40.82 -0.36 2.93 16 28 H 0.14 1.67 7.40 -51.93 -0.38 1.28 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 279.78 15.07 4.22 4.22 Total: -1.00 -32.90 279.78 -7.99 -40.89 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -4.86 Total: 1.92 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -2.45 Total: -5.69 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.05 Total: -46.05 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.08 Total: -11.79 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.90 -7.99 -40.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070650189.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.650 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds