Wall clock time and date at job start Sun Mar 29 2020 21:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99682 * 2 1 4 4 H 1.48501 * 109.47129 * 240.00331 * 3 2 1 5 5 H 1.48498 * 109.47276 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47240 * 120.00269 * 3 2 1 7 7 C 1.37875 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21583 * 120.00270 * 359.72083 * 13 12 11 15 15 N 1.34775 * 119.99585 * 179.72218 * 13 12 11 16 16 C 1.46507 * 119.99876 * 179.97438 * 15 13 12 17 17 C 1.52999 * 117.49923 * 223.74790 * 16 15 13 18 18 C 1.52997 * 117.49798 * 155.08685 * 16 15 13 19 19 H 0.97000 * 120.00572 * 359.97438 * 1 2 3 20 20 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 21 21 H 1.09007 * 109.46560 * 299.99875 * 9 7 2 22 22 H 1.08995 * 109.47672 * 60.00122 * 10 9 7 23 23 H 1.09006 * 109.46819 * 299.99551 * 10 9 7 24 24 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 25 25 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 26 26 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 27 27 H 0.97000 * 120.00523 * 0.02562 * 15 13 12 28 28 H 1.08995 * 115.54817 * 9.42427 * 16 15 13 29 29 H 1.09004 * 117.50082 * 0.02562 * 17 16 15 30 30 H 1.09002 * 117.49430 * 145.02123 * 17 16 15 31 31 H 1.08995 * 117.50039 * 214.98179 * 18 16 15 32 32 H 1.09003 * 117.49972 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9871 -0.0020 12 7 2.4325 -6.1006 -0.0024 13 6 1.9833 -7.3712 -0.0086 14 8 0.7879 -7.5935 -0.0087 15 7 2.8592 -8.3956 -0.0146 16 6 2.3709 -9.7768 -0.0207 17 6 3.0609 -10.7742 0.9121 18 6 3.2952 -10.8503 -0.5987 19 1 -0.4851 0.8400 0.0004 20 1 0.6248 -2.5563 -0.8919 21 1 0.6241 -2.5575 0.8881 22 1 2.8714 -3.6047 0.8890 23 1 2.8727 -3.6038 -0.8910 24 1 0.8541 -5.0447 -0.8923 25 1 0.8534 -5.0450 0.8877 26 1 3.3862 -5.9232 -0.0026 27 1 3.8128 -8.2183 -0.0141 28 1 1.2994 -9.8959 -0.1811 29 1 3.8778 -10.4026 1.5307 30 1 2.4432 -11.5497 1.3652 31 1 2.8319 -11.6758 -1.1389 32 1 4.2665 -10.5288 -0.9748 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070650189.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:05 Heat of formation + Delta-G solvation = -46.910822 kcal Electronic energy + Delta-G solvation = -13329.764887 eV Core-core repulsion = 10903.584661 eV Total energy + Delta-G solvation = -2426.180226 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.09444 -38.28114 -36.84870 -35.20390 -33.96130 -32.52439 -28.49254 -25.16422 -23.23670 -22.96448 -22.31119 -21.81869 -19.39666 -18.51852 -17.60112 -16.80342 -16.52860 -16.02258 -15.63513 -15.54586 -14.98988 -14.24274 -13.76887 -13.63592 -13.58287 -12.73218 -12.54402 -12.47204 -12.39561 -12.32275 -11.66905 -11.65779 -11.43966 -11.31461 -11.14782 -10.53870 -10.25795 -9.55893 -8.18405 -6.30195 1.42448 1.45746 1.53467 1.63312 2.04265 2.42952 3.04728 3.15226 3.25245 3.84424 4.10131 4.11485 4.16829 4.23883 4.56574 4.77290 4.79620 4.96337 5.00214 5.06125 5.17744 5.24429 5.45794 5.53790 5.57197 5.71983 5.85148 5.99636 6.23394 6.87050 7.08756 7.39391 7.55069 8.93625 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.098562 B = 0.004197 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 284.015996 B = 6669.697503 C = 6859.449059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.100 4.100 11 C 0.149 3.851 12 N -0.729 5.729 13 C 0.699 3.301 14 O -0.641 6.641 15 N -0.703 5.703 16 C 0.066 3.934 17 C -0.185 4.185 18 C -0.170 4.170 19 H 0.263 0.737 20 H -0.008 1.008 21 H -0.008 1.008 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.413 0.587 27 H 0.413 0.587 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.192 -18.435 0.019 21.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.138 4.138 11 C 0.024 3.976 12 N -0.384 5.384 13 C 0.399 3.601 14 O -0.523 6.523 15 N -0.358 5.358 16 C -0.041 4.041 17 C -0.224 4.224 18 C -0.208 4.208 19 H 0.072 0.928 20 H 0.011 0.989 21 H 0.011 0.989 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.249 0.751 27 H 0.250 0.750 28 H 0.130 0.870 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.132 0.868 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.967 -18.495 0.017 21.010 hybrid contribution 0.595 1.178 0.020 1.320 sum 10.562 -17.318 0.037 20.284 Atomic orbital electron populations 1.70107 1.07985 1.27882 1.51627 1.26039 0.95748 1.03606 0.94761 0.85454 0.78168 0.77843 0.79285 1.18979 1.21213 1.18991 1.21663 0.93785 0.91997 1.50584 0.91448 1.18948 0.94477 0.92952 0.95118 1.21590 0.98439 0.91587 1.02185 1.21097 0.91371 0.84621 1.00498 1.45010 1.10916 1.03429 1.79068 1.16132 0.85043 0.81404 0.77557 1.90879 1.16528 1.84779 1.60093 1.44290 1.09011 1.03664 1.78817 1.21472 0.97841 0.77699 1.07075 1.23537 1.03681 1.01536 0.93613 1.23498 1.01215 0.99893 0.96189 0.92802 0.98927 0.98938 0.91282 0.91270 0.93509 0.93501 0.75082 0.74972 0.86980 0.87634 0.87297 0.86810 0.87078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.52 13.29 21.45 0.28 -57.24 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 3 Si 0.97 43.79 29.54 68.60 2.03 45.82 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 7 C -0.54 -30.35 9.11 25.60 0.23 -30.12 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 9 C 0.02 1.20 4.97 29.85 0.15 1.34 16 10 C -0.10 -3.87 5.27 30.59 0.16 -3.71 16 11 C 0.15 5.42 5.67 86.38 0.49 5.91 16 12 N -0.73 -20.77 5.56 -478.53 -2.66 -23.43 16 13 C 0.70 21.72 8.57 179.05 1.53 23.26 16 14 O -0.64 -26.44 15.91 -3.98 -0.06 -26.51 16 15 N -0.70 -14.94 5.57 -457.82 -2.55 -17.49 16 16 C 0.07 1.29 6.43 44.99 0.29 1.58 16 17 C -0.18 -2.46 10.46 30.62 0.32 -2.14 16 18 C -0.17 -2.04 10.46 30.62 0.32 -1.72 16 19 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 20 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 21 H -0.01 -0.45 8.14 -2.38 -0.02 -0.46 16 22 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 23 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 24 H 0.05 1.85 8.14 -2.38 -0.02 1.84 16 25 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.41 8.61 8.49 -92.71 -0.79 7.82 16 27 H 0.41 5.75 8.84 -92.71 -0.82 4.93 16 28 H 0.11 2.79 7.40 -2.39 -0.02 2.78 16 29 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -72.46 279.78 0.50 -71.95 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -0.49 Total: 12.26 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 3.96 Total: -5.36 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -4.93 Total: -98.16 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.06 Total: -26.51 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -72.46 0.50 -71.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070650189.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.040 kcal (2) G-P(sol) polarization free energy of solvation -72.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds