Wall clock time and date at job start Sun Mar 29 2020 21:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46768 * 124.35153 * 2 1 4 4 C 1.54475 * 105.47476 * 196.75226 * 3 2 1 5 5 H 1.08998 * 110.97064 * 216.46287 * 4 3 2 6 6 N 1.46503 * 110.96731 * 92.70550 * 4 3 2 7 7 C 1.34771 * 120.00201 * 154.99692 * 6 4 3 8 8 O 1.21691 * 120.00110 * 0.02562 * 7 6 4 9 9 C 1.46373 * 120.00338 * 180.02562 * 7 6 4 10 10 H 1.08005 * 120.00022 * 353.93842 * 9 7 6 11 11 C 1.40048 * 120.00125 * 173.93979 * 9 7 6 12 12 N 1.30671 * 120.00147 * 6.15369 * 11 9 7 13 13 Si 1.86807 * 120.00054 * 186.14958 * 11 9 7 14 14 H 1.48493 * 109.46866 * 94.98248 * 13 11 9 15 15 H 1.48497 * 109.47164 * 214.98544 * 13 11 9 16 16 H 1.48498 * 109.46882 * 334.98587 * 13 11 9 17 17 C 1.54624 * 101.76669 * 334.58840 * 4 3 2 18 18 C 1.34418 * 124.34968 * 179.71054 * 2 1 3 19 19 O 1.21286 * 124.94000 * 359.83118 * 18 2 1 20 20 H 1.09000 * 109.47305 * 89.99482 * 1 2 3 21 21 H 1.09002 * 109.47104 * 209.99594 * 1 2 3 22 22 H 1.08998 * 109.46411 * 329.99250 * 1 2 3 23 23 H 1.08997 * 110.24536 * 315.75756 * 3 2 1 24 24 H 1.09000 * 110.23920 * 77.66557 * 3 2 1 25 25 H 0.97006 * 120.00131 * 335.00669 * 6 4 3 26 26 H 0.96998 * 119.99961 * 180.02562 * 12 11 9 27 27 H 1.09007 * 110.48642 * 143.46968 * 17 4 3 28 28 H 1.08997 * 110.48756 * 265.98501 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2117 0.0000 4 6 3.7027 0.7476 -0.4291 5 1 4.4751 1.3013 0.1047 6 7 3.8774 0.8730 -1.8783 7 6 5.1125 1.0150 -2.3984 8 8 6.0828 1.0385 -1.6644 9 6 5.2870 1.1409 -3.8462 10 1 4.4392 1.0222 -4.5047 11 6 6.5534 1.4151 -4.3777 12 7 7.5993 1.4396 -3.5948 13 14 6.7474 1.7458 -6.2060 14 1 6.7180 3.2103 -6.4499 15 1 8.0431 1.1919 -6.6745 16 1 5.6353 1.0982 -6.9469 17 6 3.6899 -0.7378 0.0002 18 6 2.2235 -1.1098 0.0056 19 8 1.7946 -2.2442 0.0143 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3632 0.8899 0.5140 23 1 1.9012 1.9365 -0.7135 24 1 2.3256 1.6463 0.9991 25 1 3.1040 0.8540 -2.4635 26 1 8.4763 1.6300 -3.9628 27 1 4.2354 -1.3478 -0.7200 28 1 4.1179 -0.8508 0.9962 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082275120.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:29 Heat of formation + Delta-G solvation = -98.848673 kcal Electronic energy + Delta-G solvation = -14013.174237 eV Core-core repulsion = 11448.908722 eV Total energy + Delta-G solvation = -2564.265515 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.52451 -39.25779 -37.46916 -35.06100 -34.39315 -32.10709 -28.78539 -28.18266 -27.02854 -23.15704 -21.46942 -20.62717 -19.26406 -17.74647 -17.68682 -17.22477 -16.47694 -15.84740 -15.76439 -15.18693 -14.52772 -14.39237 -14.31205 -13.64087 -13.33993 -13.16391 -13.08223 -12.78139 -12.70661 -12.58594 -12.34204 -12.00115 -11.00714 -10.89936 -9.91560 -9.73554 -9.50949 -8.29410 -6.84248 1.41799 1.42132 1.47751 1.57937 2.05668 2.25238 2.46888 3.00454 3.38211 3.45888 3.74983 3.94928 4.34208 4.41509 4.48310 4.64436 4.69670 4.87635 4.88917 4.97539 5.33781 5.52950 5.88096 5.99784 6.19508 6.26729 6.88549 7.08260 7.50457 8.48702 8.67194 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.052454 B = 0.007320 C = 0.007103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.671431 B = 3824.470373 C = 3940.943886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.617 5.617 3 C 0.108 3.892 4 C 0.140 3.860 5 H 0.096 0.904 6 N -0.745 5.745 7 C 0.543 3.457 8 O -0.624 6.624 9 C -0.576 4.576 10 H 0.084 0.916 11 C 0.033 3.967 12 N -0.818 5.818 13 Si 0.994 3.006 14 H -0.261 1.261 15 H -0.275 1.275 16 H -0.252 1.252 17 C -0.167 4.167 18 C 0.517 3.483 19 O -0.584 6.584 20 H 0.061 0.939 21 H 0.064 0.936 22 H 0.107 0.893 23 H 0.104 0.896 24 H 0.115 0.885 25 H 0.393 0.607 26 H 0.275 0.725 27 H 0.072 0.928 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.125 3.019 3.940 13.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.350 5.350 3 C -0.015 4.015 4 C 0.033 3.967 5 H 0.114 0.886 6 N -0.399 5.399 7 C 0.347 3.653 8 O -0.511 6.511 9 C -0.612 4.612 10 H 0.102 0.898 11 C -0.183 4.183 12 N -0.448 5.448 13 Si 0.814 3.186 14 H -0.186 1.186 15 H -0.200 1.200 16 H -0.176 1.176 17 C -0.208 4.208 18 C 0.306 3.694 19 O -0.465 6.465 20 H 0.080 0.920 21 H 0.083 0.917 22 H 0.125 0.875 23 H 0.122 0.878 24 H 0.133 0.867 25 H 0.227 0.773 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.579 2.507 4.517 12.679 hybrid contribution 0.114 -0.159 -0.915 0.935 sum -11.465 2.348 3.602 12.245 Atomic orbital electron populations 1.21759 0.76271 1.04196 1.02729 1.48293 1.07611 1.06904 1.72198 1.22559 0.87805 0.86639 1.04475 1.21545 0.97678 0.93559 0.83911 0.88598 1.45844 1.08681 1.79760 1.05584 1.18498 0.81243 0.75838 0.89693 1.90564 1.40512 1.57241 1.62801 1.21423 0.96092 1.52546 0.91145 0.89793 1.26884 0.94567 0.91847 1.05009 1.70165 0.99993 1.35699 1.38911 0.85053 0.78634 0.79314 0.75592 1.18572 1.19962 1.17563 1.22813 0.93686 0.99597 1.04746 1.21033 0.89894 0.84247 0.74215 1.90645 1.79587 1.22980 1.53306 0.92012 0.91722 0.87501 0.87830 0.86673 0.77335 0.91532 0.90914 0.85981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.67 10.97 127.77 1.40 3.07 15 2 N -0.62 -15.52 3.33 -842.89 -2.81 -18.33 15 3 C 0.11 2.39 6.97 86.83 0.61 2.99 15 4 C 0.14 4.70 3.53 46.05 0.16 4.86 15 5 H 0.10 3.51 7.54 -2.39 -0.02 3.49 15 6 N -0.75 -30.89 5.12 -441.82 -2.26 -33.15 15 7 C 0.54 29.94 7.74 86.36 0.67 30.60 15 8 O -0.62 -39.67 14.69 -4.32 -0.06 -39.73 15 9 C -0.58 -31.73 9.53 24.83 0.24 -31.50 15 10 H 0.08 4.19 7.86 -2.91 -0.02 4.17 15 11 C 0.03 1.77 5.49 85.30 0.47 2.24 15 12 N -0.82 -48.90 11.85 21.84 0.26 -48.65 15 13 Si 0.99 40.22 29.56 68.60 2.03 42.25 15 14 H -0.26 -10.02 7.11 99.48 0.71 -9.31 15 15 H -0.27 -10.81 7.11 99.48 0.71 -10.10 15 16 H -0.25 -9.58 7.11 99.48 0.71 -8.88 15 17 C -0.17 -5.75 6.58 30.59 0.20 -5.54 15 18 C 0.52 17.54 8.02 87.90 0.71 18.25 15 19 O -0.58 -24.14 17.59 -3.05 -0.05 -24.19 15 20 H 0.06 1.08 8.14 -2.39 -0.02 1.06 15 21 H 0.06 1.32 7.92 -2.39 -0.02 1.30 15 22 H 0.11 1.19 8.14 -2.39 -0.02 1.17 15 23 H 0.10 1.99 8.08 -2.39 -0.02 1.97 15 24 H 0.12 1.84 8.14 -2.39 -0.02 1.83 15 25 H 0.39 14.45 8.64 -92.70 -0.80 13.65 15 26 H 0.27 14.88 8.29 -92.71 -0.77 14.11 15 27 H 0.07 3.02 8.09 -2.38 -0.02 3.00 15 28 H 0.12 3.65 8.14 -2.39 -0.02 3.64 15 Total: -1.00 -77.67 251.29 1.92 -75.74 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.37 Total: 21.09 kcal Atomic # 6 Polarization: 20.52 SS G_CDS: 4.45 Total: 24.97 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -4.81 Total: -100.13 kcal Atomic # 8 Polarization: -63.80 SS G_CDS: -0.12 Total: -63.92 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -77.67 1.92 -75.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082275120.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.107 kcal (2) G-P(sol) polarization free energy of solvation -77.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds