Wall clock time and date at job start Sun Mar 29 2020 22:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47017 * 2 1 4 4 H 1.09004 * 109.46992 * 55.64266 * 3 2 1 5 5 C 1.50706 * 109.46909 * 175.64061 * 3 2 1 6 6 H 1.07994 * 119.99781 * 114.44444 * 5 3 2 7 7 C 1.37873 * 120.00187 * 294.44657 * 5 3 2 8 8 N 1.31519 * 119.99655 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00084 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47172 * 179.97438 * 9 7 5 11 11 H 1.48492 * 109.47340 * 299.99729 * 9 7 5 12 12 H 1.48505 * 109.47233 * 59.99860 * 9 7 5 13 13 N 1.46896 * 109.46841 * 295.63912 * 3 2 1 14 14 C 1.47442 * 111.00568 * 315.34742 * 13 3 2 15 15 C 1.54320 * 107.23166 * 123.25537 * 14 13 3 16 16 C 1.55143 * 103.01998 * 22.29083 * 15 14 13 17 17 C 1.47847 * 110.99854 * 76.19455 * 13 3 2 18 18 H 1.08995 * 110.37783 * 332.46352 * 17 13 3 19 19 C 1.53004 * 110.37064 * 94.80402 * 17 13 3 20 20 N 1.46893 * 109.47384 * 296.40557 * 19 17 13 21 21 H 1.08999 * 109.47127 * 71.62935 * 1 2 3 22 22 H 1.09001 * 109.47215 * 191.63817 * 1 2 3 23 23 H 1.09006 * 109.46946 * 311.63592 * 1 2 3 24 24 H 1.08994 * 109.47019 * 240.00232 * 2 1 3 25 25 H 1.09004 * 109.47470 * 119.99881 * 2 1 3 26 26 H 0.97004 * 119.99369 * 180.02562 * 8 7 5 27 27 H 1.08988 * 109.89256 * 242.66736 * 14 13 3 28 28 H 1.08999 * 109.88281 * 3.85944 * 14 13 3 29 29 H 1.09004 * 110.70478 * 140.66794 * 15 14 13 30 30 H 1.08996 * 110.70709 * 263.90435 * 15 14 13 31 31 H 1.08996 * 110.99020 * 82.43073 * 16 15 14 32 32 H 1.08994 * 110.98841 * 206.21687 * 16 15 14 33 33 H 1.08994 * 109.47353 * 56.41091 * 19 17 13 34 34 H 1.09005 * 109.46779 * 176.40897 * 19 17 13 35 35 H 1.00899 * 111.00663 * 183.28484 * 20 19 17 36 36 H 1.00899 * 111.00288 * 307.24495 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6143 1.9784 0.8484 5 6 3.5432 1.4439 0.1080 6 1 4.1431 1.8097 -0.7121 7 6 4.1524 0.9781 1.2537 8 7 3.4217 0.5331 2.2526 9 14 6.0155 0.9804 1.3879 10 1 6.4174 0.4344 2.7091 11 1 6.5906 0.1386 0.3082 12 1 6.5198 2.3708 1.2532 13 7 1.6382 2.1039 -1.2486 14 6 1.8750 1.2278 -2.4106 15 6 0.5264 1.0655 -3.1431 16 6 -0.2737 2.3124 -2.6827 17 6 0.2056 2.4683 -1.2179 18 1 -0.3443 1.7910 -0.5645 19 6 0.0341 3.9157 -0.7525 20 7 0.5169 4.0465 0.6286 21 1 -0.3633 0.3239 -0.9753 22 1 -0.3634 -1.0065 0.2073 23 1 -0.3633 0.6828 0.7681 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.8504 0.2057 3.0588 27 1 2.6062 1.6852 -3.0769 28 1 2.2337 0.2550 -2.0745 29 1 0.6708 1.0777 -4.2235 30 1 0.0258 0.1492 -2.8304 31 1 -0.0082 3.1875 -3.2757 32 1 -1.3466 2.1253 -2.7252 33 1 0.6077 4.5766 -1.4021 34 1 -1.0203 4.1888 -0.7962 35 1 0.3653 4.9809 0.9778 36 1 0.0840 3.3613 1.2295 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168927786.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:19 Heat of formation + Delta-G solvation = 22.612663 kcal Electronic energy + Delta-G solvation = -15558.857748 eV Core-core repulsion = 13271.525381 eV Total energy + Delta-G solvation = -2287.332367 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.14821 -34.14574 -33.39868 -31.45351 -29.69121 -28.41126 -26.14506 -23.55960 -22.79835 -21.00886 -19.56963 -18.70630 -16.12078 -15.93079 -15.25805 -14.42038 -14.01861 -13.89215 -13.44571 -13.01132 -12.60256 -12.22552 -11.93803 -11.69437 -11.24198 -11.10696 -10.78625 -10.73294 -10.56709 -10.38989 -10.30832 -10.17849 -9.84609 -9.52585 -9.19319 -8.69570 -8.19396 -7.85621 -6.80846 -5.84132 -3.83143 3.43231 3.46556 3.50925 4.56516 4.94572 5.12779 5.25761 5.46168 5.53072 5.61728 5.87380 5.94832 6.03251 6.08452 6.10181 6.19556 6.29811 6.30431 6.39891 6.46077 6.66090 6.75475 6.85450 6.93792 7.18083 7.39725 7.63540 7.76938 7.81765 8.04834 8.05309 8.44102 8.62927 8.83851 9.23178 9.79616 11.24299 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032746 B = 0.011138 C = 0.010476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.848384 B = 2513.228816 C = 2672.088171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.156 4.156 3 C 0.213 3.787 4 H 0.064 0.936 5 C -0.484 4.484 6 H 0.056 0.944 7 C 0.057 3.943 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.291 1.291 11 H -0.281 1.281 12 H -0.278 1.278 13 N -0.500 5.500 14 C 0.037 3.963 15 C -0.142 4.142 16 C -0.123 4.123 17 C 0.040 3.960 18 H 0.078 0.922 19 C 0.084 3.916 20 N -0.829 5.829 21 H 0.051 0.949 22 H 0.029 0.971 23 H 0.045 0.955 24 H 0.043 0.957 25 H 0.086 0.914 26 H 0.257 0.743 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.008 0.992 35 H 0.327 0.673 36 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.139 2.067 -6.115 10.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.195 4.195 3 C 0.107 3.893 4 H 0.081 0.919 5 C -0.523 4.523 6 H 0.074 0.926 7 C -0.143 4.143 8 N -0.538 5.538 9 Si 0.720 3.280 10 H -0.217 1.217 11 H -0.207 1.207 12 H -0.204 1.204 13 N -0.224 5.224 14 C -0.091 4.091 15 C -0.181 4.181 16 C -0.162 4.162 17 C -0.069 4.069 18 H 0.095 0.905 19 C -0.047 4.047 20 N -0.358 5.358 21 H 0.070 0.930 22 H 0.048 0.952 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.104 0.896 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.026 0.974 35 H 0.139 0.861 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.076 2.280 -6.266 9.723 hybrid contribution -0.431 -0.586 0.455 0.858 sum -7.507 1.693 -5.811 9.643 Atomic orbital electron populations 1.22273 0.99983 0.99155 1.00076 1.22370 0.91484 1.03470 1.02158 1.19524 0.95225 0.87504 0.87084 0.91852 1.21066 0.91204 1.39344 1.00662 0.92617 1.24876 0.97647 0.95961 0.95838 1.69909 1.34593 1.43715 1.05589 0.86681 0.86452 0.78190 0.76710 1.21672 1.20667 1.20418 1.63666 1.13730 1.40918 1.04100 1.22868 0.95040 0.98046 0.93132 1.22859 0.97879 0.97601 0.99752 1.22663 0.98406 0.98267 0.96866 1.23236 0.92426 0.95891 0.95307 0.90478 1.21713 0.94762 0.97397 0.90837 1.58531 1.66671 1.07726 1.02843 0.93016 0.95152 0.93635 0.93882 0.89595 0.93346 0.92624 0.91174 0.92159 0.92057 0.91448 0.92364 0.91366 0.97387 0.86102 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 8.15 37.16 0.30 -2.76 16 2 C -0.16 -3.62 4.86 -26.73 -0.13 -3.75 16 3 C 0.21 5.28 1.68 -68.86 -0.12 5.16 16 4 H 0.06 1.70 6.04 -51.93 -0.31 1.39 16 5 C -0.48 -13.57 8.34 -34.44 -0.29 -13.86 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 8 N -0.90 -25.91 11.73 55.43 0.65 -25.26 16 9 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 N -0.50 -10.77 4.69 -216.85 -1.02 -11.79 16 14 C 0.04 0.73 5.88 -2.84 -0.02 0.71 16 15 C -0.14 -2.25 6.33 -24.91 -0.16 -2.40 16 16 C -0.12 -1.87 6.31 -24.59 -0.16 -2.03 16 17 C 0.04 0.72 1.88 -66.18 -0.12 0.60 16 18 H 0.08 1.42 3.46 -51.93 -0.18 1.24 16 19 C 0.08 1.41 6.49 -3.83 -0.02 1.38 16 20 N -0.83 -14.65 8.29 -10.37 -0.09 -14.74 16 21 H 0.05 0.92 3.58 -51.93 -0.19 0.73 16 22 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.04 0.88 7.32 -51.93 -0.38 0.50 16 24 H 0.04 0.99 5.44 -51.93 -0.28 0.71 16 25 H 0.09 2.28 6.44 -51.93 -0.33 1.94 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.06 1.09 8.14 -51.94 -0.42 0.67 16 28 H 0.07 1.49 4.88 -51.93 -0.25 1.24 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.95 6.87 -51.93 -0.36 0.59 16 31 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.01 0.12 8.14 -51.93 -0.42 -0.31 16 35 H 0.33 4.87 9.08 -39.29 -0.36 4.52 16 36 H 0.34 5.92 8.31 -39.29 -0.33 5.59 16 LS Contribution 265.21 15.07 4.00 4.00 Total: -1.00 -29.11 265.21 -7.75 -36.86 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -5.47 Total: 9.32 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -0.80 Total: -15.44 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: -0.45 Total: -51.79 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.11 -7.75 -36.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168927786.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.474 kcal (2) G-P(sol) polarization free energy of solvation -29.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds