Wall clock time and date at job start Sun Mar 29 2020 22:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 110.99723 * 2 1 4 4 C 1.53043 * 109.52410 * 174.16265 * 3 2 1 5 5 C 1.53119 * 109.27960 * 59.17697 * 4 3 2 6 6 C 1.53098 * 109.15392 * 302.34568 * 5 4 3 7 7 C 1.46847 * 111.00144 * 235.79057 * 2 1 3 8 8 H 1.09002 * 109.46448 * 65.81961 * 7 2 1 9 9 C 1.50701 * 109.46132 * 305.84214 * 7 2 1 10 10 O 1.21298 * 120.00010 * 339.97964 * 9 7 2 11 11 N 1.34774 * 120.00163 * 159.97715 * 9 7 2 12 12 C 1.37094 * 120.00069 * 179.97438 * 11 9 7 13 13 H 1.07997 * 119.99992 * 0.02562 * 12 11 9 14 14 C 1.38953 * 119.99668 * 180.02562 * 12 11 9 15 15 N 1.31420 * 119.99643 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 120.00314 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47370 * 89.99795 * 16 14 12 18 18 H 1.48508 * 109.47071 * 210.00140 * 16 14 12 19 19 H 1.48498 * 109.46919 * 329.99562 * 16 14 12 20 20 H 1.09003 * 109.46681 * 184.21220 * 1 2 3 21 21 H 1.09002 * 109.47278 * 304.20972 * 1 2 3 22 22 H 1.08994 * 109.47129 * 64.21604 * 1 2 3 23 23 H 1.09004 * 109.46227 * 294.17472 * 3 2 1 24 24 H 1.08995 * 109.46481 * 54.14360 * 3 2 1 25 25 H 1.09000 * 109.50302 * 179.11836 * 4 3 2 26 26 H 1.08998 * 109.49757 * 299.23518 * 4 3 2 27 27 H 1.09005 * 109.52413 * 62.25169 * 5 4 3 28 28 H 1.08995 * 109.52669 * 182.44397 * 5 4 3 29 29 H 1.09001 * 109.51133 * 297.71708 * 6 5 4 30 30 H 1.09000 * 109.49048 * 177.59939 * 6 5 4 31 31 H 0.96998 * 119.99797 * 0.02562 * 11 9 7 32 32 H 0.96993 * 119.99470 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 0.1467 5 6 4.1188 0.5371 -1.0144 6 6 3.5183 -0.8711 -1.0207 7 6 1.9953 -0.7708 -1.1337 8 1 1.7325 -0.2709 -2.0660 9 6 1.3985 -2.1545 -1.1204 10 8 0.9172 -2.5976 -0.0990 11 7 1.3995 -2.8997 -2.2434 12 6 0.8570 -4.1587 -2.2311 13 1 0.4285 -4.5532 -1.3216 14 6 0.8585 -4.9271 -3.3888 15 7 0.3381 -6.1338 -3.3771 16 14 1.6003 -4.2450 -4.9616 17 1 3.0415 -4.5976 -5.0228 18 1 0.8980 -4.8275 -6.1333 19 1 1.4509 -2.7677 -4.9792 20 1 -0.3633 -1.0249 0.0755 21 1 -0.3634 0.5778 0.8499 22 1 -0.3633 0.4470 -0.9253 23 1 1.7324 1.8608 -0.9376 24 1 1.5634 1.9257 0.8329 25 1 3.9098 2.3514 0.1309 26 1 3.7813 0.8569 1.0906 27 1 3.8887 1.0355 -1.9561 28 1 5.1997 0.4715 -0.8906 29 1 3.7814 -1.3833 -0.0951 30 1 3.9102 -1.4299 -1.8706 31 1 1.7846 -2.5455 -3.0601 32 1 0.3388 -6.6700 -4.1854 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260048238.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:35 Heat of formation + Delta-G solvation = -34.126847 kcal Electronic energy + Delta-G solvation = -14676.152057 eV Core-core repulsion = 12250.526186 eV Total energy + Delta-G solvation = -2425.625871 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.53888 -37.22078 -34.08860 -33.12554 -31.73910 -30.70529 -26.66049 -25.10793 -23.09920 -22.45661 -19.85967 -19.21258 -18.21846 -16.14630 -15.43582 -14.85371 -14.69067 -14.34921 -13.98396 -13.60083 -13.24224 -12.89146 -12.65369 -12.45125 -12.00705 -11.82208 -11.33725 -11.21755 -11.06693 -10.70146 -10.58030 -10.49933 -10.23508 -9.96509 -9.50811 -8.40647 -8.16974 -7.89664 -6.31184 -3.82212 3.02592 3.06759 3.14771 3.71275 4.05880 4.10706 4.68400 4.93052 5.04113 5.10933 5.21246 5.45358 5.47041 5.64898 5.73939 5.75980 5.79988 5.92516 5.96119 6.03087 6.11273 6.22217 6.28764 6.53774 6.59316 7.29778 7.43406 7.60451 8.15316 8.61140 8.95601 9.43006 9.84718 10.81942 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.042345 B = 0.009179 C = 0.008206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.083930 B = 3049.681755 C = 3411.253616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.516 5.516 3 C 0.055 3.945 4 C -0.117 4.117 5 C -0.119 4.119 6 C -0.107 4.107 7 C 0.076 3.924 8 H 0.045 0.955 9 C 0.456 3.544 10 O -0.558 6.558 11 N -0.589 5.589 12 C -0.304 4.304 13 H 0.120 0.880 14 C 0.042 3.958 15 N -0.881 5.881 16 Si 0.877 3.123 17 H -0.270 1.270 18 H -0.276 1.276 19 H -0.270 1.270 20 H 0.098 0.902 21 H 0.061 0.939 22 H 0.014 0.986 23 H 0.027 0.973 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.370 0.630 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.066 14.551 0.719 15.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.241 5.241 3 C -0.073 4.073 4 C -0.155 4.155 5 C -0.157 4.157 6 C -0.146 4.146 7 C -0.036 4.036 8 H 0.063 0.937 9 C 0.242 3.758 10 O -0.439 6.439 11 N -0.228 5.228 12 C -0.433 4.433 13 H 0.138 0.862 14 C -0.161 4.161 15 N -0.521 5.521 16 Si 0.704 3.296 17 H -0.195 1.195 18 H -0.201 1.201 19 H -0.196 1.196 20 H 0.116 0.884 21 H 0.079 0.921 22 H 0.033 0.967 23 H 0.045 0.955 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.202 0.798 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.826 13.803 1.726 15.081 hybrid contribution 0.220 0.794 -2.191 2.341 sum 6.046 14.597 -0.465 15.807 Atomic orbital electron populations 1.22574 0.86698 1.04878 0.98897 1.61577 1.08281 1.11813 1.42443 1.22123 0.95543 0.89611 1.00019 1.21595 0.94675 0.99643 0.99563 1.21590 0.99834 0.95870 0.98422 1.21549 0.92675 0.97036 1.03320 1.21510 0.95808 0.94035 0.92262 0.93702 1.19578 0.85045 0.86730 0.84493 1.90529 1.49003 1.72652 1.31751 1.42252 1.54612 1.15942 1.10006 1.19441 1.35148 0.88722 1.00003 0.86216 1.25030 0.97556 0.95571 0.97929 1.69624 1.44224 1.09052 1.29185 0.86701 0.80128 0.79010 0.83775 1.19514 1.20130 1.19561 0.88382 0.92069 0.96747 0.95460 0.90842 0.91870 0.90943 0.92381 0.91666 0.90318 0.91283 0.79765 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.10 60.07 0.55 0.84 16 2 N -0.52 -8.94 4.51 -236.32 -1.07 -10.01 16 3 C 0.06 0.73 5.46 -3.83 -0.02 0.71 16 4 C -0.12 -1.37 6.09 -26.65 -0.16 -1.53 16 5 C -0.12 -1.45 6.00 -26.62 -0.16 -1.61 16 6 C -0.11 -1.68 5.35 -26.66 -0.14 -1.82 16 7 C 0.08 1.39 2.24 -68.87 -0.15 1.23 16 8 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 9 C 0.46 10.69 6.22 -10.99 -0.07 10.62 16 10 O -0.56 -15.20 14.10 5.54 0.08 -15.12 16 11 N -0.59 -14.34 5.09 -10.96 -0.06 -14.40 16 12 C -0.30 -8.68 10.16 -14.93 -0.15 -8.83 16 13 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 14 C 0.04 1.16 5.50 -17.46 -0.10 1.07 16 15 N -0.88 -25.83 13.96 55.50 0.77 -25.06 16 16 Si 0.88 19.55 27.74 -169.99 -4.71 14.83 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.27 -5.54 6.52 56.52 0.37 -5.17 16 20 H 0.10 2.05 5.63 -51.93 -0.29 1.76 16 21 H 0.06 0.90 8.09 -51.93 -0.42 0.48 16 22 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 23 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.37 8.01 5.76 -40.82 -0.24 7.78 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 258.79 15.07 3.90 3.90 Total: -1.00 -31.55 258.79 -6.22 -37.77 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -4.73 Total: 7.40 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -0.41 Total: 0.68 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.35 Total: -49.47 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.08 Total: -15.12 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.71 Total: 14.83 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.55 -6.22 -37.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260048238.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.647 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds