Wall clock time and date at job start Sun Mar 29 2020 22:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47017 * 2 1 4 4 H 1.09004 * 109.46992 * 55.64266 * 3 2 1 5 5 C 1.50706 * 109.46909 * 175.64061 * 3 2 1 6 6 H 1.07994 * 119.99781 * 114.44444 * 5 3 2 7 7 C 1.37873 * 120.00187 * 294.44657 * 5 3 2 8 8 N 1.31519 * 119.99655 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00084 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47172 * 179.97438 * 9 7 5 11 11 H 1.48492 * 109.47340 * 299.99729 * 9 7 5 12 12 H 1.48505 * 109.47233 * 59.99860 * 9 7 5 13 13 N 1.46896 * 109.46841 * 295.63912 * 3 2 1 14 14 C 1.47442 * 111.00568 * 315.34742 * 13 3 2 15 15 C 1.54320 * 107.23166 * 123.25537 * 14 13 3 16 16 C 1.55143 * 103.01998 * 22.29083 * 15 14 13 17 17 C 1.47847 * 110.99854 * 76.19455 * 13 3 2 18 18 H 1.08995 * 110.37783 * 332.46352 * 17 13 3 19 19 C 1.53004 * 110.37064 * 94.80402 * 17 13 3 20 20 N 1.46893 * 109.47384 * 296.40557 * 19 17 13 21 21 H 1.08999 * 109.47127 * 71.62935 * 1 2 3 22 22 H 1.09001 * 109.47215 * 191.63817 * 1 2 3 23 23 H 1.09006 * 109.46946 * 311.63592 * 1 2 3 24 24 H 1.08994 * 109.47019 * 240.00232 * 2 1 3 25 25 H 1.09004 * 109.47470 * 119.99881 * 2 1 3 26 26 H 0.97004 * 119.99369 * 180.02562 * 8 7 5 27 27 H 1.08988 * 109.89256 * 242.66736 * 14 13 3 28 28 H 1.08999 * 109.88281 * 3.85944 * 14 13 3 29 29 H 1.09004 * 110.70478 * 140.66794 * 15 14 13 30 30 H 1.08996 * 110.70709 * 263.90435 * 15 14 13 31 31 H 1.08996 * 110.99020 * 82.43073 * 16 15 14 32 32 H 1.08994 * 110.98841 * 206.21687 * 16 15 14 33 33 H 1.08994 * 109.47353 * 56.41091 * 19 17 13 34 34 H 1.09005 * 109.46779 * 176.40897 * 19 17 13 35 35 H 1.00899 * 111.00663 * 183.28484 * 20 19 17 36 36 H 1.00899 * 111.00288 * 307.24495 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6143 1.9784 0.8484 5 6 3.5432 1.4439 0.1080 6 1 4.1431 1.8097 -0.7121 7 6 4.1524 0.9781 1.2537 8 7 3.4217 0.5331 2.2526 9 14 6.0155 0.9804 1.3879 10 1 6.4174 0.4344 2.7091 11 1 6.5906 0.1386 0.3082 12 1 6.5198 2.3708 1.2532 13 7 1.6382 2.1039 -1.2486 14 6 1.8750 1.2278 -2.4106 15 6 0.5264 1.0655 -3.1431 16 6 -0.2737 2.3124 -2.6827 17 6 0.2056 2.4683 -1.2179 18 1 -0.3443 1.7910 -0.5645 19 6 0.0341 3.9157 -0.7525 20 7 0.5169 4.0465 0.6286 21 1 -0.3633 0.3239 -0.9753 22 1 -0.3634 -1.0065 0.2073 23 1 -0.3633 0.6828 0.7681 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.8504 0.2057 3.0588 27 1 2.6062 1.6852 -3.0769 28 1 2.2337 0.2550 -2.0745 29 1 0.6708 1.0777 -4.2235 30 1 0.0258 0.1492 -2.8304 31 1 -0.0082 3.1875 -3.2757 32 1 -1.3466 2.1253 -2.7252 33 1 0.6077 4.5766 -1.4021 34 1 -1.0203 4.1888 -0.7962 35 1 0.3653 4.9809 0.9778 36 1 0.0840 3.3613 1.2295 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168927786.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:18 Heat of formation + Delta-G solvation = 1.428947 kcal Electronic energy + Delta-G solvation = -15559.776343 eV Core-core repulsion = 13271.525381 eV Total energy + Delta-G solvation = -2288.250962 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.69071 -35.84374 -34.89297 -33.38067 -31.29899 -29.82603 -28.05920 -25.06431 -24.59963 -22.46905 -21.08589 -20.35908 -18.00921 -17.69394 -16.76666 -16.26889 -15.57731 -15.26670 -14.94764 -14.65256 -14.19257 -13.72189 -13.50389 -13.43389 -12.99397 -12.78574 -12.65185 -12.48305 -12.09876 -11.97867 -11.92103 -11.61912 -11.53411 -11.38208 -10.79952 -10.66712 -10.30022 -9.21160 -8.46340 -7.99167 -6.04575 1.42464 1.44379 1.51334 2.49866 3.29982 3.54289 3.78413 3.97301 4.21310 4.27016 4.41989 4.49715 4.57595 4.65014 4.74289 4.76759 4.87709 4.96668 5.03225 5.06602 5.17722 5.27228 5.32499 5.41055 5.53399 5.60382 5.73657 5.90655 5.96135 6.39893 6.51960 6.76993 6.85356 7.01080 7.11873 7.62649 9.06817 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032746 B = 0.011138 C = 0.010476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.848384 B = 2513.228816 C = 2672.088171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.148 4.148 3 C 0.223 3.777 4 H 0.040 0.960 5 C -0.502 4.502 6 H 0.038 0.962 7 C 0.012 3.988 8 N -0.919 5.919 9 Si 0.946 3.054 10 H -0.285 1.285 11 H -0.276 1.276 12 H -0.279 1.279 13 N -0.518 5.518 14 C 0.033 3.967 15 C -0.133 4.133 16 C -0.114 4.114 17 C 0.033 3.967 18 H 0.075 0.925 19 C 0.087 3.913 20 N -0.851 5.851 21 H 0.073 0.927 22 H 0.044 0.956 23 H 0.042 0.958 24 H 0.040 0.960 25 H 0.048 0.952 26 H 0.256 0.744 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.040 0.960 35 H 0.340 0.660 36 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.437 2.306 -7.370 12.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.188 4.188 3 C 0.115 3.885 4 H 0.058 0.942 5 C -0.541 4.541 6 H 0.057 0.943 7 C -0.185 4.185 8 N -0.560 5.560 9 Si 0.773 3.227 10 H -0.211 1.211 11 H -0.201 1.201 12 H -0.204 1.204 13 N -0.242 5.242 14 C -0.095 4.095 15 C -0.171 4.171 16 C -0.152 4.152 17 C -0.076 4.076 18 H 0.092 0.908 19 C -0.044 4.044 20 N -0.382 5.382 21 H 0.091 0.909 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.154 0.846 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.383 2.531 -7.536 11.553 hybrid contribution -0.009 -0.625 0.825 1.035 sum -8.392 1.907 -6.710 10.913 Atomic orbital electron populations 1.22138 0.96709 1.00160 1.01264 1.22173 0.94399 1.02072 1.00147 1.19193 0.93184 0.88133 0.87967 0.94216 1.21391 0.93366 1.39160 1.00215 0.94344 1.25528 1.01460 0.95854 0.95700 1.70025 1.35877 1.44264 1.05806 0.85809 0.81991 0.78030 0.76878 1.21068 1.20135 1.20450 1.63529 1.16609 1.40917 1.03132 1.22856 0.97426 0.96373 0.92861 1.22793 0.95298 0.98255 1.00741 1.22658 0.99972 0.98136 0.94454 1.23384 0.90210 0.96471 0.97502 0.90759 1.21698 0.96372 0.96416 0.89924 1.58507 1.67480 1.08639 1.03585 0.90873 0.93698 0.93864 0.94137 0.93314 0.93488 0.93360 0.93442 0.89720 0.91467 0.90700 0.89349 0.92323 0.94228 0.84648 0.85324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.45 8.15 71.98 0.59 -4.86 16 2 C -0.15 -6.99 4.86 30.60 0.15 -6.84 16 3 C 0.22 11.19 1.68 44.17 0.07 11.26 16 4 H 0.04 2.19 6.04 -2.39 -0.01 2.17 16 5 C -0.50 -28.87 8.34 25.60 0.21 -28.65 16 6 H 0.04 2.28 7.81 -2.91 -0.02 2.25 16 7 C 0.01 0.70 5.30 84.65 0.45 1.15 16 8 N -0.92 -54.16 11.73 21.45 0.25 -53.91 16 9 Si 0.95 45.97 29.54 68.60 2.03 47.99 16 10 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 13 N -0.52 -22.08 4.69 -839.97 -3.94 -26.01 16 14 C 0.03 1.27 5.88 86.65 0.51 1.78 16 15 C -0.13 -3.76 6.33 31.78 0.20 -3.56 16 16 C -0.11 -3.01 6.31 31.98 0.20 -2.81 16 17 C 0.03 1.10 1.88 45.39 0.09 1.19 16 18 H 0.07 2.57 3.46 -2.39 -0.01 2.56 16 19 C 0.09 2.73 6.49 86.31 0.56 3.29 16 20 N -0.85 -29.56 8.29 -186.73 -1.55 -31.11 16 21 H 0.07 2.40 3.58 -2.39 -0.01 2.40 16 22 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.04 1.62 7.32 -2.38 -0.02 1.60 16 24 H 0.04 1.89 5.44 -2.39 -0.01 1.88 16 25 H 0.05 2.64 6.44 -2.38 -0.02 2.63 16 26 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 27 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.05 2.03 4.88 -2.39 -0.01 2.02 16 29 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 30 H 0.07 1.84 6.87 -2.39 -0.02 1.83 16 31 H 0.07 1.90 8.06 -2.39 -0.02 1.88 16 32 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.34 9.87 9.08 -89.69 -0.81 9.05 16 36 H 0.33 11.69 8.31 -89.69 -0.75 10.95 16 Total: -1.00 -63.26 265.21 -0.65 -63.91 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: -0.47 Total: 27.19 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 3.03 Total: -28.06 kcal Atomic # 7 Polarization: -105.80 SS G_CDS: -5.23 Total: -111.03 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -63.26 -0.65 -63.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168927786.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.335 kcal (2) G-P(sol) polarization free energy of solvation -63.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds