Wall clock time and date at job start Sun Mar 29 2020 22:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21284 * 119.99853 * 2 1 4 4 N 1.34773 * 119.99764 * 179.97438 * 2 1 3 5 5 C 1.47428 * 125.64987 * 359.94321 * 4 2 1 6 6 C 1.54911 * 104.82706 * 155.91955 * 5 4 2 7 7 C 1.55152 * 101.58408 * 37.01403 * 6 5 4 8 8 H 1.08998 * 110.87561 * 82.93002 * 7 6 5 9 9 N 1.46502 * 110.71729 * 206.13086 * 7 6 5 10 10 C 1.46496 * 120.00076 * 54.97611 * 9 7 6 11 11 C 1.36934 * 120.00101 * 234.97228 * 9 7 6 12 12 H 1.08005 * 120.00058 * 23.89095 * 11 9 7 13 13 C 1.38813 * 120.00384 * 203.88838 * 11 9 7 14 14 N 1.31626 * 119.99876 * 10.80140 * 13 11 9 15 15 Si 1.86800 * 120.00296 * 190.80192 * 13 11 9 16 16 H 1.48501 * 109.46999 * 60.00060 * 15 13 11 17 17 H 1.48500 * 109.47088 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47194 * 300.00031 * 15 13 11 19 19 C 1.47028 * 125.64580 * 180.02562 * 4 2 1 20 20 H 1.08993 * 109.47298 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47082 * 300.00472 * 1 2 3 22 22 H 1.09007 * 109.46828 * 59.99863 * 1 2 3 23 23 H 1.08993 * 110.36562 * 37.08235 * 5 4 2 24 24 H 1.08995 * 110.45815 * 274.80509 * 5 4 2 25 25 H 1.09002 * 111.00344 * 278.93117 * 6 5 4 26 26 H 1.09003 * 111.03170 * 155.10293 * 6 5 4 27 27 H 1.09003 * 109.47288 * 95.01210 * 10 9 7 28 28 H 1.08999 * 109.47515 * 215.00936 * 10 9 7 29 29 H 1.08999 * 109.47367 * 335.01155 * 10 9 7 30 30 H 0.96997 * 120.00207 * 179.97438 * 14 13 11 31 31 H 1.08993 * 109.88709 * 61.59034 * 19 4 2 32 32 H 1.09004 * 109.87843 * 300.42348 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.5729 -2.5103 0.0023 6 6 2.6545 -3.4358 -0.6088 7 6 3.9548 -2.8233 -0.0247 8 1 4.1412 -3.1956 0.9826 9 7 5.0972 -3.1029 -0.8982 10 6 5.0491 -2.7215 -2.3118 11 6 6.2101 -3.7208 -0.3933 12 1 6.1317 -4.3364 0.4906 13 6 7.4390 -3.5559 -1.0174 14 7 7.5824 -2.6468 -1.9585 15 14 8.8891 -4.6240 -0.5219 16 1 8.5557 -6.0518 -0.7578 17 1 10.0772 -4.2523 -1.3316 18 1 9.1875 -4.4167 0.9179 19 6 3.6440 -1.3119 0.0011 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 0.6733 -2.5203 -0.6130 24 1 1.3388 -2.8211 1.0204 25 1 2.6494 -3.3770 -1.6972 26 1 2.5229 -4.4650 -0.2746 27 1 5.5210 -1.7475 -2.4416 28 1 5.5800 -3.4645 -2.9069 29 1 4.0107 -2.6686 -2.6387 30 1 8.4411 -2.5313 -2.3944 31 1 4.0606 -0.8629 0.9027 32 1 4.0642 -0.8320 -0.8828 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259992412.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:03 Heat of formation + Delta-G solvation = -7.722451 kcal Electronic energy + Delta-G solvation = -14533.360207 eV Core-core repulsion = 12108.879316 eV Total energy + Delta-G solvation = -2424.480891 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.61644 -37.33017 -34.76800 -31.79486 -30.13126 -29.45074 -27.35644 -26.02934 -23.37920 -22.36040 -19.29929 -18.92610 -17.06157 -16.69283 -15.86083 -15.00869 -14.89433 -14.10233 -13.43739 -13.32248 -12.83525 -12.68690 -12.29725 -12.13509 -12.05244 -11.70904 -11.47354 -10.89557 -10.80281 -10.55980 -10.44537 -10.29435 -9.88341 -9.83236 -9.57255 -8.58148 -8.26590 -6.80582 -5.75902 -3.25433 2.89945 3.33764 3.38106 3.42984 3.43923 4.45705 4.78737 5.01081 5.13948 5.28767 5.36045 5.44156 5.54223 5.63579 5.69408 5.88232 5.93246 6.01279 6.34833 6.38495 6.55872 6.69801 6.83894 6.88162 7.34323 7.72315 7.77524 7.88417 8.35163 8.46005 9.18718 9.80604 10.30129 11.28229 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.057186 B = 0.007534 C = 0.007208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.512773 B = 3715.448881 C = 3883.856765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.518 3.482 3 O -0.556 6.556 4 N -0.614 5.614 5 C 0.101 3.899 6 C -0.154 4.154 7 C 0.172 3.828 8 H 0.078 0.922 9 N -0.586 5.586 10 C 0.160 3.840 11 C -0.263 4.263 12 H 0.070 0.930 13 C 0.005 3.995 14 N -0.905 5.905 15 Si 0.908 3.092 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.282 1.282 19 C 0.085 3.915 20 H 0.075 0.925 21 H 0.090 0.910 22 H 0.090 0.910 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.001 0.999 30 H 0.255 0.745 31 H 0.059 0.941 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.051 -1.299 2.790 13.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.307 3.693 3 O -0.434 6.434 4 N -0.348 5.348 5 C -0.022 4.022 6 C -0.194 4.194 7 C 0.062 3.938 8 H 0.096 0.904 9 N -0.307 5.307 10 C 0.016 3.984 11 C -0.393 4.393 12 H 0.088 0.912 13 C -0.194 4.194 14 N -0.549 5.549 15 Si 0.738 3.262 16 H -0.210 1.210 17 H -0.216 1.216 18 H -0.209 1.209 19 C -0.040 4.040 20 H 0.094 0.906 21 H 0.108 0.892 22 H 0.109 0.891 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.020 0.980 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.564 -0.637 2.655 12.857 hybrid contribution 0.834 -0.484 0.199 0.984 sum -11.730 -1.121 2.854 12.124 Atomic orbital electron populations 1.21866 0.92224 1.04041 1.04736 1.20444 0.90096 0.82459 0.76349 1.90709 1.70796 1.30882 1.51060 1.48681 1.08566 1.05528 1.72062 1.22331 0.96951 0.82475 1.00484 1.23354 0.95904 0.98442 1.01722 1.21367 0.87507 0.90017 0.94918 0.90381 1.43904 1.13820 1.68255 1.04677 1.20809 0.93935 1.00029 0.83642 1.19183 0.85715 1.22390 1.11982 0.91247 1.25108 0.97409 0.97712 0.99132 1.70057 1.23975 1.33204 1.27671 0.86285 0.81916 0.80037 0.77956 1.20979 1.21588 1.20853 1.22912 0.78183 1.00839 1.02063 0.90586 0.89154 0.89143 0.91213 0.91635 0.90430 0.90410 0.94994 0.93779 0.98031 0.93525 0.92308 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 10.19 36.01 0.37 -1.45 16 2 C 0.52 8.65 7.96 -10.99 -0.09 8.56 16 3 O -0.56 -11.88 17.43 5.55 0.10 -11.78 16 4 N -0.61 -10.21 3.33 -170.52 -0.57 -10.78 16 5 C 0.10 1.30 6.39 -2.53 -0.02 1.28 16 6 C -0.15 -2.40 6.59 -24.58 -0.16 -2.56 16 7 C 0.17 3.42 3.44 -66.10 -0.23 3.19 16 8 H 0.08 1.52 7.93 -51.93 -0.41 1.11 16 9 N -0.59 -14.38 2.93 -171.39 -0.50 -14.89 16 10 C 0.16 3.92 7.73 59.84 0.46 4.38 16 11 C -0.26 -7.09 9.61 -15.06 -0.14 -7.24 16 12 H 0.07 1.80 7.84 -52.48 -0.41 1.39 16 13 C 0.01 0.15 5.14 -17.43 -0.09 0.06 16 14 N -0.91 -26.35 10.64 55.49 0.59 -25.76 16 15 Si 0.91 21.60 29.57 -169.99 -5.03 16.57 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 C 0.08 1.70 6.51 -3.06 -0.02 1.68 16 20 H 0.08 0.64 6.08 -51.93 -0.32 0.33 16 21 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 22 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 23 H 0.07 0.72 6.94 -51.93 -0.36 0.36 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.08 1.29 6.14 -51.93 -0.32 0.97 16 26 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.03 0.86 7.26 -51.93 -0.38 0.49 16 28 H 0.04 1.15 7.33 -51.93 -0.38 0.77 16 29 H 0.00 0.03 6.12 -51.93 -0.32 -0.29 16 30 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 1.67 7.06 -51.93 -0.37 1.30 16 LS Contribution 260.50 15.07 3.93 3.93 Total: -1.00 -31.96 260.50 -5.91 -37.87 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -4.51 Total: -3.06 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 0.08 Total: 7.90 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.48 Total: -51.42 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.10 Total: -11.78 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.96 -5.91 -37.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259992412.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.146 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds